Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:19:37 (8397): wrapper (7.7.26015): starting
21:19:37 (8397): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 21:19:37] Arguments: --nthreads 4
[2025-10-13 21:19:37] Threads: 4
[2025-10-13 21:19:37] Checking for CVMFS
[2025-10-13 21:19:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 21:19:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 21:19:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 21:19:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 21:19:37] 2.9.2.0 1822434 6054 94164 151671 3 56 22660926 36864000 0 130560 0 6249884 99.993 210258 762 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 21:19:37] CVMFS is ok
[2025-10-13 21:19:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 21:19:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 21:19:37] Further information can be found at the LHC@home message board.
[2025-10-13 21:19:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 21:19:37] Checking for apptainer binary...
[2025-10-13 21:19:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 21:19:37] Running /usr/bin/apptainer --version
[2025-10-13 21:19:37] apptainer version 1.4.1-1.1
[2025-10-13 21:19:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 21:19:37] thA315b
[2025-10-13 21:19:37] apptainer works
[2025-10-13 21:19:37] Set ATHENA_PROC_NUMBER=4
[2025-10-13 21:19:37] Set ATHENA_CORE_NUMBER=4
[2025-10-13 21:19:37] Starting ATLAS job with PandaID=6839660573
[2025-10-13 21:19:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 22:21:54]  *** The last 200 lines of the pilot log: ***
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | job 6839660573 has completed (purged errors)
[2025-10-13 22:21:54] 2025-10-13 20:21:17,675 | INFO     | overall cleanup function is called
[2025-10-13 22:21:54] 2025-10-13 20:21:18,682 | INFO     | --- collectZombieJob: --- 10, [18737]
[2025-10-13 22:21:54] 2025-10-13 20:21:18,682 | INFO     | zombie collector waiting for pid 18737
[2025-10-13 22:21:54] 2025-10-13 20:21:18,682 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 22:21:54] 2025-10-13 20:21:18,682 | INFO     | collected zombie processes
[2025-10-13 22:21:54] 2025-10-13 20:21:18,682 | INFO     | will attempt to kill all subprocesses of pid=18737
[2025-10-13 22:21:54] 2025-10-13 20:21:18,728 | INFO     | process IDs to be killed: [18737] (in reverse order)
[2025-10-13 22:21:54] 2025-10-13 20:21:18,755 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 22:21:54] 2025-10-13 20:21:18,756 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 22:21:54] 2025-10-13 20:21:18,757 | INFO     | did not find any defunct processes belonging to 18737
[2025-10-13 22:21:54] 2025-10-13 20:21:18,758 | INFO     | did not find any defunct processes belonging to 18737
[2025-10-13 22:21:54] 2025-10-13 20:21:18,758 | INFO     | ready for new job
[2025-10-13 22:21:54] 2025-10-13 20:21:18,758 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 22:21:54] 2025-10-13 20:21:18,759 | INFO     | ***************************************
[2025-10-13 22:21:54] 2025-10-13 20:21:18,759 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 22:21:54] 2025-10-13 20:21:18,759 | INFO     | ***************************************
[2025-10-13 22:21:54] 2025-10-13 20:21:18,759 | INFO     | 
[2025-10-13 22:21:54] 2025-10-13 20:21:18,760 | INFO     | architecture information:
[2025-10-13 22:21:54] 2025-10-13 20:21:18,760 | INFO     | executing command: cat /etc/os-release
[2025-10-13 22:21:54] 2025-10-13 20:21:18,770 | INFO     | cat /etc/os-release:
[2025-10-13 22:21:54] NAME="CentOS Linux"
[2025-10-13 22:21:54] VERSION="7 (Core)"
[2025-10-13 22:21:54] ID="centos"
[2025-10-13 22:21:54] ID_LIKE="rhel fedora"
[2025-10-13 22:21:54] VERSION_ID="7"
[2025-10-13 22:21:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 22:21:54] ANSI_COLOR="0;31"
[2025-10-13 22:21:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 22:21:54] HOME_URL="https://www.centos.org/"
[2025-10-13 22:21:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 22:21:54] 
[2025-10-13 22:21:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 22:21:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 22:21:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 22:21:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 22:21:54] 
[2025-10-13 22:21:54] 2025-10-13 20:21:18,770 | INFO     | ***************************************
[2025-10-13 22:21:54] 2025-10-13 20:21:19,273 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 22:21:54] 2025-10-13 20:21:19,288 | INFO     | sufficient remaining disk space (338870403072 B)
[2025-10-13 22:21:54] 2025-10-13 20:21:19,288 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 22:21:54] 2025-10-13 20:21:19,288 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 22:21:54] 2025-10-13 20:21:19,288 | INFO     | update_server=False
[2025-10-13 22:21:54] 2025-10-13 20:21:19,288 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 22:21:54] 2025-10-13 20:21:19,288 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:21:54] 2025-10-13 20:21:19,323 | INFO     | all job control threads have been joined
[2025-10-13 22:21:54] 2025-10-13 20:21:19,331 | INFO     | all data control threads have been joined
[2025-10-13 22:21:54] 2025-10-13 20:21:19,860 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 22:21:54] 2025-10-13 20:21:19,881 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:21:54] 2025-10-13 20:21:19,881 | INFO     | aborting loop
[2025-10-13 22:21:54] 2025-10-13 20:21:20,011 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 22:21:54] 2025-10-13 20:21:20,294 | INFO     | [job] queue monitor thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:20,294 | INFO     | [job] retrieve thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:20,328 | INFO     | [job] control thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:20,334 | INFO     | [payload] validate_post thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:20,336 | INFO     | [data] control thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:20,634 | INFO     | all payload control threads have been joined
[2025-10-13 22:21:54] 2025-10-13 20:21:20,869 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:20,886 | INFO     | [job] job monitor thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:21,399 | INFO     | [data] copytool_in thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:21,409 | INFO     | [payload] failed_post thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:21,593 | INFO     | [job] validate thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:21,637 | INFO     | [payload] control thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:21,675 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:21,735 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:21,866 | INFO     | [data] copytool_out thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:24,017 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:30,234 | INFO     | job.realtimelogging is not enabled
[2025-10-13 22:21:54] 2025-10-13 20:21:31,240 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 22:21:54] 2025-10-13 20:21:47,433 | INFO     | [monitor] cgroup control has ended
[2025-10-13 22:21:54] 2025-10-13 20:21:48,916 | INFO     | PID=12168 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 22:21:54] 2025-10-13 20:21:48,916 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 22:21:54] 2025-10-13 20:21:48,916 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 22:21:54] 2025-10-13 20:21:48,916 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 22:21:54] 2025-10-13 20:21:49,278 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140235546502976)>', '<ExcThread(monitor, started 140234691958528)>']
[2025-10-13 22:21:54] 2025-10-13 20:21:49,921 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 22:21:54] 2025-10-13 20:21:49,921 | INFO     | [monitor] control thread has ended
[2025-10-13 22:21:54] 2025-10-13 20:21:54,285 | INFO     | all workflow threads have been joined
[2025-10-13 22:21:54] 2025-10-13 20:21:54,285 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 22:21:54] 2025-10-13 20:21:54,285 | INFO     | traces error code: 0
[2025-10-13 22:21:54] 2025-10-13 20:21:54,286 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 22:21:54] 2025-10-13 20:21:54,340 [wrapper] ==== pilot stdout END ====
[2025-10-13 22:21:54] 2025-10-13 20:21:54,343 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 22:21:54] 2025-10-13 20:21:54,346 [wrapper] pilotpid: 12168
[2025-10-13 22:21:54] 2025-10-13 20:21:54,349 [wrapper] Pilot exit status: 0
[2025-10-13 22:21:54] 2025-10-13 20:21:54,358 [wrapper] pandaids: 6839660573
[2025-10-13 22:21:54] 2025-10-13 20:21:54,376 [wrapper] cleanup supervisor_pilot   28528 12169
[2025-10-13 22:21:54] 2025-10-13 20:21:54,378 [wrapper] Test setup, not cleaning
[2025-10-13 22:21:54] 2025-10-13 20:21:54,381 [wrapper] apfmon messages muted
[2025-10-13 22:21:54] 2025-10-13 20:21:54,383 [wrapper] ==== wrapper stdout END ====
[2025-10-13 22:21:54] 2025-10-13 20:21:54,386 [wrapper] ==== wrapper stderr END ====
[2025-10-13 22:21:54]  *** Error codes and diagnostics ***
[2025-10-13 22:21:54]     "exeErrorCode": 0,
[2025-10-13 22:21:54]     "exeErrorDiag": "",
[2025-10-13 22:21:54]     "pilotErrorCode": 0,
[2025-10-13 22:21:54]     "pilotErrorDiag": "",
[2025-10-13 22:21:54]  *** Listing of results directory ***
[2025-10-13 22:21:54] total 412340
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:54 pilot3.tar.gz
[2025-10-13 22:21:54] -rwx------ 1 boinc boinc     36292 Oct 12 09:56 runpilot2-wrapper.sh
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc      5112 Oct 12 09:56 queuedata.json
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc       100 Oct 13 21:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 22:21:54] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 21:19 run_atlas
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc       105 Oct 13 21:19 job.xml
[2025-10-13 22:21:54] -rw-r--r-- 2 boinc boinc 222685196 Oct 13 21:19 EVNT.46676267._003525.pool.root.1
[2025-10-13 22:21:54] -rw-r--r-- 2 boinc boinc    569675 Oct 13 21:19 input.tar.gz
[2025-10-13 22:21:54] -rw-r--r-- 2 boinc boinc     15120 Oct 13 21:19 start_atlas.sh
[2025-10-13 22:21:54] drwxrwx--x 2 boinc boinc      4096 Oct 13 21:19 shared
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc         0 Oct 13 21:19 boinc_setup_complete
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc      6443 Oct 13 21:19 init_data.xml
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc         0 Oct 13 21:19 boinc_lockfile
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc      2546 Oct 13 21:19 pandaJob.out
[2025-10-13 22:21:54] -rw------- 1 boinc boinc    972799 Oct 13 21:19 agis_schedconf.cvmfs.json
[2025-10-13 22:21:54] -rw------- 1 boinc boinc   1560580 Oct 13 21:19 agis_ddmendpoints.agis.ALL.json
[2025-10-13 22:21:54] drwx------ 5 boinc boinc      4096 Oct 13 21:19 pilot3
[2025-10-13 22:21:54] -rw------- 1 boinc boinc 194074085 Oct 13 22:20 HITS.46676269._074064.pool.root.1
[2025-10-13 22:21:54] -rw------- 1 boinc boinc        95 Oct 13 22:21 pilot_heartbeat.json
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc       529 Oct 13 22:21 boinc_task_state.xml
[2025-10-13 22:21:54] -rw------- 1 boinc boinc      1014 Oct 13 22:21 memory_monitor_summary.json
[2025-10-13 22:21:54] -rw------- 1 boinc boinc    234451 Oct 13 22:21 log.46676269._074064.job.log.tgz.1
[2025-10-13 22:21:54] -rw------- 1 boinc boinc      7740 Oct 13 22:21 heartbeat.json
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc      8192 Oct 13 22:21 boinc_mmap_file
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc        27 Oct 13 22:21 wrapper_checkpoint.txt
[2025-10-13 22:21:54] -rw------- 1 boinc boinc      4822 Oct 13 22:21 pilotlog.txt
[2025-10-13 22:21:54] -rw------- 1 boinc boinc    555333 Oct 13 22:21 log.46676269._074064.job.log.1
[2025-10-13 22:21:54] -rw------- 1 boinc boinc       357 Oct 13 22:21 output.list
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc       620 Oct 13 22:21 runtime_log
[2025-10-13 22:21:54] -rw------- 1 boinc boinc    808960 Oct 13 22:21 result.tar.gz
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc      8782 Oct 13 22:21 runtime_log.err
[2025-10-13 22:21:54] -rw------- 1 boinc boinc       659 Oct 13 22:21 LyOODml75R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmDUTMDm9geiZn.diag
[2025-10-13 22:21:54] -rw-r--r-- 1 boinc boinc     12811 Oct 13 22:21 stderr.txt
[2025-10-13 22:21:54] HITS file was successfully produced:
[2025-10-13 22:21:54] -rw------- 1 boinc boinc 194074085 Oct 13 22:20 shared/HITS.pool.root.1
[2025-10-13 22:21:54]  *** Contents of shared directory: ***
[2025-10-13 22:21:54] total 408372
[2025-10-13 22:21:54] -rw-r--r-- 2 boinc boinc 222685196 Oct 13 21:19 ATLAS.root_0
[2025-10-13 22:21:54] -rw-r--r-- 2 boinc boinc    569675 Oct 13 21:19 input.tar.gz
[2025-10-13 22:21:54] -rw-r--r-- 2 boinc boinc     15120 Oct 13 21:19 start_atlas.sh
[2025-10-13 22:21:54] -rw------- 1 boinc boinc 194074085 Oct 13 22:20 HITS.pool.root.1
[2025-10-13 22:21:54] -rw------- 1 boinc boinc    808960 Oct 13 22:21 result.tar.gz
22:21:56 (8397): run_atlas exited; CPU time 13797.147153
22:21:56 (8397): called boinc_finish(0)

</stderr_txt>
]]>

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