Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:39:57 (1356844): wrapper (7.7.26015): starting
15:39:57 (1356844): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 15:39:57] Arguments: --nthreads 12
[2025-10-13 15:39:57] Threads: 12
[2025-10-13 15:39:57] Checking for CVMFS
[2025-10-13 15:39:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:39:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:39:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:39:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:39:58] 2.13.2.0 8715 30559 236064 151662 0 188 40611614 46080001 6410 130560 0 208774549 99.895 56084731 21599 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 15:39:58] CVMFS is ok
[2025-10-13 15:39:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 15:39:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 15:39:58] Further information can be found at the LHC@home message board.
[2025-10-13 15:39:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:39:58] Checking for apptainer binary...
[2025-10-13 15:39:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 15:39:58] Running /usr/bin/apptainer --version
[2025-10-13 15:39:58] apptainer version 1.4.2-1.el9
[2025-10-13 15:39:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:39:58] mff2104.farm.particle.cz
[2025-10-13 15:39:58] apptainer works
[2025-10-13 15:39:58] Set ATHENA_PROC_NUMBER=12
[2025-10-13 15:39:58] Set ATHENA_CORE_NUMBER=12
[2025-10-13 15:39:58] Starting ATLAS job with PandaID=6841985455
[2025-10-13 15:39:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 16:35:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 16:35:21] 2025-10-13 14:34:17,707 | INFO     | transferring file log.46676269._095675.job.log.tgz.1 from /scratch/.boinc/slots/3/PanDA_Pilot-6841985455/log.46676269._095675.job.log.tgz.1 to /scratch/.boinc/slot
[2025-10-13 16:35:21] 2025-10-13 14:34:17,708 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/3/PanDA_Pilot-6841985455/log.46676269._095675.job.log.tgz.1 /scratch/.boinc/slots/3/log.46676269._095675.j
[2025-10-13 16:35:21] 2025-10-13 14:34:17,735 | INFO     | adding to output.list: log.46676269._095675.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d0/49/log.46676269._095675.job.log.tg
[2025-10-13 16:35:21] 2025-10-13 14:34:17,736 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 16:35:21] 2025-10-13 14:34:17,736 | INFO     | summary of transferred files:
[2025-10-13 16:35:21] 2025-10-13 14:34:17,736 | INFO     |  -- lfn=log.46676269._095675.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 16:35:21] 2025-10-13 14:34:17,737 | INFO     | stage-out finished correctly
[2025-10-13 16:35:21] 2025-10-13 14:34:18,231 | INFO     | time since job start (3248s) is within the limit (172800.0s)
[2025-10-13 16:35:21] 2025-10-13 14:34:18,965 | WARNING  | process 1368326 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 16:35:21] 2025-10-13 14:34:18,965 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-6841985455/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 16:35:21] 2025-10-13 14:34:19,290 | INFO     | number of running child processes to parent process 1368326: 1
[2025-10-13 16:35:21] 2025-10-13 14:34:19,291 | INFO     | maximum number of monitored processes: 6
[2025-10-13 16:35:21] 2025-10-13 14:34:20,237 | INFO     | time since job start (3250s) is within the limit (172800.0s)
[2025-10-13 16:35:21] 2025-10-13 14:34:20,912 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 16:35:21] 2025-10-13 14:34:21,794 | INFO     | monitor loop #234: job 0:6841985455 is in state 'finished'
[2025-10-13 16:35:21] 2025-10-13 14:34:21,794 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:35:21] 2025-10-13 14:34:22,243 | INFO     | time since job start (3252s) is within the limit (172800.0s)
[2025-10-13 16:35:21] 2025-10-13 14:34:23,332 | INFO     | job 6841985455 has state=finished
[2025-10-13 16:35:21] 2025-10-13 14:34:23,333 | INFO     | preparing for final server update for job 6841985455 in state='finished'
[2025-10-13 16:35:21] 2025-10-13 14:34:23,333 | INFO     | this job has now completed (state=finished)
[2025-10-13 16:35:21] 2025-10-13 14:34:23,333 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 16:35:21] 2025-10-13 14:34:23,333 | INFO     | log transfer has been attempted: DONE
[2025-10-13 16:35:21] 2025-10-13 14:34:23,334 | INFO     | job 6841985455 has finished - writing final server update
[2025-10-13 16:35:21] 2025-10-13 14:34:23,334 | INFO     | total number of processed events: 400 (read)
[2025-10-13 16:35:21] 2025-10-13 14:34:23,335 | INFO     | executing command: lscpu
[2025-10-13 16:35:21] 2025-10-13 14:34:23,414 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 16:35:21] 2025-10-13 14:34:24,248 | INFO     | time since job start (3254s) is within the limit (172800.0s)
[2025-10-13 16:35:21] 2025-10-13 14:34:24,297 | INFO     | monitor loop #235: job 0:6841985455 is in state 'finished'
[2025-10-13 16:35:21] 2025-10-13 14:34:24,298 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:35:21] 2025-10-13 14:34:26,254 | INFO     | time since job start (3256s) is within the limit (172800.0s)
[2025-10-13 16:35:21] 2025-10-13 14:34:26,801 | INFO     | monitor loop #236: job 0:6841985455 is in state 'finished'
[2025-10-13 16:35:21] 2025-10-13 14:34:26,801 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:35:21] 2025-10-13 14:34:28,260 | INFO     | time since job start (3258s) is within the limit (172800.0s)
[2025-10-13 16:35:21] 2025-10-13 14:34:28,405 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 16:35:21] 2025-10-13 14:34:28,420 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2711.429177083333
[2025-10-13 16:35:21] 2025-10-13 14:34:28,438 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-6841985455/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 16:35:21] 2025-10-13 14:34:28,438 | INFO     | extracted standard info from prmon json
[2025-10-13 16:35:21] 2025-10-13 14:34:28,439 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 16:35:21] 2025-10-13 14:34:28,439 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 16:35:21] 2025-10-13 14:34:28,439 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 16:35:21] 2025-10-13 14:34:28,439 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 16:35:21] 2025-10-13 14:34:28,441 | INFO     | fitting pss+swap vs Time
[2025-10-13 16:35:21] 2025-10-13 14:34:28,441 | INFO     | sum of square deviations: 30168007.5
[2025-10-13 16:35:21] 2025-10-13 14:34:28,441 | INFO     | sum of deviations: -268787014.50000006
[2025-10-13 16:35:21] 2025-10-13 14:34:28,441 | INFO     | mean x: 1760364517.5
[2025-10-13 16:35:21] 2025-10-13 14:34:28,441 | INFO     | mean y: 2705262.4565217393
[2025-10-13 16:35:21] 2025-10-13 14:34:28,441 | INFO     | -- intersect: 15686973542.042376
[2025-10-13 16:35:21] 2025-10-13 14:34:28,441 | INFO     | intersect: 15686973542.042376
[2025-10-13 16:35:21] 2025-10-13 14:34:28,442 | INFO     | chi2: 0.0026867032837674253
[2025-10-13 16:35:21] 2025-10-13 14:34:28,442 | INFO     | -- intersect: 15686973542.042376
[2025-10-13 16:35:21] 2025-10-13 14:34:28,442 | INFO     | current memory leak: -8.91 B/s (using 46 data points, chi2=0.00)
[2025-10-13 16:35:21] 2025-10-13 14:34:28,442 | INFO     | could have reported an average CPU frequency of 2737 MHz (5 samples)
[2025-10-13 16:35:21] 2025-10-13 14:34:28,442 | INFO     | ..............................
[2025-10-13 16:35:21] 2025-10-13 14:34:28,442 | INFO     | . Timing measurements:
[2025-10-13 16:35:21] 2025-10-13 14:34:28,442 | INFO     | . get job = 0 s
[2025-10-13 16:35:21] 2025-10-13 14:34:28,442 | INFO     | . initial setup = 1 s
[2025-10-13 16:35:21] 2025-10-13 14:34:28,443 | INFO     | . payload setup = 6 s
[2025-10-13 16:35:21] 2025-10-13 14:34:28,443 | INFO     | . stage-in = 0 s
[2025-10-13 16:35:21] 2025-10-13 14:34:28,443 | INFO     | . payload execution = 3218 s
[2025-10-13 16:35:21] 2025-10-13 14:34:28,443 | INFO     | . stage-out = 0 s
[2025-10-13 16:35:21] 2025-10-13 14:34:28,443 | INFO     | . log creation = 0 s
[2025-10-13 16:35:21] 2025-10-13 14:34:28,443 | INFO     | ..............................
[2025-10-13 16:35:21] 2025-10-13 14:34:28,823 | INFO     | 
[2025-10-13 16:35:21] 2025-10-13 14:34:28,823 | INFO     | job summary report
[2025-10-13 16:35:21] 2025-10-13 14:34:28,823 | INFO     | --------------------------------------------------
[2025-10-13 16:35:21] 2025-10-13 14:34:28,824 | INFO     | PanDA job id: 6841985455
[2025-10-13 16:35:21] 2025-10-13 14:34:28,824 | INFO     | task id: 46676269
[2025-10-13 16:35:21] 2025-10-13 14:34:28,824 | INFO     | errors: (none)
[2025-10-13 16:35:21] 2025-10-13 14:34:28,824 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 16:35:21] 2025-10-13 14:34:28,824 | INFO     | pilot state: finished 
[2025-10-13 16:35:21] 2025-10-13 14:34:28,824 | INFO     | transexitcode: 0
[2025-10-13 16:35:21] 2025-10-13 14:34:28,824 | INFO     | exeerrorcode: 0
[2025-10-13 16:35:21] 2025-10-13 14:34:28,824 | INFO     | exeerrordiag: 
[2025-10-13 16:35:21] 2025-10-13 14:34:28,824 | INFO     | exitcode: 0
[2025-10-13 16:35:21] 2025-10-13 14:34:28,824 | INFO     | exitmsg: OK
[2025-10-13 16:35:21] 2025-10-13 14:34:28,824 | INFO     | cpuconsumptiontime: 34230 s
[2025-10-13 16:35:21] 2025-10-13 14:34:28,824 | INFO     | nevents: 400
[2025-10-13 16:35:21] 2025-10-13 14:34:28,825 | INFO     | neventsw: 0
[2025-10-13 16:35:21] 2025-10-13 14:34:28,825 | INFO     | pid: 1368326
[2025-10-13 16:35:21] 2025-10-13 14:34:28,825 | INFO     | pgrp: 1368326
[2025-10-13 16:35:21] 2025-10-13 14:34:28,825 | INFO     | corecount: 12
[2025-10-13 16:35:21] 2025-10-13 14:34:28,825 | INFO     | event service: False
[2025-10-13 16:35:21] 2025-10-13 14:34:28,825 | INFO     | sizes: {0: 2347978, 1: 2348835, 7: 2349097, 12: 2349125, 3229: 2374658, 3231: 2383658, 3234: 2383842, 3241: 2384068}
[2025-10-13 16:35:21] 2025-10-13 14:34:28,825 | INFO     | --------------------------------------------------
[2025-10-13 16:35:21] 2025-10-13 14:34:28,825 | INFO     | 
[2025-10-13 16:35:21] 2025-10-13 14:34:28,825 | INFO     | executing command: ls -lF /scratch/.boinc/slots/3
[2025-10-13 16:35:21] 2025-10-13 14:34:28,850 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,851 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,851 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,851 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,851 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,851 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,851 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,851 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,851 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,851 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,851 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,851 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,852 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,852 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,852 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,852 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,852 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,852 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 16:35:21] 2025-10-13 14:34:28,852 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,852 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 16:35:21] 2025-10-13 14:34:28,852 | INFO     | job 6841985455 has completed (purged errors)
[2025-10-13 16:35:21] 2025-10-13 14:34:28,852 | INFO     | overall cleanup function is called
[2025-10-13 16:35:21] 2025-10-13 14:34:29,663 | INFO     | PID=1361165 has CPU usage=10.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 16:35:21] 2025-10-13 14:34:29,663 | INFO     | .. there are 8 such processes running
[2025-10-13 16:35:21] 2025-10-13 14:34:29,862 | INFO     | --- collectZombieJob: --- 10, [1368326]
[2025-10-13 16:35:21] 2025-10-13 14:34:29,863 | INFO     | zombie collector waiting for pid 1368326
[2025-10-13 16:35:21] 2025-10-13 14:34:29,863 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 16:35:21] 2025-10-13 14:34:29,863 | INFO     | collected zombie processes
[2025-10-13 16:35:21] 2025-10-13 14:34:29,863 | INFO     | will attempt to kill all subprocesses of pid=1368326
[2025-10-13 16:35:21] 2025-10-13 14:34:30,200 | INFO     | process IDs to be killed: [1368326] (in reverse order)
[2025-10-13 16:35:21] 2025-10-13 14:34:30,312 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 16:35:21] 2025-10-13 14:34:30,312 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 16:35:21] 2025-10-13 14:34:30,325 | INFO     | did not find any defunct processes belonging to 1368326
[2025-10-13 16:35:21] 2025-10-13 14:34:30,335 | INFO     | did not find any defunct processes belonging to 1368326
[2025-10-13 16:35:21] 2025-10-13 14:34:30,335 | INFO     | ready for new job
[2025-10-13 16:35:21] 2025-10-13 14:34:30,335 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 16:35:21] 2025-10-13 14:34:30,337 | INFO     | ***************************************
[2025-10-13 16:35:21] 2025-10-13 14:34:30,337 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 16:35:21] 2025-10-13 14:34:30,337 | INFO     | ***************************************
[2025-10-13 16:35:21] 2025-10-13 14:34:30,337 | INFO     | 
[2025-10-13 16:35:21] 2025-10-13 14:34:30,343 | INFO     | architecture information:
[2025-10-13 16:35:21] 2025-10-13 14:34:30,343 | INFO     | executing command: cat /etc/os-release
[2025-10-13 16:35:21] 2025-10-13 14:34:30,365 | INFO     | cat /etc/os-release:
[2025-10-13 16:35:21] NAME="CentOS Linux"
[2025-10-13 16:35:21] VERSION="7 (Core)"
[2025-10-13 16:35:21] ID="centos"
[2025-10-13 16:35:21] ID_LIKE="rhel fedora"
[2025-10-13 16:35:21] VERSION_ID="7"
[2025-10-13 16:35:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 16:35:21] ANSI_COLOR="0;31"
[2025-10-13 16:35:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 16:35:21] HOME_URL="https://www.centos.org/"
[2025-10-13 16:35:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 16:35:21] 
[2025-10-13 16:35:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 16:35:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 16:35:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 16:35:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 16:35:21] 
[2025-10-13 16:35:21] 2025-10-13 14:34:30,365 | INFO     | ***************************************
[2025-10-13 16:35:21] 2025-10-13 14:34:30,869 | INFO     | executing command: df -mP /scratch/.boinc/slots/3
[2025-10-13 16:35:21] 2025-10-13 14:34:30,890 | INFO     | sufficient remaining disk space (1685607940096 B)
[2025-10-13 16:35:21] 2025-10-13 14:34:30,891 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 16:35:21] 2025-10-13 14:34:30,891 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 16:35:21] 2025-10-13 14:34:30,891 | INFO     | update_server=False
[2025-10-13 16:35:21] 2025-10-13 14:34:30,891 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 16:35:21] 2025-10-13 14:34:30,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 16:35:21] 2025-10-13 14:34:30,892 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:35:21] 2025-10-13 14:34:30,893 | INFO     | aborting loop
[2025-10-13 16:35:21] 2025-10-13 14:34:31,136 | INFO     | all payload control threads have been joined
[2025-10-13 16:35:21] 2025-10-13 14:34:31,428 | INFO     | all data control threads have been joined
[2025-10-13 16:35:21] 2025-10-13 14:34:31,509 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 16:35:21] 2025-10-13 14:34:31,897 | INFO     | [job] retrieve thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:31,898 | INFO     | [job] job monitor thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:32,037 | INFO     | all job control threads have been joined
[2025-10-13 16:35:21] 2025-10-13 14:34:32,142 | INFO     | [payload] control thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:32,194 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:32,434 | INFO     | [data] control thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:32,544 | INFO     | [payload] failed_post thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:32,822 | INFO     | [data] copytool_in thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:32,873 | INFO     | [job] validate thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:32,898 | INFO     | [data] copytool_out thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:33,043 | INFO     | [job] control thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:33,129 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:33,256 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:33,289 | INFO     | [payload] validate_post thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:33,546 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:35:21] 2025-10-13 14:34:34,551 | INFO     | [job] queue monitor thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:35,515 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:34:41,364 | INFO     | job.realtimelogging is not enabled
[2025-10-13 16:35:21] 2025-10-13 14:34:42,370 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 16:35:21] 2025-10-13 14:35:02,159 | INFO     | PID=1361165 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 16:35:21] 2025-10-13 14:35:02,159 | INFO     | .. there are 8 such processes running
[2025-10-13 16:35:21] 2025-10-13 14:35:02,159 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 16:35:21] 2025-10-13 14:35:02,160 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 16:35:21] 2025-10-13 14:35:02,160 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 16:35:21] 2025-10-13 14:35:15,019 | INFO     | [monitor] cgroup control has ended
[2025-10-13 16:35:21] 2025-10-13 14:35:16,150 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781835159360)>', '<ExcThread(monitor, started 139781036037888)>']
[2025-10-13 16:35:21] 2025-10-13 14:35:16,224 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 16:35:21] 2025-10-13 14:35:16,224 | INFO     | [monitor] control thread has ended
[2025-10-13 16:35:21] 2025-10-13 14:35:21,176 | INFO     | all workflow threads have been joined
[2025-10-13 16:35:21] 2025-10-13 14:35:21,177 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 16:35:21] 2025-10-13 14:35:21,177 | INFO     | traces error code: 0
[2025-10-13 16:35:21] 2025-10-13 14:35:21,177 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 16:35:21] 2025-10-13 14:35:21,293 [wrapper] ==== pilot stdout END ====
[2025-10-13 16:35:21] 2025-10-13 14:35:21,298 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 16:35:21] 2025-10-13 14:35:21,301 [wrapper] pilotpid: 1361165
[2025-10-13 16:35:21] 2025-10-13 14:35:21,304 [wrapper] Pilot exit status: 0
[2025-10-13 16:35:21] 2025-10-13 14:35:21,316 [wrapper] pandaids: 6841985455
[2025-10-13 16:35:21] 2025-10-13 14:35:21,397 [wrapper] cleanup supervisor_pilot 1469275 1361166
[2025-10-13 16:35:21] 2025-10-13 14:35:21,401 [wrapper] Test setup, not cleaning
[2025-10-13 16:35:21] 2025-10-13 14:35:21,404 [wrapper] apfmon messages muted
[2025-10-13 16:35:21] 2025-10-13 14:35:21,408 [wrapper] ==== wrapper stdout END ====
[2025-10-13 16:35:21] 2025-10-13 14:35:21,410 [wrapper] ==== wrapper stderr END ====
[2025-10-13 16:35:21]  *** Error codes and diagnostics ***
[2025-10-13 16:35:21]     "exeErrorCode": 0,
[2025-10-13 16:35:21]     "exeErrorDiag": "",
[2025-10-13 16:35:21]     "pilotErrorCode": 0,
[2025-10-13 16:35:21]     "pilotErrorDiag": "",
[2025-10-13 16:35:21]  *** Listing of results directory ***
[2025-10-13 16:35:21] total 409780
[2025-10-13 16:35:21] -rw-r--r-- 1 boinc boinc    557409 Oct 13 05:15 pilot3.tar.gz
[2025-10-13 16:35:21] -rw-r--r-- 1 boinc boinc      5112 Oct 13 05:17 queuedata.json
[2025-10-13 16:35:21] -rwx------ 1 boinc boinc     36292 Oct 13 05:18 runpilot2-wrapper.sh
[2025-10-13 16:35:21] -rw-r--r-- 1 boinc boinc       100 Oct 13 15:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 16:35:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 15:39 run_atlas
[2025-10-13 16:35:21] -rw-r--r-- 1 boinc boinc       105 Oct 13 15:39 job.xml
[2025-10-13 16:35:21] -rw-r--r-- 1 boinc boinc      6665 Oct 13 15:39 init_data.xml
[2025-10-13 16:35:21] -rw-r--r-- 2 boinc boinc 219188485 Oct 13 15:39 EVNT.46676267._004300.pool.root.1
[2025-10-13 16:35:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:39 start_atlas.sh
[2025-10-13 16:35:21] drwxrwx--x 2 boinc boinc      4096 Oct 13 15:39 shared
[2025-10-13 16:35:21] -rw-r--r-- 2 boinc boinc    569685 Oct 13 15:39 input.tar.gz
[2025-10-13 16:35:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:39 boinc_lockfile
[2025-10-13 16:35:21] -rw-r--r-- 1 boinc boinc      2549 Oct 13 15:39 pandaJob.out
[2025-10-13 16:35:21] -rw------- 1 boinc boinc    972489 Oct 13 15:40 agis_schedconf.cvmfs.json
[2025-10-13 16:35:21] -rw------- 1 boinc boinc   1560580 Oct 13 15:40 agis_ddmendpoints.agis.ALL.json
[2025-10-13 16:35:21] drwx------ 5 boinc boinc      4096 Oct 13 15:40 pilot3
[2025-10-13 16:35:21] -rw------- 1 boinc boinc 194802493 Oct 13 16:33 HITS.46676269._095675.pool.root.1
[2025-10-13 16:35:21] -rw-r--r-- 1 boinc boinc       529 Oct 13 16:33 boinc_task_state.xml
[2025-10-13 16:35:21] -rw------- 1 boinc boinc        95 Oct 13 16:34 pilot_heartbeat.json
[2025-10-13 16:35:21] -rw------- 1 boinc boinc      1018 Oct 13 16:34 memory_monitor_summary.json
[2025-10-13 16:35:21] -rw------- 1 boinc boinc    370350 Oct 13 16:34 log.46676269._095675.job.log.tgz.1
[2025-10-13 16:35:21] -rw------- 1 boinc boinc      7773 Oct 13 16:34 heartbeat.json
[2025-10-13 16:35:21] -rw-r--r-- 1 boinc boinc      8192 Oct 13 16:35 boinc_mmap_file
[2025-10-13 16:35:21] -rw-r--r-- 1 boinc boinc        27 Oct 13 16:35 wrapper_checkpoint.txt
[2025-10-13 16:35:21] -rw------- 1 boinc boinc      4898 Oct 13 16:35 pilotlog.txt
[2025-10-13 16:35:21] -rw------- 1 boinc boinc    488600 Oct 13 16:35 log.46676269._095675.job.log.1
[2025-10-13 16:35:21] -rw------- 1 boinc boinc       357 Oct 13 16:35 output.list
[2025-10-13 16:35:21] -rw-r--r-- 1 boinc boinc       620 Oct 13 16:35 runtime_log
[2025-10-13 16:35:21] -rw------- 1 boinc boinc    880640 Oct 13 16:35 result.tar.gz
[2025-10-13 16:35:21] -rw-r--r-- 1 boinc boinc      8764 Oct 13 16:35 runtime_log.err
[2025-10-13 16:35:21] -rw------- 1 boinc boinc       663 Oct 13 16:35 pv9LDm2FOS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmWcVMDmfZTJrm.diag
[2025-10-13 16:35:21] -rw-r--r-- 1 boinc boinc     22569 Oct 13 16:35 stderr.txt
[2025-10-13 16:35:21] HITS file was successfully produced:
[2025-10-13 16:35:21] -rw------- 1 boinc boinc 194802493 Oct 13 16:33 shared/HITS.pool.root.1
[2025-10-13 16:35:21]  *** Contents of shared directory: ***
[2025-10-13 16:35:21] total 405736
[2025-10-13 16:35:21] -rw-r--r-- 2 boinc boinc 219188485 Oct 13 15:39 ATLAS.root_0
[2025-10-13 16:35:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:39 start_atlas.sh
[2025-10-13 16:35:21] -rw-r--r-- 2 boinc boinc    569685 Oct 13 15:39 input.tar.gz
[2025-10-13 16:35:21] -rw------- 1 boinc boinc 194802493 Oct 13 16:33 HITS.pool.root.1
[2025-10-13 16:35:21] -rw------- 1 boinc boinc    880640 Oct 13 16:35 result.tar.gz
16:35:22 (1356844): run_atlas exited; CPU time 34285.000526
16:35:22 (1356844): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN