Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:59:09 (2972437): wrapper (7.7.26015): starting
05:59:09 (2972437): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 05:59:09] Arguments: --nthreads 9
[2025-10-13 05:59:09] Threads: 9
[2025-10-13 05:59:09] Checking for CVMFS
[2025-10-13 05:59:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:59:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:59:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:59:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:59:10] 2.13.2.0 3269412 37018 378992 151656 2 376 28888044 40960000 23858 16776704 0 479748353 99.849 188045019 36740 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 05:59:10] CVMFS is ok
[2025-10-13 05:59:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:59:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:59:10] Further information can be found at the LHC@home message board.
[2025-10-13 05:59:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:59:10] Checking for apptainer binary...
[2025-10-13 05:59:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:59:10] Running /usr/bin/apptainer --version
[2025-10-13 05:59:10] apptainer version 1.4.3-1.el9
[2025-10-13 05:59:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:59:10] c8-16-2.aglt2.org
[2025-10-13 05:59:10] apptainer works
[2025-10-13 05:59:10] Set ATHENA_PROC_NUMBER=9
[2025-10-13 05:59:10] Set ATHENA_CORE_NUMBER=9
[2025-10-13 05:59:10] Starting ATLAS job with PandaID=6841495883
[2025-10-13 05:59:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:46:01]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:46:01]  workdir=None
[2025-10-13 06:46:01] ]
[2025-10-13 06:46:01] 2025-10-13 10:45:15,085 | INFO     | transferring file log.46676269._095214.job.log.tgz.1 from /tmp/boinchome/slots/7/PanDA_Pilot-6841495883/log.46676269._095214.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 06:46:01] 2025-10-13 10:45:15,085 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/7/PanDA_Pilot-6841495883/log.46676269._095214.job.log.tgz.1 /tmp/boinchome/slots/7/log.46676269._095214.job
[2025-10-13 06:46:01] 2025-10-13 10:45:15,098 | INFO     | adding to output.list: log.46676269._095214.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/c3/log.46676269._095214.job.log.tg
[2025-10-13 06:46:01] 2025-10-13 10:45:15,098 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 06:46:01] 2025-10-13 10:45:15,099 | INFO     | summary of transferred files:
[2025-10-13 06:46:01] 2025-10-13 10:45:15,099 | INFO     |  -- lfn=log.46676269._095214.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 06:46:01] 2025-10-13 10:45:15,099 | INFO     | stage-out finished correctly
[2025-10-13 06:46:01] 2025-10-13 10:45:15,642 | INFO     | time since job start (2754s) is within the limit (172800.0s)
[2025-10-13 06:46:01] 2025-10-13 10:45:15,857 | WARNING  | process 2991387 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 06:46:01] 2025-10-13 10:45:15,858 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6841495883/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:46:01] 2025-10-13 10:45:15,858 | INFO     | reaping zombies for max 20 seconds
[2025-10-13 06:46:01] 2025-10-13 10:45:15,869 | INFO     | checking for looping job (in state=finished)
[2025-10-13 06:46:01] 2025-10-13 10:45:15,869 | INFO     | using looping job limit: 7200 s
[2025-10-13 06:46:01] 2025-10-13 10:45:16,369 | INFO     | number of running child processes to parent process 2991387: 1
[2025-10-13 06:46:01] 2025-10-13 10:45:16,369 | INFO     | maximum number of monitored processes: 6
[2025-10-13 06:46:01] 2025-10-13 10:45:16,585 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 06:46:01] 2025-10-13 10:45:17,164 | INFO     | job 6841495883 has state=finished
[2025-10-13 06:46:01] 2025-10-13 10:45:17,165 | INFO     | preparing for final server update for job 6841495883 in state='finished'
[2025-10-13 06:46:01] 2025-10-13 10:45:17,165 | INFO     | this job has now completed (state=finished)
[2025-10-13 06:46:01] 2025-10-13 10:45:17,166 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 06:46:01] 2025-10-13 10:45:17,166 | INFO     | log transfer has been attempted: DONE
[2025-10-13 06:46:01] 2025-10-13 10:45:17,166 | INFO     | job 6841495883 has finished - writing final server update
[2025-10-13 06:46:01] 2025-10-13 10:45:17,166 | INFO     | total number of processed events: 400 (read)
[2025-10-13 06:46:01] 2025-10-13 10:45:17,166 | INFO     | executing command: lscpu
[2025-10-13 06:46:01] 2025-10-13 10:45:17,231 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 06:46:01] 2025-10-13 10:45:17,648 | INFO     | time since job start (2756s) is within the limit (172800.0s)
[2025-10-13 06:46:01] 2025-10-13 10:45:18,872 | INFO     | monitor loop #196: job 0:6841495883 is in state 'finished'
[2025-10-13 06:46:01] 2025-10-13 10:45:18,872 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:46:01] 2025-10-13 10:45:19,654 | INFO     | time since job start (2758s) is within the limit (172800.0s)
[2025-10-13 06:46:01] 2025-10-13 10:45:21,359 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 06:46:01] 2025-10-13 10:45:21,373 | INFO     | monitor loop #197: job 0:6841495883 is in state 'finished'
[2025-10-13 06:46:01] 2025-10-13 10:45:21,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:46:01] 2025-10-13 10:45:21,379 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3623.816328125
[2025-10-13 06:46:01] 2025-10-13 10:45:21,392 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6841495883/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:46:01] 2025-10-13 10:45:21,393 | INFO     | extracted standard info from prmon json
[2025-10-13 06:46:01] 2025-10-13 10:45:21,393 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 06:46:01] 2025-10-13 10:45:21,393 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 06:46:01] 2025-10-13 10:45:21,393 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:46:01] 2025-10-13 10:45:21,393 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:46:01] 2025-10-13 10:45:21,394 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:46:01] 2025-10-13 10:45:21,394 | INFO     | sum of square deviations: 17003109.5
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | sum of deviations: 676521445.5
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | mean x: 1760351021.5
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | mean y: 2202432.763157895
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | -- intersect: -70038822572.25616
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | intersect: -70038822572.25616
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | chi2: 0.007534119139613525
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | -- intersect: -70038822572.25616
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | current memory leak: 39.79 B/s (using 38 data points, chi2=0.01)
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | could have reported an average CPU frequency of 3720 MHz (5 samples)
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | ..............................
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | . Timing measurements:
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | . get job = 0 s
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | . initial setup = 2 s
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | . payload setup = 6 s
[2025-10-13 06:46:01] 2025-10-13 10:45:21,395 | INFO     | . stage-in = 0 s
[2025-10-13 06:46:01] 2025-10-13 10:45:21,396 | INFO     | . payload execution = 2728 s
[2025-10-13 06:46:01] 2025-10-13 10:45:21,396 | INFO     | . stage-out = 0 s
[2025-10-13 06:46:01] 2025-10-13 10:45:21,396 | INFO     | . log creation = 0 s
[2025-10-13 06:46:01] 2025-10-13 10:45:21,396 | INFO     | ..............................
[2025-10-13 06:46:01] 2025-10-13 10:45:21,456 | INFO     | 
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | job summary report
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | --------------------------------------------------
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | PanDA job id: 6841495883
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | task id: 46676269
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | errors: (none)
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | pilot state: finished 
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | transexitcode: 0
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | exeerrorcode: 0
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | exeerrordiag: 
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | exitcode: 0
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | exitmsg: OK
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | cpuconsumptiontime: 22363 s
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | nevents: 400
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | neventsw: 0
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | pid: 2991387
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | pgrp: 2991387
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | corecount: 9
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | event service: False
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | sizes: {0: 2348636, 1: 2348835, 5: 2349097, 11: 2349153, 2737: 2374591, 2738: 2383589, 2740: 2383773, 2745: 2383999}
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | --------------------------------------------------
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | 
[2025-10-13 06:46:01] 2025-10-13 10:45:21,457 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-10-13 06:46:01] 2025-10-13 10:45:21,476 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,476 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,476 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,476 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,476 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,476 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,476 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,476 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,476 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,476 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,476 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,476 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,477 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,477 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,477 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,477 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,477 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,477 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:46:01] 2025-10-13 10:45:21,477 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,477 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:46:01] 2025-10-13 10:45:21,477 | INFO     | job 6841495883 has completed (purged errors)
[2025-10-13 06:46:01] 2025-10-13 10:45:21,477 | INFO     | overall cleanup function is called
[2025-10-13 06:46:01] 2025-10-13 10:45:22,485 | INFO     | --- collectZombieJob: --- 10, [2991387]
[2025-10-13 06:46:01] 2025-10-13 10:45:22,485 | INFO     | zombie collector waiting for pid 2991387
[2025-10-13 06:46:01] 2025-10-13 10:45:22,485 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:46:01] 2025-10-13 10:45:22,485 | INFO     | collected zombie processes
[2025-10-13 06:46:01] 2025-10-13 10:45:22,485 | INFO     | will attempt to kill all subprocesses of pid=2991387
[2025-10-13 06:46:01] 2025-10-13 10:45:22,992 | INFO     | process IDs to be killed: [2991387] (in reverse order)
[2025-10-13 06:46:01] 2025-10-13 10:45:23,228 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:46:01] 2025-10-13 10:45:23,228 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:46:01] 2025-10-13 10:45:23,260 | INFO     | did not find any defunct processes belonging to 2991387
[2025-10-13 06:46:01] 2025-10-13 10:45:23,287 | INFO     | did not find any defunct processes belonging to 2991387
[2025-10-13 06:46:01] 2025-10-13 10:45:23,287 | INFO     | ready for new job
[2025-10-13 06:46:01] 2025-10-13 10:45:23,288 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:46:01] 2025-10-13 10:45:23,289 | INFO     | ***************************************
[2025-10-13 06:46:01] 2025-10-13 10:45:23,291 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:46:01] 2025-10-13 10:45:23,291 | INFO     | ***************************************
[2025-10-13 06:46:01] 2025-10-13 10:45:23,291 | INFO     | 
[2025-10-13 06:46:01] 2025-10-13 10:45:23,307 | INFO     | architecture information:
[2025-10-13 06:46:01] 2025-10-13 10:45:23,308 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:46:01] 2025-10-13 10:45:23,322 | INFO     | cat /etc/os-release:
[2025-10-13 06:46:01] NAME="CentOS Linux"
[2025-10-13 06:46:01] VERSION="7 (Core)"
[2025-10-13 06:46:01] ID="centos"
[2025-10-13 06:46:01] ID_LIKE="rhel fedora"
[2025-10-13 06:46:01] VERSION_ID="7"
[2025-10-13 06:46:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:46:01] ANSI_COLOR="0;31"
[2025-10-13 06:46:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:46:01] HOME_URL="https://www.centos.org/"
[2025-10-13 06:46:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:46:01] 
[2025-10-13 06:46:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:46:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:46:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:46:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:46:01] 
[2025-10-13 06:46:01] 2025-10-13 10:45:23,323 | INFO     | ***************************************
[2025-10-13 06:46:01] 2025-10-13 10:45:23,825 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-10-13 06:46:01] 2025-10-13 10:45:23,843 | INFO     | sufficient remaining disk space (167353778176 B)
[2025-10-13 06:46:01] 2025-10-13 10:45:23,844 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:46:01] 2025-10-13 10:45:23,844 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:46:01] 2025-10-13 10:45:23,844 | INFO     | update_server=False
[2025-10-13 06:46:01] 2025-10-13 10:45:23,844 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:46:01] 2025-10-13 10:45:23,844 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:46:01] 2025-10-13 10:45:23,876 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 06:46:01] 2025-10-13 10:45:23,876 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 06:46:01] 2025-10-13 10:45:23,876 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:46:01] 2025-10-13 10:45:23,876 | INFO     | will abort loop
[2025-10-13 06:46:01] 2025-10-13 10:45:24,767 | INFO     | all job control threads have been joined
[2025-10-13 06:46:01] 2025-10-13 10:45:24,849 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:24,866 | INFO     | all data control threads have been joined
[2025-10-13 06:46:01] 2025-10-13 10:45:24,881 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:24,883 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:24,888 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:25,048 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:25,167 | INFO     | all payload control threads have been joined
[2025-10-13 06:46:01] 2025-10-13 10:45:25,192 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:46:01] 2025-10-13 10:45:25,354 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:25,691 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:25,773 | INFO     | [job] control thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:25,850 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:25,872 | INFO     | [data] control thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:26,172 | INFO     | [payload] control thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:26,318 | INFO     | [job] validate thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:26,443 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:26,467 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:46:01] 2025-10-13 10:45:27,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:46:01] 2025-10-13 10:45:27,472 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:31,154 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:34,064 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:46:01] 2025-10-13 10:45:35,069 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:46:01] 2025-10-13 10:45:37,066 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140519341340480)>', '<ExcThread(monitor, started 140518713456384)>']
[2025-10-13 06:46:01] 2025-10-13 10:45:42,092 | INFO     | all workflow threads have been joined
[2025-10-13 06:46:01] 2025-10-13 10:45:42,093 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:46:01] 2025-10-13 10:45:42,093 | INFO     | traces error code: 0
[2025-10-13 06:46:01] 2025-10-13 10:45:42,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:46:01] 2025-10-13 10:45:53,519 | INFO     | PID=2976338 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 06:46:01] 2025-10-13 10:45:53,519 | INFO     | .. there are 36 such processes running
[2025-10-13 06:46:01] 2025-10-13 10:45:53,519 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:46:01] 2025-10-13 10:45:53,519 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:46:01] 2025-10-13 10:45:53,519 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:46:01] 2025-10-13 10:45:53,519 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:46:01] 2025-10-13 10:45:53,519 | INFO     | [monitor] control thread has ended
[2025-10-13 06:46:01] 2025-10-13 10:45:53,693 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:46:01] 2025-10-13 10:45:53,696 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:46:01] 2025-10-13 10:45:53,698 [wrapper] pilotpid: 2976338
[2025-10-13 06:46:01] 2025-10-13 10:45:53,700 [wrapper] Pilot exit status: 0
[2025-10-13 06:46:01] 2025-10-13 10:45:53,709 [wrapper] pandaids: 6841495883
[2025-10-13 06:46:01] 2025-10-13 10:45:53,864 [wrapper] cleanup supervisor_pilot 3343285 2976339
[2025-10-13 06:46:01] 2025-10-13 10:45:53,866 [wrapper] Test setup, not cleaning
[2025-10-13 06:46:01] 2025-10-13 10:45:53,869 [wrapper] apfmon messages muted
[2025-10-13 06:46:01] 2025-10-13 10:45:53,871 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:46:01] 2025-10-13 10:45:53,873 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:46:01]  *** Error codes and diagnostics ***
[2025-10-13 06:46:01]     "exeErrorCode": 0,
[2025-10-13 06:46:01]     "exeErrorDiag": "",
[2025-10-13 06:46:01]     "pilotErrorCode": 0,
[2025-10-13 06:46:01]     "pilotErrorDiag": "",
[2025-10-13 06:46:01]  *** Listing of results directory ***
[2025-10-13 06:46:01] total 417616
[2025-10-13 06:46:01] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 22:00 pilot3.tar.gz
[2025-10-13 06:46:01] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 22:45 queuedata.json
[2025-10-13 06:46:01] -rwx------. 1 boincer umatlas     36292 Oct 12 22:45 runpilot2-wrapper.sh
[2025-10-13 06:46:01] -rw-r--r--. 1 boincer umatlas       100 Oct 13 05:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:46:01] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 05:59 run_atlas
[2025-10-13 06:46:01] -rw-r--r--. 1 boincer umatlas       105 Oct 13 05:59 job.xml
[2025-10-13 06:46:01] -rw-r--r--. 2 boincer umatlas 221246939 Oct 13 05:59 EVNT.46676267._002245.pool.root.1
[2025-10-13 06:46:01] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 05:59 shared
[2025-10-13 06:46:01] -rw-r--r--. 2 boincer umatlas    569683 Oct 13 05:59 input.tar.gz
[2025-10-13 06:46:01] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 05:59 start_atlas.sh
[2025-10-13 06:46:01] -rw-r--r--. 1 boincer umatlas         0 Oct 13 05:59 boinc_lockfile
[2025-10-13 06:46:01] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 05:59 pandaJob.out
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas    972849 Oct 13 05:59 agis_schedconf.cvmfs.json
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas   1560580 Oct 13 05:59 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:46:01] drwx------. 5 boincer umatlas      4096 Oct 13 05:59 pilot3
[2025-10-13 06:46:01] -rw-r--r--. 1 boincer umatlas      7163 Oct 13 06:36 init_data.xml
[2025-10-13 06:46:01] -rw-r--r--. 1 boincer umatlas       530 Oct 13 06:44 boinc_task_state.xml
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas 200997769 Oct 13 06:44 HITS.46676269._095214.pool.root.1
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas        95 Oct 13 06:45 pilot_heartbeat.json
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas      1033 Oct 13 06:45 memory_monitor_summary.json
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas    326947 Oct 13 06:45 log.46676269._095214.job.log.tgz.1
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas      7772 Oct 13 06:45 heartbeat.json
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas       823 Oct 13 06:45 pilotlog.txt
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas    421584 Oct 13 06:45 log.46676269._095214.job.log.1
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas       357 Oct 13 06:45 output.list
[2025-10-13 06:46:01] -rw-r--r--. 1 boincer umatlas       620 Oct 13 06:45 runtime_log
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas    768000 Oct 13 06:45 result.tar.gz
[2025-10-13 06:46:01] -rw-r--r--. 1 boincer umatlas      8698 Oct 13 06:45 runtime_log.err
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas       650 Oct 13 06:45 LUkLDmIkNS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmxZVMDmOuVzIn.diag
[2025-10-13 06:46:01] -rw-r--r--. 1 boincer umatlas        27 Oct 13 06:45 wrapper_checkpoint.txt
[2025-10-13 06:46:01] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 06:46 boinc_mmap_file
[2025-10-13 06:46:01] -rw-r--r--. 1 boincer umatlas     22181 Oct 13 06:46 stderr.txt
[2025-10-13 06:46:01] HITS file was successfully produced:
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas 200997769 Oct 13 06:44 shared/HITS.pool.root.1
[2025-10-13 06:46:01]  *** Contents of shared directory: ***
[2025-10-13 06:46:01] total 413688
[2025-10-13 06:46:01] -rw-r--r--. 2 boincer umatlas 221246939 Oct 13 05:59 ATLAS.root_0
[2025-10-13 06:46:01] -rw-r--r--. 2 boincer umatlas    569683 Oct 13 05:59 input.tar.gz
[2025-10-13 06:46:01] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 05:59 start_atlas.sh
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas 200997769 Oct 13 06:44 HITS.pool.root.1
[2025-10-13 06:46:01] -rw-------. 1 boincer umatlas    768000 Oct 13 06:45 result.tar.gz
06:46:02 (2972437): run_atlas exited; CPU time 22464.327268
06:46:02 (2972437): called boinc_finish(0)

</stderr_txt>
]]>

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