Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:44:28 (23265): wrapper (7.7.26015): starting
05:44:28 (23265): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 05:44:28] Arguments: --nthreads 12
[2025-10-13 05:44:28] Threads: 12
[2025-10-13 05:44:28] Checking for CVMFS
[2025-10-13 05:44:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:44:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:44:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:44:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:44:28] 2.11.2.0 2979 224158 104236 151656 2 57 16633159 20275200 1 130560 2 109930062 99.984 13085119 12036 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 05:44:28] CVMFS is ok
[2025-10-13 05:44:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:44:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:44:28] Further information can be found at the LHC@home message board.
[2025-10-13 05:44:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:44:28] Checking for apptainer binary...
[2025-10-13 05:44:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:44:28] Running /usr/bin/apptainer --version
[2025-10-13 05:44:28] apptainer version 1.3.2-1.el7
[2025-10-13 05:44:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:44:30] c-205-7.aglt2.org
[2025-10-13 05:44:30] apptainer works
[2025-10-13 05:44:30] Set ATHENA_PROC_NUMBER=12
[2025-10-13 05:44:30] Set ATHENA_CORE_NUMBER=12
[2025-10-13 05:44:30] Starting ATLAS job with PandaID=6841069803
[2025-10-13 05:44:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:57:58]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:57:58]  storage_token=
[2025-10-13 06:57:58]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6841069803/log.46676269._093843.job.log.tgz.1
[2025-10-13 06:57:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/e9/log.46676269._093843.job.log.tgz.1
[2025-10-13 06:57:58]  workdir=None
[2025-10-13 06:57:58] ]
[2025-10-13 06:57:58] 2025-10-13 10:56:59,942 | INFO     | transferring file log.46676269._093843.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6841069803/log.46676269._093843.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 06:57:58] 2025-10-13 10:56:59,942 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6841069803/log.46676269._093843.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._093843.job
[2025-10-13 06:57:58] 2025-10-13 10:56:59,965 | INFO     | adding to output.list: log.46676269._093843.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/e9/log.46676269._093843.job.log.tg
[2025-10-13 06:57:58] 2025-10-13 10:56:59,966 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 06:57:58] 2025-10-13 10:56:59,966 | INFO     | summary of transferred files:
[2025-10-13 06:57:58] 2025-10-13 10:56:59,966 | INFO     |  -- lfn=log.46676269._093843.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 06:57:58] 2025-10-13 10:56:59,966 | INFO     | stage-out finished correctly
[2025-10-13 06:57:58] 2025-10-13 10:57:00,390 | INFO     | monitor loop #322: job 0:6841069803 is in state 'finished'
[2025-10-13 06:57:58] 2025-10-13 10:57:00,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:57:58] 2025-10-13 10:57:00,509 | INFO     | time since job start (4335s) is within the limit (172800.0s)
[2025-10-13 06:57:58] 2025-10-13 10:57:01,878 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 06:57:58] 2025-10-13 10:57:02,514 | INFO     | time since job start (4337s) is within the limit (172800.0s)
[2025-10-13 06:57:58] 2025-10-13 10:57:02,893 | INFO     | monitor loop #323: job 0:6841069803 is in state 'finished'
[2025-10-13 06:57:58] 2025-10-13 10:57:02,893 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:57:58] 2025-10-13 10:57:03,643 | INFO     | job 6841069803 has state=finished
[2025-10-13 06:57:58] 2025-10-13 10:57:03,643 | INFO     | preparing for final server update for job 6841069803 in state='finished'
[2025-10-13 06:57:58] 2025-10-13 10:57:03,644 | INFO     | this job has now completed (state=finished)
[2025-10-13 06:57:58] 2025-10-13 10:57:03,644 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 06:57:58] 2025-10-13 10:57:03,644 | INFO     | log transfer has been attempted: DONE
[2025-10-13 06:57:58] 2025-10-13 10:57:03,645 | INFO     | job 6841069803 has finished - writing final server update
[2025-10-13 06:57:58] 2025-10-13 10:57:03,645 | INFO     | total number of processed events: 400 (read)
[2025-10-13 06:57:58] 2025-10-13 10:57:03,646 | INFO     | executing command: lscpu
[2025-10-13 06:57:58] 2025-10-13 10:57:03,681 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 06:57:58] 2025-10-13 10:57:04,520 | INFO     | time since job start (4339s) is within the limit (172800.0s)
[2025-10-13 06:57:58] 2025-10-13 10:57:05,396 | INFO     | monitor loop #324: job 0:6841069803 is in state 'finished'
[2025-10-13 06:57:58] 2025-10-13 10:57:05,397 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:57:58] 2025-10-13 10:57:06,526 | INFO     | time since job start (4341s) is within the limit (172800.0s)
[2025-10-13 06:57:58] 2025-10-13 10:57:07,900 | INFO     | monitor loop #325: job 0:6841069803 is in state 'finished'
[2025-10-13 06:57:58] 2025-10-13 10:57:07,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:57:58] 2025-10-13 10:57:08,402 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 06:57:58] 2025-10-13 10:57:08,406 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-13 06:57:58] 2025-10-13 10:57:08,408 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841069803/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:57:58] 2025-10-13 10:57:08,408 | INFO     | extracted standard info from prmon json
[2025-10-13 06:57:58] 2025-10-13 10:57:08,409 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 06:57:58] 2025-10-13 10:57:08,409 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 06:57:58] 2025-10-13 10:57:08,409 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:57:58] 2025-10-13 10:57:08,409 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:57:58] 2025-10-13 10:57:08,411 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:57:58] 2025-10-13 10:57:08,411 | INFO     | sum of square deviations: 81266640.0
[2025-10-13 06:57:58] 2025-10-13 10:57:08,411 | INFO     | sum of deviations: -5679158956.5
[2025-10-13 06:57:58] 2025-10-13 10:57:08,411 | INFO     | mean x: 1760350940.5
[2025-10-13 06:57:58] 2025-10-13 10:57:08,412 | INFO     | mean y: 2741510.203125
[2025-10-13 06:57:58] 2025-10-13 10:57:08,412 | INFO     | -- intersect: 123021397262.72067
[2025-10-13 06:57:58] 2025-10-13 10:57:08,412 | INFO     | intersect: 123021397262.72067
[2025-10-13 06:57:58] 2025-10-13 10:57:08,412 | INFO     | chi2: 0.05111284537017888
[2025-10-13 06:57:58] 2025-10-13 10:57:08,412 | INFO     | -- intersect: 123021397262.72067
[2025-10-13 06:57:58] 2025-10-13 10:57:08,412 | INFO     | current memory leak: -69.88 B/s (using 64 data points, chi2=0.05)
[2025-10-13 06:57:58] 2025-10-13 10:57:08,412 | INFO     | could have reported an average CPU frequency of 2054 MHz (6 samples)
[2025-10-13 06:57:58] 2025-10-13 10:57:08,413 | INFO     | ..............................
[2025-10-13 06:57:58] 2025-10-13 10:57:08,413 | INFO     | . Timing measurements:
[2025-10-13 06:57:58] 2025-10-13 10:57:08,413 | INFO     | . get job = 0 s
[2025-10-13 06:57:58] 2025-10-13 10:57:08,413 | INFO     | . initial setup = 2 s
[2025-10-13 06:57:58] 2025-10-13 10:57:08,413 | INFO     | . payload setup = 7 s
[2025-10-13 06:57:58] 2025-10-13 10:57:08,413 | INFO     | . stage-in = 0 s
[2025-10-13 06:57:58] 2025-10-13 10:57:08,413 | INFO     | . payload execution = 4306 s
[2025-10-13 06:57:58] 2025-10-13 10:57:08,413 | INFO     | . stage-out = 0 s
[2025-10-13 06:57:58] 2025-10-13 10:57:08,413 | INFO     | . log creation = 0 s
[2025-10-13 06:57:58] 2025-10-13 10:57:08,414 | INFO     | ..............................
[2025-10-13 06:57:58] 2025-10-13 10:57:08,496 | INFO     | 
[2025-10-13 06:57:58] 2025-10-13 10:57:08,497 | INFO     | job summary report
[2025-10-13 06:57:58] 2025-10-13 10:57:08,497 | INFO     | --------------------------------------------------
[2025-10-13 06:57:58] 2025-10-13 10:57:08,497 | INFO     | PanDA job id: 6841069803
[2025-10-13 06:57:58] 2025-10-13 10:57:08,497 | INFO     | task id: 46676269
[2025-10-13 06:57:58] 2025-10-13 10:57:08,497 | INFO     | errors: (none)
[2025-10-13 06:57:58] 2025-10-13 10:57:08,497 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:57:58] 2025-10-13 10:57:08,498 | INFO     | pilot state: finished 
[2025-10-13 06:57:58] 2025-10-13 10:57:08,498 | INFO     | transexitcode: 0
[2025-10-13 06:57:58] 2025-10-13 10:57:08,498 | INFO     | exeerrorcode: 0
[2025-10-13 06:57:58] 2025-10-13 10:57:08,498 | INFO     | exeerrordiag: 
[2025-10-13 06:57:58] 2025-10-13 10:57:08,498 | INFO     | exitcode: 0
[2025-10-13 06:57:58] 2025-10-13 10:57:08,498 | INFO     | exitmsg: OK
[2025-10-13 06:57:58] 2025-10-13 10:57:08,499 | INFO     | cpuconsumptiontime: 45969 s
[2025-10-13 06:57:58] 2025-10-13 10:57:08,499 | INFO     | nevents: 400
[2025-10-13 06:57:58] 2025-10-13 10:57:08,499 | INFO     | neventsw: 0
[2025-10-13 06:57:58] 2025-10-13 10:57:08,499 | INFO     | pid: 1010
[2025-10-13 06:57:58] 2025-10-13 10:57:08,499 | INFO     | pgrp: 1010
[2025-10-13 06:57:58] 2025-10-13 10:57:08,499 | INFO     | corecount: 12
[2025-10-13 06:57:58] 2025-10-13 10:57:08,500 | INFO     | event service: False
[2025-10-13 06:57:58] 2025-10-13 10:57:08,500 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4317: 2375222, 4318: 2384220, 4320: 2384276, 4327: 2384598}
[2025-10-13 06:57:58] 2025-10-13 10:57:08,500 | INFO     | --------------------------------------------------
[2025-10-13 06:57:58] 2025-10-13 10:57:08,500 | INFO     | 
[2025-10-13 06:57:58] 2025-10-13 10:57:08,500 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 06:57:58] 2025-10-13 10:57:08,521 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,522 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,522 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,522 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,522 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,523 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,523 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,523 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,523 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,523 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,523 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,524 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,524 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,524 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,524 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,524 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,524 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,525 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:57:58] 2025-10-13 10:57:08,525 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,525 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:57:58] 2025-10-13 10:57:08,525 | INFO     | job 6841069803 has completed (purged errors)
[2025-10-13 06:57:58] 2025-10-13 10:57:08,525 | INFO     | overall cleanup function is called
[2025-10-13 06:57:58] 2025-10-13 10:57:09,534 | INFO     | --- collectZombieJob: --- 10, [1010]
[2025-10-13 06:57:58] 2025-10-13 10:57:09,534 | INFO     | zombie collector waiting for pid 1010
[2025-10-13 06:57:58] 2025-10-13 10:57:09,534 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:57:58] 2025-10-13 10:57:09,534 | INFO     | collected zombie processes
[2025-10-13 06:57:58] 2025-10-13 10:57:09,534 | INFO     | will attempt to kill all subprocesses of pid=1010
[2025-10-13 06:57:58] 2025-10-13 10:57:09,625 | INFO     | process IDs to be killed: [1010] (in reverse order)
[2025-10-13 06:57:58] 2025-10-13 10:57:09,678 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:57:58] 2025-10-13 10:57:09,678 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:57:58] 2025-10-13 10:57:09,682 | INFO     | did not find any defunct processes belonging to 1010
[2025-10-13 06:57:58] 2025-10-13 10:57:09,686 | INFO     | did not find any defunct processes belonging to 1010
[2025-10-13 06:57:58] 2025-10-13 10:57:09,686 | INFO     | ready for new job
[2025-10-13 06:57:58] 2025-10-13 10:57:09,686 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:57:58] 2025-10-13 10:57:09,687 | INFO     | ***************************************
[2025-10-13 06:57:58] 2025-10-13 10:57:09,687 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:57:58] 2025-10-13 10:57:09,688 | INFO     | ***************************************
[2025-10-13 06:57:58] 2025-10-13 10:57:09,688 | INFO     | 
[2025-10-13 06:57:58] 2025-10-13 10:57:09,688 | INFO     | architecture information:
[2025-10-13 06:57:58] 2025-10-13 10:57:09,689 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:57:58] 2025-10-13 10:57:09,704 | INFO     | cat /etc/os-release:
[2025-10-13 06:57:58] NAME="CentOS Linux"
[2025-10-13 06:57:58] VERSION="7 (Core)"
[2025-10-13 06:57:58] ID="centos"
[2025-10-13 06:57:58] ID_LIKE="rhel fedora"
[2025-10-13 06:57:58] VERSION_ID="7"
[2025-10-13 06:57:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:57:58] ANSI_COLOR="0;31"
[2025-10-13 06:57:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:57:58] HOME_URL="https://www.centos.org/"
[2025-10-13 06:57:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:57:58] 
[2025-10-13 06:57:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:57:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:57:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:57:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:57:58] 
[2025-10-13 06:57:58] 2025-10-13 10:57:09,704 | INFO     | ***************************************
[2025-10-13 06:57:58] 2025-10-13 10:57:10,207 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 06:57:58] 2025-10-13 10:57:10,224 | INFO     | sufficient remaining disk space (29369565184 B)
[2025-10-13 06:57:58] 2025-10-13 10:57:10,224 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:57:58] 2025-10-13 10:57:10,225 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:57:58] 2025-10-13 10:57:10,225 | INFO     | update_server=False
[2025-10-13 06:57:58] 2025-10-13 10:57:10,225 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:57:58] 2025-10-13 10:57:10,225 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:57:58] 2025-10-13 10:57:10,403 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 06:57:58] 2025-10-13 10:57:10,403 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 06:57:58] 2025-10-13 10:57:10,404 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:57:58] 2025-10-13 10:57:10,404 | INFO     | will abort loop
[2025-10-13 06:57:58] 2025-10-13 10:57:10,565 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:57:58] 2025-10-13 10:57:11,076 | INFO     | all data control threads have been joined
[2025-10-13 06:57:58] 2025-10-13 10:57:11,186 | INFO     | all payload control threads have been joined
[2025-10-13 06:57:58] 2025-10-13 10:57:11,230 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:11,231 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:11,246 | INFO     | all job control threads have been joined
[2025-10-13 06:57:58] 2025-10-13 10:57:11,409 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:11,427 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:11,763 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:12,081 | INFO     | [data] control thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:12,098 | INFO     | [job] validate thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:12,191 | INFO     | [payload] control thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:12,252 | INFO     | [job] control thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:12,393 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:12,420 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:12,454 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:12,469 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:57:58] 2025-10-13 10:57:12,570 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:12,669 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:16,475 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:21,135 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:57:58] 2025-10-13 10:57:22,137 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:57:58] 2025-10-13 10:57:39,734 | INFO     | PID=26964 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 06:57:58] 2025-10-13 10:57:39,734 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:57:58] 2025-10-13 10:57:39,734 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:57:58] 2025-10-13 10:57:39,735 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:57:58] 2025-10-13 10:57:51,876 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:57:58] 2025-10-13 10:57:53,290 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140561323210560)>', '<ExcThread(monitor, started 140561017186048)>']
[2025-10-13 06:57:58] 2025-10-13 10:57:53,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:57:58] 2025-10-13 10:57:53,806 | INFO     | [monitor] control thread has ended
[2025-10-13 06:57:58] 2025-10-13 10:57:58,313 | INFO     | all workflow threads have been joined
[2025-10-13 06:57:58] 2025-10-13 10:57:58,313 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:57:58] 2025-10-13 10:57:58,314 | INFO     | traces error code: 0
[2025-10-13 06:57:58] 2025-10-13 10:57:58,314 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:57:58] 2025-10-13 10:57:58,399 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:57:58] 2025-10-13 10:57:58,403 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:57:58] 2025-10-13 10:57:58,407 [wrapper] pilotpid: 26964
[2025-10-13 06:57:58] 2025-10-13 10:57:58,411 [wrapper] Pilot exit status: 0
[2025-10-13 06:57:58] 2025-10-13 10:57:58,425 [wrapper] pandaids: 6841069803
[2025-10-13 06:57:58] 2025-10-13 10:57:58,470 [wrapper] cleanup supervisor_pilot  1339 26965
[2025-10-13 06:57:58] 2025-10-13 10:57:58,474 [wrapper] Test setup, not cleaning
[2025-10-13 06:57:58] 2025-10-13 10:57:58,478 [wrapper] apfmon messages muted
[2025-10-13 06:57:58] 2025-10-13 10:57:58,482 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:57:58] 2025-10-13 10:57:58,486 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:57:58]  *** Error codes and diagnostics ***
[2025-10-13 06:57:58]     "exeErrorCode": 0,
[2025-10-13 06:57:58]     "exeErrorDiag": "",
[2025-10-13 06:57:58]     "pilotErrorCode": 0,
[2025-10-13 06:57:58]     "pilotErrorDiag": "",
[2025-10-13 06:57:58]  *** Listing of results directory ***
[2025-10-13 06:57:58] total 406812
[2025-10-13 06:57:58] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 20:48 pilot3.tar.gz
[2025-10-13 06:57:58] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 21:03 queuedata.json
[2025-10-13 06:57:58] -rwx------ 1 boincer umatlas     36292 Oct 12 21:05 runpilot2-wrapper.sh
[2025-10-13 06:57:58] -rw-r--r-- 1 boincer umatlas       100 Oct 13 05:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:57:58] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 05:44 run_atlas
[2025-10-13 06:57:58] -rw-r--r-- 1 boincer umatlas       105 Oct 13 05:44 job.xml
[2025-10-13 06:57:58] -rw-r--r-- 2 boincer umatlas 221343283 Oct 13 05:44 EVNT.46676267._004720.pool.root.1
[2025-10-13 06:57:58] -rw-r--r-- 2 boincer umatlas    569684 Oct 13 05:44 input.tar.gz
[2025-10-13 06:57:58] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 05:44 start_atlas.sh
[2025-10-13 06:57:58] drwxrwx--x 2 boincer umatlas      4096 Oct 13 05:44 shared
[2025-10-13 06:57:58] -rw-r--r-- 1 boincer umatlas         0 Oct 13 05:44 boinc_lockfile
[2025-10-13 06:57:58] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 05:44 pandaJob.out
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas    972849 Oct 13 05:44 agis_schedconf.cvmfs.json
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas   1560580 Oct 13 05:44 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:57:58] drwx------ 5 boincer umatlas      4096 Oct 13 05:44 pilot3
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas 189302220 Oct 13 06:56 HITS.46676269._093843.pool.root.1
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas        95 Oct 13 06:56 pilot_heartbeat.json
[2025-10-13 06:57:58] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 06:56 init_data.xml
[2025-10-13 06:57:58] -rw-r--r-- 1 boincer umatlas       529 Oct 13 06:56 boinc_task_state.xml
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas      1050 Oct 13 06:56 memory_monitor_summary.json
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas    388459 Oct 13 06:56 log.46676269._093843.job.log.tgz.1
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas      7858 Oct 13 06:57 heartbeat.json
[2025-10-13 06:57:58] -rw-r--r-- 1 boincer umatlas        27 Oct 13 06:57 wrapper_checkpoint.txt
[2025-10-13 06:57:58] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 06:57 boinc_mmap_file
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas      5004 Oct 13 06:57 pilotlog.txt
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas    630700 Oct 13 06:57 log.46676269._093843.job.log.1
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas       357 Oct 13 06:57 output.list
[2025-10-13 06:57:58] -rw-r--r-- 1 boincer umatlas       620 Oct 13 06:57 runtime_log
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas   1034240 Oct 13 06:57 result.tar.gz
[2025-10-13 06:57:58] -rw-r--r-- 1 boincer umatlas      8700 Oct 13 06:57 runtime_log.err
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas       658 Oct 13 06:57 kxyKDmUBMS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5JmNDmk7j9No.diag
[2025-10-13 06:57:58] -rw-r--r-- 1 boincer umatlas     22130 Oct 13 06:57 stderr.txt
[2025-10-13 06:57:58] HITS file was successfully produced:
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas 189302220 Oct 13 06:56 shared/HITS.pool.root.1
[2025-10-13 06:57:58]  *** Contents of shared directory: ***
[2025-10-13 06:57:58] total 402616
[2025-10-13 06:57:58] -rw-r--r-- 2 boincer umatlas 221343283 Oct 13 05:44 ATLAS.root_0
[2025-10-13 06:57:58] -rw-r--r-- 2 boincer umatlas    569684 Oct 13 05:44 input.tar.gz
[2025-10-13 06:57:58] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 05:44 start_atlas.sh
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas 189302220 Oct 13 06:56 HITS.pool.root.1
[2025-10-13 06:57:58] -rw------- 1 boincer umatlas   1034240 Oct 13 06:57 result.tar.gz
06:58:00 (23265): run_atlas exited; CPU time 45943.859601
06:58:00 (23265): called boinc_finish(0)

</stderr_txt>
]]>

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