Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
17:34:44 (1984788): wrapper (7.7.26015): starting
17:34:44 (1984788): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 17:34:44] Arguments: --nthreads 8
[2025-10-13 17:34:44] Threads: 8
[2025-10-13 17:34:44] Checking for CVMFS
[2025-10-13 17:34:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 17:34:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 17:34:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 17:34:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 17:34:45] 2.11.5.0 1942209 1 51300 151666 2 186 2742845 4194305 1801 130560 0 102656 99.984 2772 1945 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-13 17:34:45] CVMFS is ok
[2025-10-13 17:34:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:34:45] Checking for apptainer binary...
[2025-10-13 17:34:45] apptainer is not installed, using version from CVMFS
[2025-10-13 17:34:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:34:45] mikemint-desktop
[2025-10-13 17:34:45] apptainer works
[2025-10-13 17:34:45] Set ATHENA_PROC_NUMBER=8
[2025-10-13 17:34:45] Set ATHENA_CORE_NUMBER=8
[2025-10-13 17:34:45] Starting ATLAS job with PandaID=6842182994
[2025-10-13 17:34:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/56 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:40:12]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:40:12]  surl=/var/lib/boinc-client/slots/56/PanDA_Pilot-6842182994/log.46676269._095940.job.log.tgz.1
[2025-10-13 18:40:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/c8/log.46676269._095940.job.log.tgz.1
[2025-10-13 18:40:12]  workdir=None
[2025-10-13 18:40:12] ]
[2025-10-13 18:40:12] 2025-10-13 16:39:30,205 | INFO     | transferring file log.46676269._095940.job.log.tgz.1 from /var/lib/boinc-client/slots/56/PanDA_Pilot-6842182994/log.46676269._095940.job.log.tgz.1 to /var/lib/boin
[2025-10-13 18:40:12] 2025-10-13 16:39:30,205 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/56/PanDA_Pilot-6842182994/log.46676269._095940.job.log.tgz.1 /var/lib/boinc-client/slots/56/log.4667
[2025-10-13 18:40:12] 2025-10-13 16:39:30,224 | INFO     | adding to output.list: log.46676269._095940.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/c8/log.46676269._095940.job.log.tg
[2025-10-13 18:40:12] 2025-10-13 16:39:30,224 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 18:40:12] 2025-10-13 16:39:30,224 | INFO     | summary of transferred files:
[2025-10-13 18:40:12] 2025-10-13 16:39:30,224 | INFO     |  -- lfn=log.46676269._095940.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 18:40:12] 2025-10-13 16:39:30,225 | INFO     | stage-out finished correctly
[2025-10-13 18:40:12] 2025-10-13 16:39:30,725 | INFO     | time since job start (3875s) is within the limit (172800.0s)
[2025-10-13 18:40:12] 2025-10-13 16:39:32,729 | INFO     | time since job start (3877s) is within the limit (172800.0s)
[2025-10-13 18:40:12] 2025-10-13 16:39:32,946 | WARNING  | process 2010953 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 18:40:12] 2025-10-13 16:39:32,946 | INFO     | using path: /var/lib/boinc-client/slots/56/PanDA_Pilot-6842182994/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:40:12] 2025-10-13 16:39:33,204 | INFO     | number of running child processes to parent process 2010953: 1
[2025-10-13 18:40:12] 2025-10-13 16:39:33,204 | INFO     | maximum number of monitored processes: 6
[2025-10-13 18:40:12] 2025-10-13 16:39:33,693 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 18:40:12] 2025-10-13 16:39:33,873 | INFO     | job 6842182994 has state=finished
[2025-10-13 18:40:12] 2025-10-13 16:39:33,873 | INFO     | preparing for final server update for job 6842182994 in state='finished'
[2025-10-13 18:40:12] 2025-10-13 16:39:34,548 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-13 18:40:12] 2025-10-13 16:39:34,549 | INFO     | this job has now completed (state=finished)
[2025-10-13 18:40:12] 2025-10-13 16:39:34,549 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 18:40:12] 2025-10-13 16:39:34,549 | INFO     | log transfer has been attempted: DONE
[2025-10-13 18:40:12] 2025-10-13 16:39:34,549 | INFO     | job 6842182994 has finished - writing final server update
[2025-10-13 18:40:12] 2025-10-13 16:39:34,549 | INFO     | total number of processed events: 400 (read)
[2025-10-13 18:40:12] 2025-10-13 16:39:34,550 | INFO     | executing command: lscpu
[2025-10-13 18:40:12] 2025-10-13 16:39:34,633 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 18:40:12] 2025-10-13 16:39:34,734 | INFO     | time since job start (3879s) is within the limit (172800.0s)
[2025-10-13 18:40:12] 2025-10-13 16:39:35,707 | INFO     | monitor loop #286: job 0:6842182994 is in state 'finished'
[2025-10-13 18:40:12] 2025-10-13 16:39:35,707 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:40:12] 2025-10-13 16:39:36,737 | INFO     | time since job start (3881s) is within the limit (172800.0s)
[2025-10-13 18:40:12] 2025-10-13 16:39:38,209 | INFO     | monitor loop #287: job 0:6842182994 is in state 'finished'
[2025-10-13 18:40:12] 2025-10-13 16:39:38,209 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:40:12] 2025-10-13 16:39:38,741 | INFO     | time since job start (3883s) is within the limit (172800.0s)
[2025-10-13 18:40:12] 2025-10-13 16:39:38,831 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 18:40:12] 2025-10-13 16:39:38,848 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2398.1703203125003
[2025-10-13 18:40:12] 2025-10-13 16:39:38,867 | INFO     | using path: /var/lib/boinc-client/slots/56/PanDA_Pilot-6842182994/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:40:12] 2025-10-13 16:39:38,867 | INFO     | extracted standard info from prmon json
[2025-10-13 18:40:12] 2025-10-13 16:39:38,867 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 18:40:12] 2025-10-13 16:39:38,867 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 18:40:12] 2025-10-13 16:39:38,868 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 18:40:12] 2025-10-13 16:39:38,868 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 18:40:12] 2025-10-13 16:39:38,869 | INFO     | fitting pss+swap vs Time
[2025-10-13 18:40:12] 2025-10-13 16:39:38,869 | INFO     | sum of square deviations: 57407588.0
[2025-10-13 18:40:12] 2025-10-13 16:39:38,869 | INFO     | sum of deviations: -1647135847.0000002
[2025-10-13 18:40:12] 2025-10-13 16:39:38,869 | INFO     | mean x: 1760371733.0
[2025-10-13 18:40:12] 2025-10-13 16:39:38,869 | INFO     | mean y: 2553045.964912281
[2025-10-13 18:40:12] 2025-10-13 16:39:38,869 | INFO     | -- intersect: 50511056999.65503
[2025-10-13 18:40:12] 2025-10-13 16:39:38,869 | INFO     | intersect: 50511056999.65503
[2025-10-13 18:40:12] 2025-10-13 16:39:38,869 | INFO     | chi2: 0.009256663215934241
[2025-10-13 18:40:12] 2025-10-13 16:39:38,870 | INFO     | -- intersect: 50511056999.65503
[2025-10-13 18:40:12] 2025-10-13 16:39:38,870 | INFO     | current memory leak: -28.69 B/s (using 57 data points, chi2=0.01)
[2025-10-13 18:40:12] 2025-10-13 16:39:38,870 | INFO     | could have reported an average CPU frequency of 2384 MHz (6 samples)
[2025-10-13 18:40:12] 2025-10-13 16:39:38,870 | INFO     | ..............................
[2025-10-13 18:40:12] 2025-10-13 16:39:38,870 | INFO     | . Timing measurements:
[2025-10-13 18:40:12] 2025-10-13 16:39:38,870 | INFO     | . get job = 0 s
[2025-10-13 18:40:12] 2025-10-13 16:39:38,870 | INFO     | . initial setup = 1 s
[2025-10-13 18:40:12] 2025-10-13 16:39:38,870 | INFO     | . payload setup = 5 s
[2025-10-13 18:40:12] 2025-10-13 16:39:38,870 | INFO     | . stage-in = 0 s
[2025-10-13 18:40:12] 2025-10-13 16:39:38,870 | INFO     | . payload execution = 3848 s
[2025-10-13 18:40:12] 2025-10-13 16:39:38,870 | INFO     | . stage-out = 0 s
[2025-10-13 18:40:12] 2025-10-13 16:39:38,870 | INFO     | . log creation = 0 s
[2025-10-13 18:40:12] 2025-10-13 16:39:38,870 | INFO     | ..............................
[2025-10-13 18:40:12] 2025-10-13 16:39:38,933 | INFO     | 
[2025-10-13 18:40:12] 2025-10-13 16:39:38,933 | INFO     | job summary report
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | --------------------------------------------------
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | PanDA job id: 6842182994
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | task id: 46676269
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | errors: (none)
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | pilot state: finished 
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | transexitcode: 0
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | exeerrorcode: 0
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | exeerrordiag: 
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | exitcode: 0
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | exitmsg: OK
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | cpuconsumptiontime: 28296 s
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | nevents: 400
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | neventsw: 0
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | pid: 2010953
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | pgrp: 2010953
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | corecount: 8
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | event service: False
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | sizes: {0: 2348764, 5: 2349026, 11: 2349082, 3858: 2375037, 3860: 2384051, 3864: 2384107, 3869: 2384429}
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | --------------------------------------------------
[2025-10-13 18:40:12] 2025-10-13 16:39:38,934 | INFO     | 
[2025-10-13 18:40:12] 2025-10-13 16:39:38,935 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/56
[2025-10-13 18:40:12] 2025-10-13 16:39:38,955 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,955 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,955 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,955 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,955 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | job 6842182994 has completed (purged errors)
[2025-10-13 18:40:12] 2025-10-13 16:39:38,956 | INFO     | overall cleanup function is called
[2025-10-13 18:40:12] 2025-10-13 16:39:39,961 | INFO     | --- collectZombieJob: --- 10, [2010953]
[2025-10-13 18:40:12] 2025-10-13 16:39:39,961 | INFO     | zombie collector waiting for pid 2010953
[2025-10-13 18:40:12] 2025-10-13 16:39:39,961 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:40:12] 2025-10-13 16:39:39,961 | INFO     | collected zombie processes
[2025-10-13 18:40:12] 2025-10-13 16:39:39,961 | INFO     | will attempt to kill all subprocesses of pid=2010953
[2025-10-13 18:40:12] 2025-10-13 16:39:40,210 | INFO     | process IDs to be killed: [2010953] (in reverse order)
[2025-10-13 18:40:12] 2025-10-13 16:39:40,304 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:40:12] 2025-10-13 16:39:40,304 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:40:12] 2025-10-13 16:39:40,313 | INFO     | did not find any defunct processes belonging to 2010953
[2025-10-13 18:40:12] 2025-10-13 16:39:40,321 | INFO     | did not find any defunct processes belonging to 2010953
[2025-10-13 18:40:12] 2025-10-13 16:39:40,321 | INFO     | ready for new job
[2025-10-13 18:40:12] 2025-10-13 16:39:40,322 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:40:12] 2025-10-13 16:39:40,323 | INFO     | ***************************************
[2025-10-13 18:40:12] 2025-10-13 16:39:40,323 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 18:40:12] 2025-10-13 16:39:40,323 | INFO     | ***************************************
[2025-10-13 18:40:12] 2025-10-13 16:39:40,323 | INFO     | 
[2025-10-13 18:40:12] 2025-10-13 16:39:40,330 | INFO     | architecture information:
[2025-10-13 18:40:12] 2025-10-13 16:39:40,330 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:40:12] 2025-10-13 16:39:40,346 | INFO     | cat /etc/os-release:
[2025-10-13 18:40:12] NAME="CentOS Linux"
[2025-10-13 18:40:12] VERSION="7 (Core)"
[2025-10-13 18:40:12] ID="centos"
[2025-10-13 18:40:12] ID_LIKE="rhel fedora"
[2025-10-13 18:40:12] VERSION_ID="7"
[2025-10-13 18:40:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:40:12] ANSI_COLOR="0;31"
[2025-10-13 18:40:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:40:12] HOME_URL="https://www.centos.org/"
[2025-10-13 18:40:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:40:12] 
[2025-10-13 18:40:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:40:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:40:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:40:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:40:12] 
[2025-10-13 18:40:12] 2025-10-13 16:39:40,346 | INFO     | ***************************************
[2025-10-13 18:40:12] 2025-10-13 16:39:40,849 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/56
[2025-10-13 18:40:12] 2025-10-13 16:39:40,867 | INFO     | sufficient remaining disk space (204666306560 B)
[2025-10-13 18:40:12] 2025-10-13 16:39:40,867 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:40:12] 2025-10-13 16:39:40,868 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:40:12] 2025-10-13 16:39:40,868 | INFO     | update_server=False
[2025-10-13 18:40:12] 2025-10-13 16:39:40,868 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:40:12] 2025-10-13 16:39:40,868 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:40:12] 2025-10-13 16:39:40,868 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:40:12] 2025-10-13 16:39:41,159 | INFO     | all job control threads have been joined
[2025-10-13 18:40:12] 2025-10-13 16:39:41,204 | INFO     | all payload control threads have been joined
[2025-10-13 18:40:12] 2025-10-13 16:39:41,717 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:40:12] 2025-10-13 16:39:41,717 | INFO     | aborting loop
[2025-10-13 18:40:12] 2025-10-13 16:39:41,726 | INFO     | all data control threads have been joined
[2025-10-13 18:40:12] 2025-10-13 16:39:41,873 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:41,874 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:42,001 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:42,161 | INFO     | [job] control thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:42,209 | INFO     | [payload] control thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:42,393 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:42,520 | INFO     | [job] validate thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:42,721 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:42,732 | INFO     | [data] control thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:42,793 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:42,801 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:42,873 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:42,961 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:43,009 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:44,269 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:40:12] 2025-10-13 16:39:48,273 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:39:51,252 | INFO     | job.realtimelogging is not enabled
[2025-10-13 18:40:12] 2025-10-13 16:39:52,257 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:40:12] 2025-10-13 16:40:00,239 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:40:12] 2025-10-13 16:40:01,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140211936302912)>', '<ExcThread(monitor, started 140211640047360)>']
[2025-10-13 18:40:12] 2025-10-13 16:40:06,545 | INFO     | all workflow threads have been joined
[2025-10-13 18:40:12] 2025-10-13 16:40:06,545 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:40:12] 2025-10-13 16:40:06,545 | INFO     | traces error code: 0
[2025-10-13 18:40:12] 2025-10-13 16:40:06,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:40:12] 2025-10-13 16:40:12,148 | INFO     | PID=1991321 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 18:40:12] 2025-10-13 16:40:12,148 | INFO     | .. there are 2 such processes running
[2025-10-13 18:40:12] 2025-10-13 16:40:12,148 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:40:12] 2025-10-13 16:40:12,148 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:40:12] 2025-10-13 16:40:12,148 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:40:12] 2025-10-13 16:40:12,148 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:40:12] 2025-10-13 16:40:12,148 | INFO     | [monitor] control thread has ended
[2025-10-13 18:40:12] 2025-10-13 16:40:12,229 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:40:12] 2025-10-13 16:40:12,236 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:40:12] 2025-10-13 16:40:12,238 [wrapper] pilotpid: 1991321
[2025-10-13 18:40:12] 2025-10-13 16:40:12,240 [wrapper] Pilot exit status: 0
[2025-10-13 18:40:12] 2025-10-13 16:40:12,250 [wrapper] pandaids: 6842182994
[2025-10-13 18:40:12] 2025-10-13 16:40:12,318 [wrapper] cleanup supervisor_pilot 2040239 1991322
[2025-10-13 18:40:12] 2025-10-13 16:40:12,321 [wrapper] Test setup, not cleaning
[2025-10-13 18:40:12] 2025-10-13 16:40:12,324 [wrapper] apfmon messages muted
[2025-10-13 18:40:12] 2025-10-13 16:40:12,326 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:40:12] 2025-10-13 16:40:12,329 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:40:12]  *** Error codes and diagnostics ***
[2025-10-13 18:40:12]     "exeErrorCode": 0,
[2025-10-13 18:40:12]     "exeErrorDiag": "",
[2025-10-13 18:40:12]     "pilotErrorCode": 0,
[2025-10-13 18:40:12]     "pilotErrorDiag": "",
[2025-10-13 18:40:12]  *** Listing of results directory ***
[2025-10-13 18:40:12] insgesamt 411448
[2025-10-13 18:40:12] -rw-r--r-- 1 boinc boinc    557409 Okt 13 05:15 pilot3.tar.gz
[2025-10-13 18:40:12] -rw-r--r-- 1 boinc boinc      5112 Okt 13 05:31 queuedata.json
[2025-10-13 18:40:12] -rwx------ 1 boinc boinc     36292 Okt 13 05:31 runpilot2-wrapper.sh
[2025-10-13 18:40:12] -rw-r--r-- 1 boinc boinc       100 Okt 13 17:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:40:12] -rwxr-xr-x 1 boinc boinc      7986 Okt 13 17:34 run_atlas
[2025-10-13 18:40:12] -rw-r--r-- 1 boinc boinc       105 Okt 13 17:34 job.xml
[2025-10-13 18:40:12] -rw-r--r-- 2 boinc boinc     15120 Okt 13 17:34 start_atlas.sh
[2025-10-13 18:40:12] drwxrwx--x 2 boinc boinc      4096 Okt 13 17:34 shared
[2025-10-13 18:40:12] -rw-r--r-- 2 boinc boinc    569684 Okt 13 17:34 input.tar.gz
[2025-10-13 18:40:12] -rw-r--r-- 1 boinc boinc      6667 Okt 13 17:34 init_data.xml
[2025-10-13 18:40:12] -rw-r--r-- 2 boinc boinc 222300296 Okt 13 17:34 EVNT.46676267._003849.pool.root.1
[2025-10-13 18:40:12] -rw-r--r-- 1 boinc boinc         0 Okt 13 17:34 boinc_lockfile
[2025-10-13 18:40:12] -rw-r--r-- 1 boinc boinc      2549 Okt 13 17:34 pandaJob.out
[2025-10-13 18:40:12] -rw------- 1 boinc boinc    972783 Okt 13 17:34 agis_schedconf.cvmfs.json
[2025-10-13 18:40:12] -rw------- 1 boinc boinc   1560580 Okt 13 17:34 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:40:12] drwx------ 5 boinc boinc      4096 Okt 13 17:34 pilot3
[2025-10-13 18:40:12] -rw------- 1 boinc boinc 193331561 Okt 13 18:39 HITS.46676269._095940.pool.root.1
[2025-10-13 18:40:12] -rw-r--r-- 1 boinc boinc       529 Okt 13 18:39 boinc_task_state.xml
[2025-10-13 18:40:12] -rw------- 1 boinc boinc        95 Okt 13 18:39 pilot_heartbeat.json
[2025-10-13 18:40:12] -rw------- 1 boinc boinc      1019 Okt 13 18:39 memory_monitor_summary.json
[2025-10-13 18:40:12] -rw------- 1 boinc boinc    307530 Okt 13 18:39 log.46676269._095940.job.log.tgz.1
[2025-10-13 18:40:12] -rw------- 1 boinc boinc      7749 Okt 13 18:39 heartbeat.json
[2025-10-13 18:40:12] -rw-r--r-- 1 boinc boinc        27 Okt 13 18:40 wrapper_checkpoint.txt
[2025-10-13 18:40:12] -rw-r--r-- 1 boinc boinc      8192 Okt 13 18:40 boinc_mmap_file
[2025-10-13 18:40:12] -rw------- 1 boinc boinc       822 Okt 13 18:40 pilotlog.txt
[2025-10-13 18:40:12] -rw------- 1 boinc boinc    582986 Okt 13 18:40 log.46676269._095940.job.log.1
[2025-10-13 18:40:12] -rw------- 1 boinc boinc       357 Okt 13 18:40 output.list
[2025-10-13 18:40:12] -rw-r--r-- 1 boinc boinc       620 Okt 13 18:40 runtime_log
[2025-10-13 18:40:12] -rw------- 1 boinc boinc    911360 Okt 13 18:40 result.tar.gz
[2025-10-13 18:40:12] -rw-r--r-- 1 boinc boinc      8856 Okt 13 18:40 runtime_log.err
[2025-10-13 18:40:12] -rw------- 1 boinc boinc       664 Okt 13 18:40 NrlLDmjSOS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmUeVMDmerRXim.diag
[2025-10-13 18:40:12] -rw-r--r-- 1 boinc boinc     22004 Okt 13 18:40 stderr.txt
[2025-10-13 18:40:12] HITS file was successfully produced:
[2025-10-13 18:40:12] -rw------- 1 boinc boinc 193331561 Okt 13 18:39 shared/HITS.pool.root.1
[2025-10-13 18:40:12]  *** Contents of shared directory: ***
[2025-10-13 18:40:12] insgesamt 407372
[2025-10-13 18:40:12] -rw-r--r-- 2 boinc boinc     15120 Okt 13 17:34 start_atlas.sh
[2025-10-13 18:40:12] -rw-r--r-- 2 boinc boinc    569684 Okt 13 17:34 input.tar.gz
[2025-10-13 18:40:12] -rw-r--r-- 2 boinc boinc 222300296 Okt 13 17:34 ATLAS.root_0
[2025-10-13 18:40:12] -rw------- 1 boinc boinc 193331561 Okt 13 18:39 HITS.pool.root.1
[2025-10-13 18:40:12] -rw------- 1 boinc boinc    911360 Okt 13 18:40 result.tar.gz
18:40:14 (1984788): run_atlas exited; CPU time 28423.830867
18:40:14 (1984788): called boinc_finish(0)

</stderr_txt>
]]>

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