Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:21:58 (33340): wrapper (7.7.26015): starting
22:21:58 (33340): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 22:21:58] Arguments: --nthreads 4
[2025-10-13 22:21:58] Threads: 4
[2025-10-13 22:21:58] Checking for CVMFS
[2025-10-13 22:21:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 22:21:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 22:21:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 22:21:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 22:21:59] 2.9.2.0 1822434 6116 94784 151672 1 57 22664253 36864000 0 130560 0 6315284 99.993 211559 761 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 22:21:59] CVMFS is ok
[2025-10-13 22:21:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 22:21:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 22:21:59] Further information can be found at the LHC@home message board.
[2025-10-13 22:21:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 22:21:59] Checking for apptainer binary...
[2025-10-13 22:21:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 22:21:59] Running /usr/bin/apptainer --version
[2025-10-13 22:21:59] apptainer version 1.4.1-1.1
[2025-10-13 22:21:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 22:21:59] thA315b
[2025-10-13 22:21:59] apptainer works
[2025-10-13 22:21:59] Set ATHENA_PROC_NUMBER=4
[2025-10-13 22:21:59] Set ATHENA_CORE_NUMBER=4
[2025-10-13 22:21:59] Starting ATLAS job with PandaID=6842642144
[2025-10-13 22:21:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 23:25:19]  *** The last 200 lines of the pilot log: ***
[2025-10-13 23:25:19] 2025-10-13 21:24:47,307 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 23:25:19] 2025-10-13 21:24:47,307 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 23:25:19] 2025-10-13 21:24:47,307 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 23:25:19] 2025-10-13 21:24:47,307 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 23:25:19] 2025-10-13 21:24:47,307 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 23:25:19] 2025-10-13 21:24:47,307 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 23:25:19] 2025-10-13 21:24:47,307 | INFO     | job 6842642144 has completed (purged errors)
[2025-10-13 23:25:19] 2025-10-13 21:24:47,307 | INFO     | overall cleanup function is called
[2025-10-13 23:25:19] 2025-10-13 21:24:48,313 | INFO     | --- collectZombieJob: --- 10, [43693]
[2025-10-13 23:25:19] 2025-10-13 21:24:48,314 | INFO     | zombie collector waiting for pid 43693
[2025-10-13 23:25:19] 2025-10-13 21:24:48,314 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 23:25:19] 2025-10-13 21:24:48,314 | INFO     | collected zombie processes
[2025-10-13 23:25:19] 2025-10-13 21:24:48,314 | INFO     | will attempt to kill all subprocesses of pid=43693
[2025-10-13 23:25:19] 2025-10-13 21:24:48,359 | INFO     | process IDs to be killed: [43693] (in reverse order)
[2025-10-13 23:25:19] 2025-10-13 21:24:48,386 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 23:25:19] 2025-10-13 21:24:48,386 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 23:25:19] 2025-10-13 21:24:48,388 | INFO     | did not find any defunct processes belonging to 43693
[2025-10-13 23:25:19] 2025-10-13 21:24:48,389 | INFO     | did not find any defunct processes belonging to 43693
[2025-10-13 23:25:19] 2025-10-13 21:24:48,389 | INFO     | ready for new job
[2025-10-13 23:25:19] 2025-10-13 21:24:48,389 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 23:25:19] 2025-10-13 21:24:48,390 | INFO     | ***************************************
[2025-10-13 23:25:19] 2025-10-13 21:24:48,390 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 23:25:19] 2025-10-13 21:24:48,390 | INFO     | ***************************************
[2025-10-13 23:25:19] 2025-10-13 21:24:48,390 | INFO     | 
[2025-10-13 23:25:19] 2025-10-13 21:24:48,390 | INFO     | architecture information:
[2025-10-13 23:25:19] 2025-10-13 21:24:48,390 | INFO     | executing command: cat /etc/os-release
[2025-10-13 23:25:19] 2025-10-13 21:24:48,401 | INFO     | cat /etc/os-release:
[2025-10-13 23:25:19] NAME="CentOS Linux"
[2025-10-13 23:25:19] VERSION="7 (Core)"
[2025-10-13 23:25:19] ID="centos"
[2025-10-13 23:25:19] ID_LIKE="rhel fedora"
[2025-10-13 23:25:19] VERSION_ID="7"
[2025-10-13 23:25:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 23:25:19] ANSI_COLOR="0;31"
[2025-10-13 23:25:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 23:25:19] HOME_URL="https://www.centos.org/"
[2025-10-13 23:25:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 23:25:19] 
[2025-10-13 23:25:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 23:25:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 23:25:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 23:25:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 23:25:19] 
[2025-10-13 23:25:19] 2025-10-13 21:24:48,401 | INFO     | ***************************************
[2025-10-13 23:25:19] 2025-10-13 21:24:48,901 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 23:25:19] 2025-10-13 21:24:48,915 | INFO     | sufficient remaining disk space (339078021120 B)
[2025-10-13 23:25:19] 2025-10-13 21:24:48,915 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 23:25:19] 2025-10-13 21:24:48,915 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 23:25:19] 2025-10-13 21:24:48,915 | INFO     | update_server=False
[2025-10-13 23:25:19] 2025-10-13 21:24:48,915 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 23:25:19] 2025-10-13 21:24:48,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 23:25:19] 2025-10-13 21:24:48,978 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 23:25:19] 2025-10-13 21:24:49,050 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 23:25:19] 2025-10-13 21:24:49,564 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 23:25:19] 2025-10-13 21:24:49,564 | INFO     | aborting loop
[2025-10-13 23:25:19] 2025-10-13 21:24:49,565 | INFO     | all job control threads have been joined
[2025-10-13 23:25:19] 2025-10-13 21:24:49,754 | INFO     | all data control threads have been joined
[2025-10-13 23:25:19] 2025-10-13 21:24:49,921 | INFO     | [job] retrieve thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:49,921 | INFO     | [job] queue monitor thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:50,127 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:50,226 | INFO     | [payload] validate_post thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:50,286 | INFO     | all payload control threads have been joined
[2025-10-13 23:25:19] 2025-10-13 21:24:50,568 | INFO     | [job] job monitor thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:50,571 | INFO     | [job] control thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:50,595 | INFO     | [data] copytool_in thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:50,605 | INFO     | [payload] failed_post thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:50,727 | INFO     | [job] validate thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:50,760 | INFO     | [data] control thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:50,797 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:50,797 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:50,984 | INFO     | [data] copytool_out thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:51,098 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:51,292 | INFO     | [payload] control thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:24:53,057 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 23:25:19] 2025-10-13 21:25:10,117 | INFO     | [monitor] cgroup control has ended
[2025-10-13 23:25:19] 2025-10-13 21:25:11,950 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140601003857728)>', '<ExcThread(monitor, started 140600384943872)>']
[2025-10-13 23:25:19] 2025-10-13 21:25:16,976 | INFO     | all workflow threads have been joined
[2025-10-13 23:25:19] 2025-10-13 21:25:16,976 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 23:25:19] 2025-10-13 21:25:16,976 | INFO     | traces error code: 0
[2025-10-13 23:25:19] 2025-10-13 21:25:16,977 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 23:25:19] 2025-10-13 21:25:19,695 | INFO     | PID=37135 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 23:25:19] 2025-10-13 21:25:19,695 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 23:25:19] 2025-10-13 21:25:19,695 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 23:25:19] 2025-10-13 21:25:19,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 23:25:19] 2025-10-13 21:25:19,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 23:25:19] 2025-10-13 21:25:19,696 | INFO     | [monitor] control thread has ended
[2025-10-13 23:25:19] 2025-10-13 21:25:19,747 [wrapper] ==== pilot stdout END ====
[2025-10-13 23:25:19] 2025-10-13 21:25:19,750 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 23:25:19] 2025-10-13 21:25:19,752 [wrapper] pilotpid: 37135
[2025-10-13 23:25:19] 2025-10-13 21:25:19,755 [wrapper] Pilot exit status: 0
[2025-10-13 23:25:19] 2025-10-13 21:25:19,763 [wrapper] pandaids: 6842642144
[2025-10-13 23:25:19] 2025-10-13 21:25:19,780 [wrapper] cleanup supervisor_pilot   53856 37136
[2025-10-13 23:25:19] 2025-10-13 21:25:19,783 [wrapper] Test setup, not cleaning
[2025-10-13 23:25:19] 2025-10-13 21:25:19,786 [wrapper] apfmon messages muted
[2025-10-13 23:25:19] 2025-10-13 21:25:19,788 [wrapper] ==== wrapper stdout END ====
[2025-10-13 23:25:19] 2025-10-13 21:25:19,791 [wrapper] ==== wrapper stderr END ====
[2025-10-13 23:25:19]  *** Error codes and diagnostics ***
[2025-10-13 23:25:19]     "exeErrorCode": 0,
[2025-10-13 23:25:19]     "exeErrorDiag": "",
[2025-10-13 23:25:19]     "pilotErrorCode": 0,
[2025-10-13 23:25:19]     "pilotErrorDiag": "",
[2025-10-13 23:25:19]  *** Listing of results directory ***
[2025-10-13 23:25:19] total 416760
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc    557409 Oct 13 08:04 pilot3.tar.gz
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc      5112 Oct 13 08:28 queuedata.json
[2025-10-13 23:25:19] -rwx------ 1 boinc boinc     36292 Oct 13 08:29 runpilot2-wrapper.sh
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc       100 Oct 13 22:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 23:25:19] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 22:21 run_atlas
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc       105 Oct 13 22:21 job.xml
[2025-10-13 23:25:19] -rw-r--r-- 2 boinc boinc 223149630 Oct 13 22:21 EVNT.46676267._004787.pool.root.1
[2025-10-13 23:25:19] drwxrwx--x 2 boinc boinc      4096 Oct 13 22:21 shared
[2025-10-13 23:25:19] -rw-r--r-- 2 boinc boinc    569685 Oct 13 22:21 input.tar.gz
[2025-10-13 23:25:19] -rw-r--r-- 2 boinc boinc     15120 Oct 13 22:21 start_atlas.sh
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc         0 Oct 13 22:21 boinc_setup_complete
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc      6443 Oct 13 22:21 init_data.xml
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc         0 Oct 13 22:21 boinc_lockfile
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc      2549 Oct 13 22:21 pandaJob.out
[2025-10-13 23:25:19] -rw------- 1 boinc boinc    972799 Oct 13 22:22 agis_schedconf.cvmfs.json
[2025-10-13 23:25:19] -rw------- 1 boinc boinc   1560580 Oct 13 22:22 agis_ddmendpoints.agis.ALL.json
[2025-10-13 23:25:19] drwx------ 5 boinc boinc      4096 Oct 13 22:22 pilot3
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc       529 Oct 13 23:24 boinc_task_state.xml
[2025-10-13 23:25:19] -rw------- 1 boinc boinc 198104812 Oct 13 23:24 HITS.46676269._096402.pool.root.1
[2025-10-13 23:25:19] -rw------- 1 boinc boinc        95 Oct 13 23:24 pilot_heartbeat.json
[2025-10-13 23:25:19] -rw------- 1 boinc boinc      1015 Oct 13 23:24 memory_monitor_summary.json
[2025-10-13 23:25:19] -rw------- 1 boinc boinc    246494 Oct 13 23:24 log.46676269._096402.job.log.tgz.1
[2025-10-13 23:25:19] -rw------- 1 boinc boinc      7747 Oct 13 23:24 heartbeat.json
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc      8192 Oct 13 23:25 boinc_mmap_file
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc        27 Oct 13 23:25 wrapper_checkpoint.txt
[2025-10-13 23:25:19] -rw------- 1 boinc boinc       745 Oct 13 23:25 pilotlog.txt
[2025-10-13 23:25:19] -rw------- 1 boinc boinc    564686 Oct 13 23:25 log.46676269._096402.job.log.1
[2025-10-13 23:25:19] -rw------- 1 boinc boinc       357 Oct 13 23:25 output.list
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc       620 Oct 13 23:25 runtime_log
[2025-10-13 23:25:19] -rw------- 1 boinc boinc    829440 Oct 13 23:25 result.tar.gz
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc      8782 Oct 13 23:25 runtime_log.err
[2025-10-13 23:25:19] -rw------- 1 boinc boinc       659 Oct 13 23:25 CLsKDm9ERS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm6hVMDmrx7u8m.diag
[2025-10-13 23:25:19] -rw-r--r-- 1 boinc boinc     11398 Oct 13 23:25 stderr.txt
[2025-10-13 23:25:19] HITS file was successfully produced:
[2025-10-13 23:25:19] -rw------- 1 boinc boinc 198104812 Oct 13 23:24 shared/HITS.pool.root.1
[2025-10-13 23:25:19]  *** Contents of shared directory: ***
[2025-10-13 23:25:19] total 412780
[2025-10-13 23:25:19] -rw-r--r-- 2 boinc boinc 223149630 Oct 13 22:21 ATLAS.root_0
[2025-10-13 23:25:19] -rw-r--r-- 2 boinc boinc    569685 Oct 13 22:21 input.tar.gz
[2025-10-13 23:25:19] -rw-r--r-- 2 boinc boinc     15120 Oct 13 22:21 start_atlas.sh
[2025-10-13 23:25:19] -rw------- 1 boinc boinc 198104812 Oct 13 23:24 HITS.pool.root.1
[2025-10-13 23:25:19] -rw------- 1 boinc boinc    829440 Oct 13 23:25 result.tar.gz
23:25:21 (33340): run_atlas exited; CPU time 13999.021181
23:25:21 (33340): called boinc_finish(0)

</stderr_txt>
]]>

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