Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:07:08 (2950263): wrapper (7.7.26015): starting
21:07:08 (2950263): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 21:07:08] Arguments: --nthreads 2
[2025-10-13 21:07:08] Threads: 2
[2025-10-13 21:07:08] Checking for CVMFS
[2025-10-13 21:07:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 21:07:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 21:07:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 21:07:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 21:07:08] 2.9.2.0 1499568 6168 62568 151670 0 57 30470322 36864000 0 130560 0 3727334 99.988 210013 848 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 21:07:08] CVMFS is ok
[2025-10-13 21:07:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 21:07:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 21:07:08] Further information can be found at the LHC@home message board.
[2025-10-13 21:07:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 21:07:08] Checking for apptainer binary...
[2025-10-13 21:07:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 21:07:08] Running /usr/bin/apptainer --version
[2025-10-13 21:07:08] apptainer version 1.4.1-1.1
[2025-10-13 21:07:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 21:07:08] thA389
[2025-10-13 21:07:08] apptainer works
[2025-10-13 21:07:08] Set ATHENA_PROC_NUMBER=2
[2025-10-13 21:07:08] Set ATHENA_CORE_NUMBER=2
[2025-10-13 21:07:08] Starting ATLAS job with PandaID=6842666597
[2025-10-13 21:07:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 23:11:52]  *** The last 200 lines of the pilot log: ***
[2025-10-13 23:11:52] 2025-10-13 21:11:21,778 | INFO     | cat /etc/os-release:
[2025-10-13 23:11:52] NAME="CentOS Linux"
[2025-10-13 23:11:52] VERSION="7 (Core)"
[2025-10-13 23:11:52] ID="centos"
[2025-10-13 23:11:52] ID_LIKE="rhel fedora"
[2025-10-13 23:11:52] VERSION_ID="7"
[2025-10-13 23:11:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 23:11:52] ANSI_COLOR="0;31"
[2025-10-13 23:11:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 23:11:52] HOME_URL="https://www.centos.org/"
[2025-10-13 23:11:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 23:11:52] 
[2025-10-13 23:11:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 23:11:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 23:11:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 23:11:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 23:11:52] 
[2025-10-13 23:11:52] 2025-10-13 21:11:21,778 | INFO     | ***************************************
[2025-10-13 23:11:52] 2025-10-13 21:11:22,282 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 23:11:52] 2025-10-13 21:11:22,293 | INFO     | sufficient remaining disk space (832703561728 B)
[2025-10-13 23:11:52] 2025-10-13 21:11:22,293 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 23:11:52] 2025-10-13 21:11:22,293 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 23:11:52] 2025-10-13 21:11:22,293 | INFO     | update_server=False
[2025-10-13 23:11:52] 2025-10-13 21:11:22,293 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 23:11:52] 2025-10-13 21:11:22,293 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 23:11:52] 2025-10-13 21:11:22,294 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 23:11:52] 2025-10-13 21:11:22,382 | INFO     | all job control threads have been joined
[2025-10-13 23:11:52] 2025-10-13 21:11:22,777 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 23:11:52] 2025-10-13 21:11:22,778 | INFO     | aborting loop
[2025-10-13 23:11:52] 2025-10-13 21:11:23,254 | INFO     | all data control threads have been joined
[2025-10-13 23:11:52] 2025-10-13 21:11:23,298 | INFO     | [job] queue monitor thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:23,299 | INFO     | [job] retrieve thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:23,388 | INFO     | [job] control thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:23,466 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:23,472 | INFO     | all payload control threads have been joined
[2025-10-13 23:11:52] 2025-10-13 21:11:23,539 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:23,783 | INFO     | [job] job monitor thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:23,960 | INFO     | [payload] failed_post thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:24,185 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 23:11:52] 2025-10-13 21:11:24,193 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:24,260 | INFO     | [data] control thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:24,300 | INFO     | [data] copytool_out thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:24,478 | INFO     | [payload] control thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:24,479 | INFO     | [payload] validate_post thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:24,673 | INFO     | [data] copytool_in thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:24,759 | INFO     | [job] validate thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:24,791 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:28,187 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 23:11:52] 2025-10-13 21:11:31,998 | INFO     | [monitor] cgroup control has ended
[2025-10-13 23:11:52] 2025-10-13 21:11:32,101 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140241996519232)>', '<ExcThread(monitor, started 140241268627200)>']
[2025-10-13 23:11:52] 2025-10-13 21:11:37,127 | INFO     | all workflow threads have been joined
[2025-10-13 23:11:52] 2025-10-13 21:11:37,128 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 23:11:52] 2025-10-13 21:11:37,129 | INFO     | traces error code: 0
[2025-10-13 23:11:52] 2025-10-13 21:11:37,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 23:11:52] 2025-10-13 21:11:52,328 | INFO     | PID=2953969 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 23:11:52] 2025-10-13 21:11:52,328 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 23:11:52] 2025-10-13 21:11:52,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 23:11:52] 2025-10-13 21:11:52,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 23:11:52] 2025-10-13 21:11:52,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 23:11:52] 2025-10-13 21:11:52,328 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 23:11:52] 2025-10-13 21:11:52,328 | INFO     | [monitor] control thread has ended
[2025-10-13 23:11:52] 2025-10-13 21:11:52,368 [wrapper] ==== pilot stdout END ====
[2025-10-13 23:11:52] 2025-10-13 21:11:52,370 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 23:11:52] 2025-10-13 21:11:52,373 [wrapper] pilotpid: 2953969
[2025-10-13 23:11:52] 2025-10-13 21:11:52,375 [wrapper] Pilot exit status: 0
[2025-10-13 23:11:52] 2025-10-13 21:11:52,381 [wrapper] pandaids: 6842666597
[2025-10-13 23:11:52] 2025-10-13 21:11:52,391 [wrapper] cleanup supervisor_pilot 2975471 2953970
[2025-10-13 23:11:52] 2025-10-13 21:11:52,393 [wrapper] Test setup, not cleaning
[2025-10-13 23:11:52] 2025-10-13 21:11:52,395 [wrapper] apfmon messages muted
[2025-10-13 23:11:52] 2025-10-13 21:11:52,397 [wrapper] ==== wrapper stdout END ====
[2025-10-13 23:11:52] 2025-10-13 21:11:52,398 [wrapper] ==== wrapper stderr END ====
[2025-10-13 23:11:52]  *** Error codes and diagnostics ***
[2025-10-13 23:11:52]     "exeErrorCode": 0,
[2025-10-13 23:11:52]     "exeErrorDiag": "",
[2025-10-13 23:11:52]     "pilotErrorCode": 0,
[2025-10-13 23:11:52]     "pilotErrorDiag": "",
[2025-10-13 23:11:52]  *** Listing of results directory ***
[2025-10-13 23:11:52] total 412096
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc    557409 Oct 13 08:50 pilot3.tar.gz
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc      5112 Oct 13 08:57 queuedata.json
[2025-10-13 23:11:52] -rwx------ 1 boinc boinc     36292 Oct 13 09:02 runpilot2-wrapper.sh
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc       100 Oct 13 21:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 23:11:52] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 21:07 run_atlas
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc       105 Oct 13 21:07 job.xml
[2025-10-13 23:11:52] -rw-r--r-- 2 boinc boinc 221544344 Oct 13 21:07 EVNT.46676267._000998.pool.root.1
[2025-10-13 23:11:52] -rw-r--r-- 2 boinc boinc    569685 Oct 13 21:07 input.tar.gz
[2025-10-13 23:11:52] -rw-r--r-- 2 boinc boinc     15120 Oct 13 21:07 start_atlas.sh
[2025-10-13 23:11:52] drwxrwx--x 2 boinc boinc      4096 Oct 13 21:07 shared
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc         0 Oct 13 21:07 boinc_setup_complete
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc      6281 Oct 13 21:07 init_data.xml
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc         0 Oct 13 21:07 boinc_lockfile
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc      2547 Oct 13 21:07 pandaJob.out
[2025-10-13 23:11:52] -rw------- 1 boinc boinc    972799 Oct 13 21:07 agis_schedconf.cvmfs.json
[2025-10-13 23:11:52] -rw------- 1 boinc boinc   1560580 Oct 13 21:07 agis_ddmendpoints.agis.ALL.json
[2025-10-13 23:11:52] drwx------ 5 boinc boinc      4096 Oct 13 21:07 pilot3
[2025-10-13 23:11:52] -rw------- 1 boinc boinc 193884181 Oct 13 23:10 HITS.46676269._096435.pool.root.1
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc       529 Oct 13 23:10 boinc_task_state.xml
[2025-10-13 23:11:52] -rw------- 1 boinc boinc        95 Oct 13 23:10 pilot_heartbeat.json
[2025-10-13 23:11:52] -rw------- 1 boinc boinc      1014 Oct 13 23:11 memory_monitor_summary.json
[2025-10-13 23:11:52] -rw------- 1 boinc boinc    262718 Oct 13 23:11 log.46676269._096435.job.log.tgz.1
[2025-10-13 23:11:52] -rw------- 1 boinc boinc      7745 Oct 13 23:11 heartbeat.json
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc      8192 Oct 13 23:11 boinc_mmap_file
[2025-10-13 23:11:52] -rw------- 1 boinc boinc       817 Oct 13 23:11 pilotlog.txt
[2025-10-13 23:11:52] -rw------- 1 boinc boinc   1074296 Oct 13 23:11 log.46676269._096435.job.log.1
[2025-10-13 23:11:52] -rw------- 1 boinc boinc       357 Oct 13 23:11 output.list
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc       620 Oct 13 23:11 runtime_log
[2025-10-13 23:11:52] -rw------- 1 boinc boinc   1351680 Oct 13 23:11 result.tar.gz
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc        27 Oct 13 23:11 wrapper_checkpoint.txt
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc      8777 Oct 13 23:11 runtime_log.err
[2025-10-13 23:11:52] -rw------- 1 boinc boinc       659 Oct 13 23:11 qYGLDmTkRS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkimNDmCt5Ydm.diag
[2025-10-13 23:11:52] -rw-r--r-- 1 boinc boinc      8878 Oct 13 23:11 stderr.txt
[2025-10-13 23:11:52] HITS file was successfully produced:
[2025-10-13 23:11:52] -rw------- 1 boinc boinc 193884181 Oct 13 23:10 shared/HITS.pool.root.1
[2025-10-13 23:11:52]  *** Contents of shared directory: ***
[2025-10-13 23:11:52] total 407600
[2025-10-13 23:11:52] -rw-r--r-- 2 boinc boinc 221544344 Oct 13 21:07 ATLAS.root_0
[2025-10-13 23:11:52] -rw-r--r-- 2 boinc boinc    569685 Oct 13 21:07 input.tar.gz
[2025-10-13 23:11:52] -rw-r--r-- 2 boinc boinc     15120 Oct 13 21:07 start_atlas.sh
[2025-10-13 23:11:52] -rw------- 1 boinc boinc 193884181 Oct 13 23:10 HITS.pool.root.1
[2025-10-13 23:11:52] -rw------- 1 boinc boinc   1351680 Oct 13 23:11 result.tar.gz
23:11:54 (2950263): run_atlas exited; CPU time 14463.878540
23:11:54 (2950263): called boinc_finish(0)

</stderr_txt>
]]>

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