Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:33:33 (154972): wrapper (7.7.26015): starting
21:33:33 (154972): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 21:33:33] Arguments: --nthreads 4
[2025-10-13 21:33:33] Threads: 4
[2025-10-13 21:33:33] Checking for CVMFS
[2025-10-13 21:33:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 21:33:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 21:33:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 21:33:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 21:33:33] 2.9.2.0 3212 430 68316 151671 2 57 33935717 36864001 0 130560 0 392799 99.992 14701 906 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 21:33:33] CVMFS is ok
[2025-10-13 21:33:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 21:33:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 21:33:33] Further information can be found at the LHC@home message board.
[2025-10-13 21:33:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 21:33:33] Checking for apptainer binary...
[2025-10-13 21:33:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 21:33:33] Running /usr/bin/apptainer --version
[2025-10-13 21:33:33] apptainer version 1.4.1-1.1
[2025-10-13 21:33:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 21:33:33] magicA250
[2025-10-13 21:33:33] apptainer works
[2025-10-13 21:33:33] Set ATHENA_PROC_NUMBER=4
[2025-10-13 21:33:33] Set ATHENA_CORE_NUMBER=4
[2025-10-13 21:33:33] Starting ATLAS job with PandaID=6840970149
[2025-10-13 21:33:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 22:45:01]  *** The last 200 lines of the pilot log: ***
[2025-10-13 22:45:01] 2025-10-13 20:44:30,849 | INFO     | zombie collector waiting for pid 165328
[2025-10-13 22:45:01] 2025-10-13 20:44:30,849 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 22:45:01] 2025-10-13 20:44:30,849 | INFO     | collected zombie processes
[2025-10-13 22:45:01] 2025-10-13 20:44:30,849 | INFO     | will attempt to kill all subprocesses of pid=165328
[2025-10-13 22:45:01] 2025-10-13 20:44:30,894 | INFO     | process IDs to be killed: [165328] (in reverse order)
[2025-10-13 22:45:01] 2025-10-13 20:44:30,926 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 22:45:01] 2025-10-13 20:44:30,926 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 22:45:01] 2025-10-13 20:44:30,928 | INFO     | did not find any defunct processes belonging to 165328
[2025-10-13 22:45:01] 2025-10-13 20:44:30,929 | INFO     | did not find any defunct processes belonging to 165328
[2025-10-13 22:45:01] 2025-10-13 20:44:30,930 | INFO     | ready for new job
[2025-10-13 22:45:01] 2025-10-13 20:44:30,930 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 22:45:01] 2025-10-13 20:44:30,930 | INFO     | ***************************************
[2025-10-13 22:45:01] 2025-10-13 20:44:30,930 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 22:45:01] 2025-10-13 20:44:30,930 | INFO     | ***************************************
[2025-10-13 22:45:01] 2025-10-13 20:44:30,930 | INFO     | 
[2025-10-13 22:45:01] 2025-10-13 20:44:30,931 | INFO     | architecture information:
[2025-10-13 22:45:01] 2025-10-13 20:44:30,931 | INFO     | executing command: cat /etc/os-release
[2025-10-13 22:45:01] 2025-10-13 20:44:30,945 | INFO     | cat /etc/os-release:
[2025-10-13 22:45:01] NAME="CentOS Linux"
[2025-10-13 22:45:01] VERSION="7 (Core)"
[2025-10-13 22:45:01] ID="centos"
[2025-10-13 22:45:01] ID_LIKE="rhel fedora"
[2025-10-13 22:45:01] VERSION_ID="7"
[2025-10-13 22:45:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 22:45:01] ANSI_COLOR="0;31"
[2025-10-13 22:45:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 22:45:01] HOME_URL="https://www.centos.org/"
[2025-10-13 22:45:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 22:45:01] 
[2025-10-13 22:45:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 22:45:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 22:45:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 22:45:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 22:45:01] 
[2025-10-13 22:45:01] 2025-10-13 20:44:30,945 | INFO     | ***************************************
[2025-10-13 22:45:01] 2025-10-13 20:44:31,448 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 22:45:01] 2025-10-13 20:44:31,465 | INFO     | sufficient remaining disk space (326893568000 B)
[2025-10-13 22:45:01] 2025-10-13 20:44:31,465 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 22:45:01] 2025-10-13 20:44:31,465 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 22:45:01] 2025-10-13 20:44:31,466 | INFO     | update_server=False
[2025-10-13 22:45:01] 2025-10-13 20:44:31,466 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 22:45:01] 2025-10-13 20:44:31,466 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 22:45:01] 2025-10-13 20:44:31,466 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:45:01] 2025-10-13 20:44:31,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 22:45:01] 2025-10-13 20:44:31,592 | INFO     | all payload control threads have been joined
[2025-10-13 22:45:01] 2025-10-13 20:44:31,622 | INFO     | all data control threads have been joined
[2025-10-13 22:45:01] 2025-10-13 20:44:31,975 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:45:01] 2025-10-13 20:44:31,976 | INFO     | aborting loop
[2025-10-13 22:45:01] 2025-10-13 20:44:32,238 | INFO     | all job control threads have been joined
[2025-10-13 22:45:01] 2025-10-13 20:44:32,471 | INFO     | [job] retrieve thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:32,472 | INFO     | [job] queue monitor thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:32,598 | INFO     | [payload] control thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:32,628 | INFO     | [data] control thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:32,843 | INFO     | [payload] validate_post thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:32,903 | INFO     | [data] copytool_in thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:32,981 | INFO     | [job] job monitor thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:33,244 | INFO     | [job] control thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:33,472 | INFO     | [data] copytool_out thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:33,647 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:33,729 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:33,789 | INFO     | [job] validate thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:33,807 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:33,850 | INFO     | [payload] failed_post thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:35,502 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:41,687 | INFO     | job.realtimelogging is not enabled
[2025-10-13 22:45:01] 2025-10-13 20:44:42,693 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 22:45:01] 2025-10-13 20:44:46,371 | INFO     | [monitor] cgroup control has ended
[2025-10-13 22:45:01] 2025-10-13 20:44:46,406 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139742072338240)>', '<ExcThread(monitor, started 139741433415424)>']
[2025-10-13 22:45:01] 2025-10-13 20:44:51,432 | INFO     | all workflow threads have been joined
[2025-10-13 22:45:01] 2025-10-13 20:44:51,432 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 22:45:01] 2025-10-13 20:44:51,432 | INFO     | traces error code: 0
[2025-10-13 22:45:01] 2025-10-13 20:44:51,432 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 22:45:01] 2025-10-13 20:45:01,195 | INFO     | PID=158755 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 22:45:01] 2025-10-13 20:45:01,195 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 22:45:01] 2025-10-13 20:45:01,195 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 22:45:01] 2025-10-13 20:45:01,195 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 22:45:01] 2025-10-13 20:45:01,195 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 22:45:01] 2025-10-13 20:45:01,195 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 22:45:01] 2025-10-13 20:45:01,196 | INFO     | [monitor] control thread has ended
[2025-10-13 22:45:01] 2025-10-13 20:45:01,273 [wrapper] ==== pilot stdout END ====
[2025-10-13 22:45:01] 2025-10-13 20:45:01,277 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 22:45:01] 2025-10-13 20:45:01,280 [wrapper] pilotpid: 158755
[2025-10-13 22:45:01] 2025-10-13 20:45:01,284 [wrapper] Pilot exit status: 0
[2025-10-13 22:45:01] 2025-10-13 20:45:01,295 [wrapper] pandaids: 6840970149
[2025-10-13 22:45:01] 2025-10-13 20:45:01,317 [wrapper] cleanup supervisor_pilot  175639 158756
[2025-10-13 22:45:01] 2025-10-13 20:45:01,321 [wrapper] Test setup, not cleaning
[2025-10-13 22:45:01] 2025-10-13 20:45:01,325 [wrapper] apfmon messages muted
[2025-10-13 22:45:01] 2025-10-13 20:45:01,329 [wrapper] ==== wrapper stdout END ====
[2025-10-13 22:45:01] 2025-10-13 20:45:01,333 [wrapper] ==== wrapper stderr END ====
[2025-10-13 22:45:01]  *** Error codes and diagnostics ***
[2025-10-13 22:45:01]     "exeErrorCode": 0,
[2025-10-13 22:45:01]     "exeErrorDiag": "",
[2025-10-13 22:45:01]     "pilotErrorCode": 0,
[2025-10-13 22:45:01]     "pilotErrorDiag": "",
[2025-10-13 22:45:01]  *** Listing of results directory ***
[2025-10-13 22:45:01] total 407084
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:51 pilot3.tar.gz
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:53 queuedata.json
[2025-10-13 22:45:01] -rwx------ 1 boinc boinc     36292 Oct 13 01:55 runpilot2-wrapper.sh
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc       100 Oct 13 21:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 22:45:01] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 21:33 run_atlas
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc       105 Oct 13 21:33 job.xml
[2025-10-13 22:45:01] -rw-r--r-- 2 boinc boinc 219965991 Oct 13 21:33 EVNT.46676267._004672.pool.root.1
[2025-10-13 22:45:01] drwxrwx--x 2 boinc boinc      4096 Oct 13 21:33 shared
[2025-10-13 22:45:01] -rw-r--r-- 2 boinc boinc    569677 Oct 13 21:33 input.tar.gz
[2025-10-13 22:45:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 21:33 start_atlas.sh
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc         0 Oct 13 21:33 boinc_setup_complete
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc      6376 Oct 13 21:33 init_data.xml
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc         0 Oct 13 21:33 boinc_lockfile
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc      2548 Oct 13 21:33 pandaJob.out
[2025-10-13 22:45:01] -rw------- 1 boinc boinc    972799 Oct 13 21:33 agis_schedconf.cvmfs.json
[2025-10-13 22:45:01] -rw------- 1 boinc boinc   1560580 Oct 13 21:33 agis_ddmendpoints.agis.ALL.json
[2025-10-13 22:45:01] drwx------ 5 boinc boinc      4096 Oct 13 21:33 pilot3
[2025-10-13 22:45:01] -rw------- 1 boinc boinc        95 Oct 13 22:44 pilot_heartbeat.json
[2025-10-13 22:45:01] -rw------- 1 boinc boinc 191254204 Oct 13 22:44 HITS.46676269._092569.pool.root.1
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc       529 Oct 13 22:44 boinc_task_state.xml
[2025-10-13 22:45:01] -rw------- 1 boinc boinc      1024 Oct 13 22:44 memory_monitor_summary.json
[2025-10-13 22:45:01] -rw------- 1 boinc boinc    246118 Oct 13 22:44 log.46676269._092569.job.log.tgz.1
[2025-10-13 22:45:01] -rw------- 1 boinc boinc      7778 Oct 13 22:44 heartbeat.json
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc      8192 Oct 13 22:44 boinc_mmap_file
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc        27 Oct 13 22:45 wrapper_checkpoint.txt
[2025-10-13 22:45:01] -rw------- 1 boinc boinc       816 Oct 13 22:45 pilotlog.txt
[2025-10-13 22:45:01] -rw------- 1 boinc boinc    630710 Oct 13 22:45 log.46676269._092569.job.log.1
[2025-10-13 22:45:01] -rw------- 1 boinc boinc       357 Oct 13 22:45 output.list
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc       620 Oct 13 22:45 runtime_log
[2025-10-13 22:45:01] -rw------- 1 boinc boinc    890880 Oct 13 22:45 result.tar.gz
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc      8792 Oct 13 22:45 runtime_log.err
[2025-10-13 22:45:01] -rw------- 1 boinc boinc       661 Oct 13 22:45 0OqKDmD5KS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmiJVMDmFIWbVo.diag
[2025-10-13 22:45:01] -rw-r--r-- 1 boinc boinc     10688 Oct 13 22:45 stderr.txt
[2025-10-13 22:45:01] HITS file was successfully produced:
[2025-10-13 22:45:01] -rw------- 1 boinc boinc 191254204 Oct 13 22:44 shared/HITS.pool.root.1
[2025-10-13 22:45:01]  *** Contents of shared directory: ***
[2025-10-13 22:45:01] total 403040
[2025-10-13 22:45:01] -rw-r--r-- 2 boinc boinc 219965991 Oct 13 21:33 ATLAS.root_0
[2025-10-13 22:45:01] -rw-r--r-- 2 boinc boinc    569677 Oct 13 21:33 input.tar.gz
[2025-10-13 22:45:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 21:33 start_atlas.sh
[2025-10-13 22:45:01] -rw------- 1 boinc boinc 191254204 Oct 13 22:44 HITS.pool.root.1
[2025-10-13 22:45:01] -rw------- 1 boinc boinc    890880 Oct 13 22:45 result.tar.gz
22:45:03 (154972): run_atlas exited; CPU time 15848.613697
22:45:03 (154972): called boinc_finish(0)

</stderr_txt>
]]>

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