Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:28:55 (26566): wrapper (7.7.26015): starting
05:28:55 (26566): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 05:28:55] Arguments: --nthreads 12
[2025-10-13 05:28:55] Threads: 12
[2025-10-13 05:28:55] Checking for CVMFS
[2025-10-13 05:28:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:28:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:28:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:28:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:28:56] 2.11.2.0 3103 14118 90932 151656 3 57 11851069 20275200 1 130560 0 14773203 99.993 472851 46398 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 05:28:56] CVMFS is ok
[2025-10-13 05:28:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:28:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:28:56] Further information can be found at the LHC@home message board.
[2025-10-13 05:28:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:28:56] Checking for apptainer binary...
[2025-10-13 05:28:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:28:56] Running /usr/bin/apptainer --version
[2025-10-13 05:28:56] apptainer version 1.3.2-1.el7
[2025-10-13 05:28:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:28:57] c-115-41.aglt2.org
[2025-10-13 05:28:57] apptainer works
[2025-10-13 05:28:57] Set ATHENA_PROC_NUMBER=12
[2025-10-13 05:28:57] Set ATHENA_CORE_NUMBER=12
[2025-10-13 05:28:57] Starting ATLAS job with PandaID=6840970262
[2025-10-13 05:28:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:35:29]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:35:29]  protocol_id=None
[2025-10-13 06:35:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 06:35:29]  replicas=None
[2025-10-13 06:35:29]  scope=mc23_13p6TeV
[2025-10-13 06:35:29]  status=None
[2025-10-13 06:35:29]  status_code=0
[2025-10-13 06:35:29]  storage_token=
[2025-10-13 06:35:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840970262/log.46676269._092682.job.log.tgz.1
[2025-10-13 06:35:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b9/52/log.46676269._092682.job.log.tgz.1
[2025-10-13 06:35:29]  workdir=None
[2025-10-13 06:35:29] ]
[2025-10-13 06:35:29] 2025-10-13 10:34:51,636 | INFO     | transferring file log.46676269._092682.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840970262/log.46676269._092682.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 06:35:29] 2025-10-13 10:34:51,636 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840970262/log.46676269._092682.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._092682.job
[2025-10-13 06:35:29] 2025-10-13 10:34:51,659 | INFO     | adding to output.list: log.46676269._092682.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b9/52/log.46676269._092682.job.log.tg
[2025-10-13 06:35:29] 2025-10-13 10:34:51,660 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 06:35:29] 2025-10-13 10:34:51,660 | INFO     | summary of transferred files:
[2025-10-13 06:35:29] 2025-10-13 10:34:51,660 | INFO     |  -- lfn=log.46676269._092682.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 06:35:29] 2025-10-13 10:34:51,660 | INFO     | stage-out finished correctly
[2025-10-13 06:35:29] 2025-10-13 10:34:51,738 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 06:35:29] 2025-10-13 10:34:51,753 | INFO     | time since job start (3940s) is within the limit (172800.0s)
[2025-10-13 06:35:29] 2025-10-13 10:34:52,615 | INFO     | job 6840970262 has state=finished
[2025-10-13 06:35:29] 2025-10-13 10:34:52,616 | INFO     | preparing for final server update for job 6840970262 in state='finished'
[2025-10-13 06:35:29] 2025-10-13 10:34:52,616 | INFO     | this job has now completed (state=finished)
[2025-10-13 06:35:29] 2025-10-13 10:34:52,616 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 06:35:29] 2025-10-13 10:34:52,616 | INFO     | log transfer has been attempted: DONE
[2025-10-13 06:35:29] 2025-10-13 10:34:52,617 | INFO     | job 6840970262 has finished - writing final server update
[2025-10-13 06:35:29] 2025-10-13 10:34:52,617 | INFO     | total number of processed events: 400 (read)
[2025-10-13 06:35:29] 2025-10-13 10:34:52,618 | INFO     | executing command: lscpu
[2025-10-13 06:35:29] 2025-10-13 10:34:52,642 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 06:35:29] 2025-10-13 10:34:52,904 | INFO     | monitor loop #296: job 0:6840970262 is in state 'finished'
[2025-10-13 06:35:29] 2025-10-13 10:34:52,904 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:35:29] 2025-10-13 10:34:53,763 | INFO     | time since job start (3942s) is within the limit (172800.0s)
[2025-10-13 06:35:29] 2025-10-13 10:34:55,407 | INFO     | monitor loop #297: job 0:6840970262 is in state 'finished'
[2025-10-13 06:35:29] 2025-10-13 10:34:55,407 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:35:29] 2025-10-13 10:34:55,768 | INFO     | time since job start (3944s) is within the limit (172800.0s)
[2025-10-13 06:35:29] 2025-10-13 10:34:56,881 | INFO     | PID=30280 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 06:35:29] 2025-10-13 10:34:57,192 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 06:35:29] 2025-10-13 10:34:57,196 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1751.25
[2025-10-13 06:35:29] 2025-10-13 10:34:57,199 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840970262/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:35:29] 2025-10-13 10:34:57,199 | INFO     | extracted standard info from prmon json
[2025-10-13 06:35:29] 2025-10-13 10:34:57,199 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 06:35:29] 2025-10-13 10:34:57,199 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 06:35:29] 2025-10-13 10:34:57,200 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:35:29] 2025-10-13 10:34:57,200 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:35:29] 2025-10-13 10:34:57,201 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:35:29] 2025-10-13 10:34:57,201 | INFO     | sum of square deviations: 60482994.5
[2025-10-13 06:35:29] 2025-10-13 10:34:57,201 | INFO     | sum of deviations: -6552355809.0
[2025-10-13 06:35:29] 2025-10-13 10:34:57,202 | INFO     | mean x: 1760349823.5
[2025-10-13 06:35:29] 2025-10-13 10:34:57,202 | INFO     | mean y: 2863750.0689655175
[2025-10-13 06:35:29] 2025-10-13 10:34:57,202 | INFO     | -- intersect: 190708341996.22873
[2025-10-13 06:35:29] 2025-10-13 10:34:57,202 | INFO     | intersect: 190708341996.22873
[2025-10-13 06:35:29] 2025-10-13 10:34:57,202 | INFO     | chi2: 0.04468917736783651
[2025-10-13 06:35:29] 2025-10-13 10:34:57,202 | INFO     | -- intersect: 190708341996.22873
[2025-10-13 06:35:29] 2025-10-13 10:34:57,202 | INFO     | current memory leak: -108.33 B/s (using 58 data points, chi2=0.04)
[2025-10-13 06:35:29] 2025-10-13 10:34:57,203 | INFO     | could have reported an average CPU frequency of 2150 MHz (6 samples)
[2025-10-13 06:35:29] 2025-10-13 10:34:57,203 | INFO     | ..............................
[2025-10-13 06:35:29] 2025-10-13 10:34:57,203 | INFO     | . Timing measurements:
[2025-10-13 06:35:29] 2025-10-13 10:34:57,203 | INFO     | . get job = 0 s
[2025-10-13 06:35:29] 2025-10-13 10:34:57,203 | INFO     | . initial setup = 2 s
[2025-10-13 06:35:29] 2025-10-13 10:34:57,203 | INFO     | . payload setup = 6 s
[2025-10-13 06:35:29] 2025-10-13 10:34:57,203 | INFO     | . stage-in = 0 s
[2025-10-13 06:35:29] 2025-10-13 10:34:57,203 | INFO     | . payload execution = 3912 s
[2025-10-13 06:35:29] 2025-10-13 10:34:57,203 | INFO     | . stage-out = 0 s
[2025-10-13 06:35:29] 2025-10-13 10:34:57,203 | INFO     | . log creation = 0 s
[2025-10-13 06:35:29] 2025-10-13 10:34:57,204 | INFO     | ..............................
[2025-10-13 06:35:29] 2025-10-13 10:34:57,279 | INFO     | 
[2025-10-13 06:35:29] 2025-10-13 10:34:57,279 | INFO     | job summary report
[2025-10-13 06:35:29] 2025-10-13 10:34:57,279 | INFO     | --------------------------------------------------
[2025-10-13 06:35:29] 2025-10-13 10:34:57,279 | INFO     | PanDA job id: 6840970262
[2025-10-13 06:35:29] 2025-10-13 10:34:57,279 | INFO     | task id: 46676269
[2025-10-13 06:35:29] 2025-10-13 10:34:57,279 | INFO     | errors: (none)
[2025-10-13 06:35:29] 2025-10-13 10:34:57,280 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:35:29] 2025-10-13 10:34:57,280 | INFO     | pilot state: finished 
[2025-10-13 06:35:29] 2025-10-13 10:34:57,280 | INFO     | transexitcode: 0
[2025-10-13 06:35:29] 2025-10-13 10:34:57,280 | INFO     | exeerrorcode: 0
[2025-10-13 06:35:29] 2025-10-13 10:34:57,280 | INFO     | exeerrordiag: 
[2025-10-13 06:35:29] 2025-10-13 10:34:57,280 | INFO     | exitcode: 0
[2025-10-13 06:35:29] 2025-10-13 10:34:57,280 | INFO     | exitmsg: OK
[2025-10-13 06:35:29] 2025-10-13 10:34:57,280 | INFO     | cpuconsumptiontime: 42565 s
[2025-10-13 06:35:29] 2025-10-13 10:34:57,280 | INFO     | nevents: 400
[2025-10-13 06:35:29] 2025-10-13 10:34:57,280 | INFO     | neventsw: 0
[2025-10-13 06:35:29] 2025-10-13 10:34:57,281 | INFO     | pid: 4380
[2025-10-13 06:35:29] 2025-10-13 10:34:57,281 | INFO     | pgrp: 4380
[2025-10-13 06:35:29] 2025-10-13 10:34:57,281 | INFO     | corecount: 12
[2025-10-13 06:35:29] 2025-10-13 10:34:57,281 | INFO     | event service: False
[2025-10-13 06:35:29] 2025-10-13 10:34:57,281 | INFO     | sizes: {0: 2348686, 1: 2348885, 5: 2349147, 11: 2349203, 3923: 2375043, 3924: 2384225, 3930: 2384363}
[2025-10-13 06:35:29] 2025-10-13 10:34:57,281 | INFO     | --------------------------------------------------
[2025-10-13 06:35:29] 2025-10-13 10:34:57,281 | INFO     | 
[2025-10-13 06:35:29] 2025-10-13 10:34:57,281 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 06:35:29] 2025-10-13 10:34:57,306 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,306 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,307 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,307 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,307 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,307 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,307 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,307 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,308 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,308 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,308 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,308 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,308 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,308 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,309 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,309 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,309 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,309 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:35:29] 2025-10-13 10:34:57,309 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,309 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:35:29] 2025-10-13 10:34:57,309 | INFO     | job 6840970262 has completed (purged errors)
[2025-10-13 06:35:29] 2025-10-13 10:34:57,310 | INFO     | overall cleanup function is called
[2025-10-13 06:35:29] 2025-10-13 10:34:58,317 | INFO     | --- collectZombieJob: --- 10, [4380]
[2025-10-13 06:35:29] 2025-10-13 10:34:58,317 | INFO     | zombie collector waiting for pid 4380
[2025-10-13 06:35:29] 2025-10-13 10:34:58,317 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:35:29] 2025-10-13 10:34:58,318 | INFO     | collected zombie processes
[2025-10-13 06:35:29] 2025-10-13 10:34:58,318 | INFO     | will attempt to kill all subprocesses of pid=4380
[2025-10-13 06:35:29] 2025-10-13 10:34:58,406 | INFO     | process IDs to be killed: [4380] (in reverse order)
[2025-10-13 06:35:29] 2025-10-13 10:34:58,459 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:35:29] 2025-10-13 10:34:58,459 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:35:29] 2025-10-13 10:34:58,463 | INFO     | did not find any defunct processes belonging to 4380
[2025-10-13 06:35:29] 2025-10-13 10:34:58,466 | INFO     | did not find any defunct processes belonging to 4380
[2025-10-13 06:35:29] 2025-10-13 10:34:58,467 | INFO     | ready for new job
[2025-10-13 06:35:29] 2025-10-13 10:34:58,467 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:35:29] 2025-10-13 10:34:58,468 | INFO     | ***************************************
[2025-10-13 06:35:29] 2025-10-13 10:34:58,469 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:35:29] 2025-10-13 10:34:58,469 | INFO     | ***************************************
[2025-10-13 06:35:29] 2025-10-13 10:34:58,469 | INFO     | 
[2025-10-13 06:35:29] 2025-10-13 10:34:58,469 | INFO     | architecture information:
[2025-10-13 06:35:29] 2025-10-13 10:34:58,470 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:35:29] 2025-10-13 10:34:58,486 | INFO     | cat /etc/os-release:
[2025-10-13 06:35:29] NAME="CentOS Linux"
[2025-10-13 06:35:29] VERSION="7 (Core)"
[2025-10-13 06:35:29] ID="centos"
[2025-10-13 06:35:29] ID_LIKE="rhel fedora"
[2025-10-13 06:35:29] VERSION_ID="7"
[2025-10-13 06:35:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:35:29] ANSI_COLOR="0;31"
[2025-10-13 06:35:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:35:29] HOME_URL="https://www.centos.org/"
[2025-10-13 06:35:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:35:29] 
[2025-10-13 06:35:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:35:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:35:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:35:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:35:29] 
[2025-10-13 06:35:29] 2025-10-13 10:34:58,487 | INFO     | ***************************************
[2025-10-13 06:35:29] 2025-10-13 10:34:58,988 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 06:35:29] 2025-10-13 10:34:59,006 | INFO     | sufficient remaining disk space (18579718144 B)
[2025-10-13 06:35:29] 2025-10-13 10:34:59,007 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:35:29] 2025-10-13 10:34:59,007 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:35:29] 2025-10-13 10:34:59,007 | INFO     | update_server=False
[2025-10-13 06:35:29] 2025-10-13 10:34:59,007 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:35:29] 2025-10-13 10:34:59,008 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:35:29] 2025-10-13 10:34:59,008 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:35:29] 2025-10-13 10:34:59,008 | INFO     | aborting loop
[2025-10-13 06:35:29] 2025-10-13 10:34:59,527 | INFO     | all data control threads have been joined
[2025-10-13 06:35:29] 2025-10-13 10:34:59,528 | INFO     | all payload control threads have been joined
[2025-10-13 06:35:29] 2025-10-13 10:34:59,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:35:29] 2025-10-13 10:35:00,012 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:00,014 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:00,014 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:00,447 | INFO     | all job control threads have been joined
[2025-10-13 06:35:29] 2025-10-13 10:35:00,531 | INFO     | [payload] control thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:00,533 | INFO     | [data] control thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:00,617 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:00,960 | INFO     | [job] validate thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:01,089 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:01,301 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:01,321 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:01,321 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:01,452 | INFO     | [job] control thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:01,461 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:01,765 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:02,322 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:35:29] 2025-10-13 10:35:06,328 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:09,251 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:35:29] 2025-10-13 10:35:10,256 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:35:29] 2025-10-13 10:35:17,600 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:35:29] 2025-10-13 10:35:19,012 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140127092414272)>', '<ExcThread(monitor, started 140125908489984)>']
[2025-10-13 06:35:29] 2025-10-13 10:35:24,037 | INFO     | all workflow threads have been joined
[2025-10-13 06:35:29] 2025-10-13 10:35:24,038 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:35:29] 2025-10-13 10:35:24,038 | INFO     | traces error code: 0
[2025-10-13 06:35:29] 2025-10-13 10:35:24,038 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:35:29] 2025-10-13 10:35:29,071 | INFO     | PID=30280 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 06:35:29] 2025-10-13 10:35:29,080 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:35:29] 2025-10-13 10:35:29,080 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:35:29] 2025-10-13 10:35:29,080 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:35:29] 2025-10-13 10:35:29,081 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:35:29] 2025-10-13 10:35:29,081 | INFO     | [monitor] control thread has ended
[2025-10-13 06:35:29] 2025-10-13 10:35:29,161 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:35:29] 2025-10-13 10:35:29,165 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:35:29] 2025-10-13 10:35:29,169 [wrapper] pilotpid: 30280
[2025-10-13 06:35:29] 2025-10-13 10:35:29,173 [wrapper] Pilot exit status: 0
[2025-10-13 06:35:29] 2025-10-13 10:35:29,189 [wrapper] pandaids: 6840970262
[2025-10-13 06:35:29] 2025-10-13 10:35:29,227 [wrapper] cleanup supervisor_pilot   522 30281
[2025-10-13 06:35:29] 2025-10-13 10:35:29,231 [wrapper] Test setup, not cleaning
[2025-10-13 06:35:29] 2025-10-13 10:35:29,235 [wrapper] apfmon messages muted
[2025-10-13 06:35:29] 2025-10-13 10:35:29,238 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:35:29] 2025-10-13 10:35:29,243 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:35:29]  *** Error codes and diagnostics ***
[2025-10-13 06:35:29]     "exeErrorCode": 0,
[2025-10-13 06:35:29]     "exeErrorDiag": "",
[2025-10-13 06:35:29]     "pilotErrorCode": 0,
[2025-10-13 06:35:29]     "pilotErrorDiag": "",
[2025-10-13 06:35:29]  *** Listing of results directory ***
[2025-10-13 06:35:29] total 415304
[2025-10-13 06:35:29] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 19:51 pilot3.tar.gz
[2025-10-13 06:35:29] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 19:57 queuedata.json
[2025-10-13 06:35:29] -rwx------ 1 boincer umatlas     36292 Oct 12 19:58 runpilot2-wrapper.sh
[2025-10-13 06:35:29] -rw-r--r-- 1 boincer umatlas       100 Oct 13 05:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:35:29] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 05:28 run_atlas
[2025-10-13 06:35:29] -rw-r--r-- 1 boincer umatlas       105 Oct 13 05:28 job.xml
[2025-10-13 06:35:29] -rw-r--r-- 2 boincer umatlas 223160393 Oct 13 05:28 EVNT.46676267._004676.pool.root.1
[2025-10-13 06:35:29] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 05:28 start_atlas.sh
[2025-10-13 06:35:29] drwxrwx--x 2 boincer umatlas      4096 Oct 13 05:28 shared
[2025-10-13 06:35:29] -rw-r--r-- 2 boincer umatlas    569681 Oct 13 05:28 input.tar.gz
[2025-10-13 06:35:29] -rw-r--r-- 1 boincer umatlas         0 Oct 13 05:28 boinc_lockfile
[2025-10-13 06:35:29] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 05:28 pandaJob.out
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas    972849 Oct 13 05:29 agis_schedconf.cvmfs.json
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas   1560580 Oct 13 05:29 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:35:29] drwx------ 5 boincer umatlas      4096 Oct 13 05:29 pilot3
[2025-10-13 06:35:29] -rw-r--r-- 1 boincer umatlas      5954 Oct 13 06:28 init_data.xml
[2025-10-13 06:35:29] -rw-r--r-- 1 boincer umatlas       529 Oct 13 06:34 boinc_task_state.xml
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas 196292703 Oct 13 06:34 HITS.46676269._092682.pool.root.1
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas      1050 Oct 13 06:34 memory_monitor_summary.json
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas    380524 Oct 13 06:34 log.46676269._092682.job.log.tgz.1
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas      7856 Oct 13 06:34 heartbeat.json
[2025-10-13 06:35:29] -rw-r--r-- 1 boincer umatlas        27 Oct 13 06:35 wrapper_checkpoint.txt
[2025-10-13 06:35:29] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 06:35 boinc_mmap_file
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas       745 Oct 13 06:35 pilotlog.txt
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas        95 Oct 13 06:35 pilot_heartbeat.json
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas    581164 Oct 13 06:35 log.46676269._092682.job.log.1
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas       357 Oct 13 06:35 output.list
[2025-10-13 06:35:29] -rw-r--r-- 1 boincer umatlas       620 Oct 13 06:35 runtime_log
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas    983040 Oct 13 06:35 result.tar.gz
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas       659 Oct 13 06:35 VoONDmq8KS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmW7lNDm2lamcn.diag
[2025-10-13 06:35:29] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 06:35 runtime_log.err
[2025-10-13 06:35:29] -rw-r--r-- 1 boincer umatlas     21829 Oct 13 06:35 stderr.txt
[2025-10-13 06:35:29] HITS file was successfully produced:
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas 196292703 Oct 13 06:34 shared/HITS.pool.root.1
[2025-10-13 06:35:29]  *** Contents of shared directory: ***
[2025-10-13 06:35:29] total 411168
[2025-10-13 06:35:29] -rw-r--r-- 2 boincer umatlas 223160393 Oct 13 05:28 ATLAS.root_0
[2025-10-13 06:35:29] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 05:28 start_atlas.sh
[2025-10-13 06:35:29] -rw-r--r-- 2 boincer umatlas    569681 Oct 13 05:28 input.tar.gz
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas 196292703 Oct 13 06:34 HITS.pool.root.1
[2025-10-13 06:35:29] -rw------- 1 boincer umatlas    983040 Oct 13 06:35 result.tar.gz
06:35:31 (26566): run_atlas exited; CPU time 42567.944245
06:35:31 (26566): called boinc_finish(0)

</stderr_txt>
]]>

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