Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:24:43 (2672801): wrapper (7.7.26015): starting
05:24:43 (2672801): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 05:24:43] Arguments: --nthreads 9
[2025-10-13 05:24:43] Threads: 9
[2025-10-13 05:24:43] Checking for CVMFS
[2025-10-13 05:24:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:24:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:24:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:24:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:24:44] 2.13.2.0 3269412 36983 378720 151656 1 275 28704362 40960001 23823 16776704 0 479200200 99.849 188045014 36740 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 05:24:44] CVMFS is ok
[2025-10-13 05:24:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:24:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:24:44] Further information can be found at the LHC@home message board.
[2025-10-13 05:24:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:24:44] Checking for apptainer binary...
[2025-10-13 05:24:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:24:44] Running /usr/bin/apptainer --version
[2025-10-13 05:24:44] apptainer version 1.4.3-1.el9
[2025-10-13 05:24:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:24:44] c8-16-2.aglt2.org
[2025-10-13 05:24:44] apptainer works
[2025-10-13 05:24:44] Set ATHENA_PROC_NUMBER=9
[2025-10-13 05:24:44] Set ATHENA_CORE_NUMBER=9
[2025-10-13 05:24:44] Starting ATLAS job with PandaID=6841125928
[2025-10-13 05:24:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:13:05]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:13:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 06:13:05]  replicas=None
[2025-10-13 06:13:05]  scope=mc23_13p6TeV
[2025-10-13 06:13:05]  status=None
[2025-10-13 06:13:05]  status_code=0
[2025-10-13 06:13:05]  storage_token=
[2025-10-13 06:13:05]  surl=/tmp/boinchome/slots/12/PanDA_Pilot-6841125928/log.46676269._094701.job.log.tgz.1
[2025-10-13 06:13:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/9c/log.46676269._094701.job.log.tgz.1
[2025-10-13 06:13:05]  workdir=None
[2025-10-13 06:13:05] ]
[2025-10-13 06:13:05] 2025-10-13 10:12:07,503 | INFO     | transferring file log.46676269._094701.job.log.tgz.1 from /tmp/boinchome/slots/12/PanDA_Pilot-6841125928/log.46676269._094701.job.log.tgz.1 to /tmp/boinchome/slots
[2025-10-13 06:13:05] 2025-10-13 10:12:07,503 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/12/PanDA_Pilot-6841125928/log.46676269._094701.job.log.tgz.1 /tmp/boinchome/slots/12/log.46676269._094701.j
[2025-10-13 06:13:05] 2025-10-13 10:12:07,523 | INFO     | adding to output.list: log.46676269._094701.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/9c/log.46676269._094701.job.log.tg
[2025-10-13 06:13:05] 2025-10-13 10:12:07,524 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 06:13:05] 2025-10-13 10:12:07,524 | INFO     | summary of transferred files:
[2025-10-13 06:13:05] 2025-10-13 10:12:07,524 | INFO     |  -- lfn=log.46676269._094701.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 06:13:05] 2025-10-13 10:12:07,524 | INFO     | stage-out finished correctly
[2025-10-13 06:13:05] 2025-10-13 10:12:08,003 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 06:13:05] 2025-10-13 10:12:08,055 | INFO     | job 6841125928 has state=finished
[2025-10-13 06:13:05] 2025-10-13 10:12:08,055 | INFO     | preparing for final server update for job 6841125928 in state='finished'
[2025-10-13 06:13:05] 2025-10-13 10:12:08,056 | INFO     | this job has now completed (state=finished)
[2025-10-13 06:13:05] 2025-10-13 10:12:08,056 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 06:13:05] 2025-10-13 10:12:08,056 | INFO     | log transfer has been attempted: DONE
[2025-10-13 06:13:05] 2025-10-13 10:12:08,056 | INFO     | job 6841125928 has finished - writing final server update
[2025-10-13 06:13:05] 2025-10-13 10:12:08,056 | INFO     | total number of processed events: 400 (read)
[2025-10-13 06:13:05] 2025-10-13 10:12:08,057 | INFO     | executing command: lscpu
[2025-10-13 06:13:05] 2025-10-13 10:12:08,121 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 06:13:05] 2025-10-13 10:12:08,218 | INFO     | time since job start (2834s) is within the limit (172800.0s)
[2025-10-13 06:13:05] 2025-10-13 10:12:10,224 | INFO     | time since job start (2836s) is within the limit (172800.0s)
[2025-10-13 06:13:05] 2025-10-13 10:12:12,229 | INFO     | time since job start (2838s) is within the limit (172800.0s)
[2025-10-13 06:13:05] 2025-10-13 10:12:12,788 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 06:13:05] 2025-10-13 10:12:12,793 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3769.910101562499
[2025-10-13 06:13:05] 2025-10-13 10:12:12,807 | INFO     | using path: /tmp/boinchome/slots/12/PanDA_Pilot-6841125928/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:13:05] 2025-10-13 10:12:12,808 | INFO     | extracted standard info from prmon json
[2025-10-13 06:13:05] 2025-10-13 10:12:12,808 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 06:13:05] 2025-10-13 10:12:12,808 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 06:13:05] 2025-10-13 10:12:12,808 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:13:05] 2025-10-13 10:12:12,808 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:13:05] 2025-10-13 10:12:12,809 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:13:05] 2025-10-13 10:12:12,809 | INFO     | sum of square deviations: 18381740.0
[2025-10-13 06:13:05] 2025-10-13 10:12:12,809 | INFO     | sum of deviations: -1068469106.9999999
[2025-10-13 06:13:05] 2025-10-13 10:12:12,809 | INFO     | mean x: 1760348985.0
[2025-10-13 06:13:05] 2025-10-13 10:12:12,809 | INFO     | mean y: 2294709.5384615385
[2025-10-13 06:13:05] 2025-10-13 10:12:12,809 | INFO     | -- intersect: 102325497410.22438
[2025-10-13 06:13:05] 2025-10-13 10:12:12,809 | INFO     | intersect: 102325497410.22438
[2025-10-13 06:13:05] 2025-10-13 10:12:12,809 | INFO     | chi2: 0.004324711460134421
[2025-10-13 06:13:05] 2025-10-13 10:12:12,809 | INFO     | -- intersect: 102325497410.22438
[2025-10-13 06:13:05] 2025-10-13 10:12:12,810 | INFO     | current memory leak: -58.13 B/s (using 39 data points, chi2=0.00)
[2025-10-13 06:13:05] 2025-10-13 10:12:12,810 | INFO     | could have reported an average CPU frequency of 3761 MHz (5 samples)
[2025-10-13 06:13:05] 2025-10-13 10:12:12,810 | INFO     | ..............................
[2025-10-13 06:13:05] 2025-10-13 10:12:12,810 | INFO     | . Timing measurements:
[2025-10-13 06:13:05] 2025-10-13 10:12:12,810 | INFO     | . get job = 0 s
[2025-10-13 06:13:05] 2025-10-13 10:12:12,810 | INFO     | . initial setup = 2 s
[2025-10-13 06:13:05] 2025-10-13 10:12:12,810 | INFO     | . payload setup = 5 s
[2025-10-13 06:13:05] 2025-10-13 10:12:12,810 | INFO     | . stage-in = 0 s
[2025-10-13 06:13:05] 2025-10-13 10:12:12,810 | INFO     | . payload execution = 2806 s
[2025-10-13 06:13:05] 2025-10-13 10:12:12,810 | INFO     | . stage-out = 0 s
[2025-10-13 06:13:05] 2025-10-13 10:12:12,810 | INFO     | . log creation = 0 s
[2025-10-13 06:13:05] 2025-10-13 10:12:12,810 | INFO     | ..............................
[2025-10-13 06:13:05] 2025-10-13 10:12:12,866 | INFO     | 
[2025-10-13 06:13:05] 2025-10-13 10:12:12,867 | INFO     | job summary report
[2025-10-13 06:13:05] 2025-10-13 10:12:12,867 | INFO     | --------------------------------------------------
[2025-10-13 06:13:05] 2025-10-13 10:12:12,867 | INFO     | PanDA job id: 6841125928
[2025-10-13 06:13:05] 2025-10-13 10:12:12,867 | INFO     | task id: 46676269
[2025-10-13 06:13:05] 2025-10-13 10:12:12,867 | INFO     | errors: (none)
[2025-10-13 06:13:05] 2025-10-13 10:12:12,867 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:13:05] 2025-10-13 10:12:12,867 | INFO     | pilot state: finished 
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | transexitcode: 0
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | exeerrorcode: 0
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | exeerrordiag: 
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | exitcode: 0
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | exitmsg: OK
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | cpuconsumptiontime: 22777 s
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | nevents: 400
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | neventsw: 0
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | pid: 2691321
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | pgrp: 2691321
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | corecount: 9
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | event service: False
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | sizes: {0: 2348858, 5: 2349120, 11: 2349176, 2817: 2374671, 2818: 2383727, 2823: 2383897}
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | --------------------------------------------------
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | 
[2025-10-13 06:13:05] 2025-10-13 10:12:12,868 | INFO     | executing command: ls -lF /tmp/boinchome/slots/12
[2025-10-13 06:13:05] 2025-10-13 10:12:12,886 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,886 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,886 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | job 6841125928 has completed (purged errors)
[2025-10-13 06:13:05] 2025-10-13 10:12:12,887 | INFO     | overall cleanup function is called
[2025-10-13 06:13:05] 2025-10-13 10:12:13,824 | WARNING  | process 2691321 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 06:13:05] 2025-10-13 10:12:13,895 | INFO     | --- collectZombieJob: --- 10, [2691321]
[2025-10-13 06:13:05] 2025-10-13 10:12:13,895 | INFO     | zombie collector waiting for pid 2691321
[2025-10-13 06:13:05] 2025-10-13 10:12:13,895 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:13:05] 2025-10-13 10:12:13,895 | INFO     | collected zombie processes
[2025-10-13 06:13:05] 2025-10-13 10:12:13,896 | INFO     | will attempt to kill all subprocesses of pid=2691321
[2025-10-13 06:13:05] 2025-10-13 10:12:14,923 | INFO     | using path: /tmp/boinchome/slots/12/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:13:05] 2025-10-13 10:12:15,483 | INFO     | process IDs to be killed: [2691321] (in reverse order)
[2025-10-13 06:13:05] 2025-10-13 10:12:15,744 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:13:05] 2025-10-13 10:12:15,745 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:13:05] 2025-10-13 10:12:15,827 | INFO     | did not find any defunct processes belonging to 2691321
[2025-10-13 06:13:05] 2025-10-13 10:12:15,905 | INFO     | did not find any defunct processes belonging to 2691321
[2025-10-13 06:13:05] 2025-10-13 10:12:15,905 | INFO     | ready for new job
[2025-10-13 06:13:05] 2025-10-13 10:12:15,906 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:13:05] 2025-10-13 10:12:15,907 | INFO     | ***************************************
[2025-10-13 06:13:05] 2025-10-13 10:12:15,907 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:13:05] 2025-10-13 10:12:15,907 | INFO     | ***************************************
[2025-10-13 06:13:05] 2025-10-13 10:12:15,907 | INFO     | 
[2025-10-13 06:13:05] 2025-10-13 10:12:15,927 | INFO     | architecture information:
[2025-10-13 06:13:05] 2025-10-13 10:12:15,927 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:13:05] 2025-10-13 10:12:15,943 | INFO     | cat /etc/os-release:
[2025-10-13 06:13:05] NAME="CentOS Linux"
[2025-10-13 06:13:05] VERSION="7 (Core)"
[2025-10-13 06:13:05] ID="centos"
[2025-10-13 06:13:05] ID_LIKE="rhel fedora"
[2025-10-13 06:13:05] VERSION_ID="7"
[2025-10-13 06:13:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:13:05] ANSI_COLOR="0;31"
[2025-10-13 06:13:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:13:05] HOME_URL="https://www.centos.org/"
[2025-10-13 06:13:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:13:05] 
[2025-10-13 06:13:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:13:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:13:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:13:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:13:05] 
[2025-10-13 06:13:05] 2025-10-13 10:12:15,944 | INFO     | ***************************************
[2025-10-13 06:13:05] 2025-10-13 10:12:15,959 | INFO     | number of running child processes to parent process 2691321: 1
[2025-10-13 06:13:05] 2025-10-13 10:12:15,959 | INFO     | maximum number of monitored processes: 6
[2025-10-13 06:13:05] 2025-10-13 10:12:15,960 | INFO     | aborting job monitoring since job object (job id=6841125928) has expired
[2025-10-13 06:13:05] 2025-10-13 10:12:16,446 | INFO     | executing command: df -mP /tmp/boinchome/slots/12
[2025-10-13 06:13:05] 2025-10-13 10:12:16,464 | INFO     | sufficient remaining disk space (165719048192 B)
[2025-10-13 06:13:05] 2025-10-13 10:12:16,464 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:13:05] 2025-10-13 10:12:16,464 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:13:05] 2025-10-13 10:12:16,464 | INFO     | update_server=False
[2025-10-13 06:13:05] 2025-10-13 10:12:16,464 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:13:05] 2025-10-13 10:12:16,465 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:13:05] 2025-10-13 10:12:16,465 | INFO     | will abort loop
[2025-10-13 06:13:05] 2025-10-13 10:12:16,466 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:13:05] 2025-10-13 10:12:16,788 | INFO     | all job control threads have been joined
[2025-10-13 06:13:05] 2025-10-13 10:12:17,410 | INFO     | all data control threads have been joined
[2025-10-13 06:13:05] 2025-10-13 10:12:17,469 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:17,470 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:17,593 | INFO     | all payload control threads have been joined
[2025-10-13 06:13:05] 2025-10-13 10:12:17,698 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:17,745 | INFO     | [job] validate thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:17,790 | INFO     | [job] control thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:17,880 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:13:05] 2025-10-13 10:12:17,979 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:18,031 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:18,066 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:18,103 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:18,417 | INFO     | [data] control thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:18,471 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:18,567 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:13:05] 2025-10-13 10:12:18,598 | INFO     | [payload] control thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:18,816 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:18,885 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:22,574 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:26,629 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:13:05] 2025-10-13 10:12:27,635 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:13:05] 2025-10-13 10:12:46,072 | INFO     | PID=2676516 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 06:13:05] 2025-10-13 10:12:46,072 | INFO     | .. there are 42 such processes running
[2025-10-13 06:13:05] 2025-10-13 10:12:46,073 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:13:05] 2025-10-13 10:12:46,073 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:13:05] 2025-10-13 10:12:46,073 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:13:05] 2025-10-13 10:12:59,090 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:13:05] 2025-10-13 10:13:00,052 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140084608821056)>', '<ExcThread(monitor, started 140084328236800)>']
[2025-10-13 06:13:05] 2025-10-13 10:13:00,146 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:13:05] 2025-10-13 10:13:00,146 | INFO     | [monitor] control thread has ended
[2025-10-13 06:13:05] 2025-10-13 10:13:05,077 | INFO     | all workflow threads have been joined
[2025-10-13 06:13:05] 2025-10-13 10:13:05,077 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:13:05] 2025-10-13 10:13:05,078 | INFO     | traces error code: 0
[2025-10-13 06:13:05] 2025-10-13 10:13:05,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:13:05] 2025-10-13 10:13:05,181 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:13:05] 2025-10-13 10:13:05,184 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:13:05] 2025-10-13 10:13:05,187 [wrapper] pilotpid: 2676516
[2025-10-13 06:13:05] 2025-10-13 10:13:05,189 [wrapper] Pilot exit status: 0
[2025-10-13 06:13:05] 2025-10-13 10:13:05,198 [wrapper] pandaids: 6841125928
[2025-10-13 06:13:05] 2025-10-13 10:13:05,356 [wrapper] cleanup supervisor_pilot 3086326 2676517
[2025-10-13 06:13:05] 2025-10-13 10:13:05,358 [wrapper] Test setup, not cleaning
[2025-10-13 06:13:05] 2025-10-13 10:13:05,361 [wrapper] apfmon messages muted
[2025-10-13 06:13:05] 2025-10-13 10:13:05,363 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:13:05] 2025-10-13 10:13:05,365 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:13:05]  *** Error codes and diagnostics ***
[2025-10-13 06:13:05]     "exeErrorCode": 0,
[2025-10-13 06:13:05]     "exeErrorDiag": "",
[2025-10-13 06:13:05]     "pilotErrorCode": 0,
[2025-10-13 06:13:05]     "pilotErrorDiag": "",
[2025-10-13 06:13:05]  *** Listing of results directory ***
[2025-10-13 06:13:05] total 418532
[2025-10-13 06:13:05] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 22:00 pilot3.tar.gz
[2025-10-13 06:13:05] -rwx------. 1 boincer umatlas     36292 Oct 12 22:13 runpilot2-wrapper.sh
[2025-10-13 06:13:05] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 22:13 queuedata.json
[2025-10-13 06:13:05] -rw-r--r--. 1 boincer umatlas       100 Oct 13 05:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:13:05] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 05:24 run_atlas
[2025-10-13 06:13:05] -rw-r--r--. 1 boincer umatlas       105 Oct 13 05:24 job.xml
[2025-10-13 06:13:05] -rw-r--r--. 2 boincer umatlas 220851453 Oct 13 05:24 EVNT.46676267._004357.pool.root.1
[2025-10-13 06:13:05] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 05:24 shared
[2025-10-13 06:13:05] -rw-r--r--. 2 boincer umatlas    569677 Oct 13 05:24 input.tar.gz
[2025-10-13 06:13:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 05:24 start_atlas.sh
[2025-10-13 06:13:05] -rw-r--r--. 1 boincer umatlas         0 Oct 13 05:24 boinc_lockfile
[2025-10-13 06:13:05] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 05:24 pandaJob.out
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas    972849 Oct 13 05:24 agis_schedconf.cvmfs.json
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas   1560580 Oct 13 05:24 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:13:05] drwx------. 5 boincer umatlas      4096 Oct 13 05:24 pilot3
[2025-10-13 06:13:05] -rw-r--r--. 1 boincer umatlas      7164 Oct 13 06:09 init_data.xml
[2025-10-13 06:13:05] -rw-r--r--. 1 boincer umatlas       529 Oct 13 06:11 boinc_task_state.xml
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas 202327073 Oct 13 06:11 HITS.46676269._094701.pool.root.1
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas      1033 Oct 13 06:12 memory_monitor_summary.json
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas    318620 Oct 13 06:12 log.46676269._094701.job.log.tgz.1
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas      7774 Oct 13 06:12 heartbeat.json
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas        95 Oct 13 06:12 pilot_heartbeat.json
[2025-10-13 06:13:05] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 06:13 boinc_mmap_file
[2025-10-13 06:13:05] -rw-r--r--. 1 boincer umatlas        27 Oct 13 06:13 wrapper_checkpoint.txt
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas      5189 Oct 13 06:13 pilotlog.txt
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas    432098 Oct 13 06:13 log.46676269._094701.job.log.1
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas       357 Oct 13 06:13 output.list
[2025-10-13 06:13:05] -rw-r--r--. 1 boincer umatlas       620 Oct 13 06:13 runtime_log
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas    768000 Oct 13 06:13 result.tar.gz
[2025-10-13 06:13:05] -rw-r--r--. 1 boincer umatlas      8712 Oct 13 06:13 runtime_log.err
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas       651 Oct 13 06:13 BFIMDmKFNS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmQVVMDmDUCLrn.diag
[2025-10-13 06:13:05] -rw-r--r--. 1 boincer umatlas     21837 Oct 13 06:13 stderr.txt
[2025-10-13 06:13:05] HITS file was successfully produced:
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas 202327073 Oct 13 06:11 shared/HITS.pool.root.1
[2025-10-13 06:13:05]  *** Contents of shared directory: ***
[2025-10-13 06:13:05] total 414596
[2025-10-13 06:13:05] -rw-r--r--. 2 boincer umatlas 220851453 Oct 13 05:24 ATLAS.root_0
[2025-10-13 06:13:05] -rw-r--r--. 2 boincer umatlas    569677 Oct 13 05:24 input.tar.gz
[2025-10-13 06:13:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 05:24 start_atlas.sh
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas 202327073 Oct 13 06:11 HITS.pool.root.1
[2025-10-13 06:13:05] -rw-------. 1 boincer umatlas    768000 Oct 13 06:13 result.tar.gz
06:13:06 (2672801): run_atlas exited; CPU time 22898.111573
06:13:06 (2672801): called boinc_finish(0)

</stderr_txt>
]]>

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