Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:28:46 (3093159): wrapper (7.7.26015): starting
01:28:46 (3093159): wrapper: running run_atlas (--nthreads 6)
[2025-10-14 01:28:46] Arguments: --nthreads 6
[2025-10-14 01:28:46] Threads: 6
[2025-10-14 01:28:46] Checking for CVMFS
[2025-10-14 01:28:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 01:28:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 01:28:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 01:28:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 01:28:47] 2.11.5.0 3385007 6090 98456 151667 1 188 13722658 20971520 929 130560 0 12114833 99.996 207170 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-14 01:28:47] CVMFS is ok
[2025-10-14 01:28:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 01:28:47] Checking for apptainer binary...
[2025-10-14 01:28:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 01:28:47] Running /usr/bin/apptainer --version
[2025-10-14 01:28:47] apptainer version 1.3.6-1.el9
[2025-10-14 01:28:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 01:28:47] testio006
[2025-10-14 01:28:47] apptainer works
[2025-10-14 01:28:47] Set ATHENA_PROC_NUMBER=6
[2025-10-14 01:28:47] Set ATHENA_CORE_NUMBER=6
[2025-10-14 01:28:47] Starting ATLAS job with PandaID=6841125951
[2025-10-14 01:28:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 02:46:10]  *** The last 200 lines of the pilot log: ***
[2025-10-14 02:46:10] 2025-10-13 17:44:44,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 02:46:10] 2025-10-13 17:44:44,885 | INFO     | time since job start (4546s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:44:46,890 | INFO     | time since job start (4548s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:44:47,089 | INFO     | monitor loop #353: job 0:6841125951 is in state 'finished'
[2025-10-14 02:46:10] 2025-10-13 17:44:47,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 02:46:10] 2025-10-13 17:44:48,895 | INFO     | time since job start (4550s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:44:49,592 | INFO     | monitor loop #354: job 0:6841125951 is in state 'finished'
[2025-10-14 02:46:10] 2025-10-13 17:44:49,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 02:46:10] 2025-10-13 17:44:50,901 | INFO     | time since job start (4552s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:44:52,095 | INFO     | monitor loop #355: job 0:6841125951 is in state 'finished'
[2025-10-14 02:46:10] 2025-10-13 17:44:52,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 02:46:10] 2025-10-13 17:44:52,907 | INFO     | time since job start (4554s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:44:54,598 | INFO     | monitor loop #356: job 0:6841125951 is in state 'finished'
[2025-10-14 02:46:10] 2025-10-13 17:44:54,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 02:46:10] 2025-10-13 17:44:54,912 | INFO     | time since job start (4556s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:44:56,917 | INFO     | time since job start (4558s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:44:57,101 | INFO     | monitor loop #357: job 0:6841125951 is in state 'finished'
[2025-10-14 02:46:10] 2025-10-13 17:44:57,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 02:46:10] 2025-10-13 17:44:58,922 | INFO     | time since job start (4560s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:44:59,604 | INFO     | monitor loop #358: job 0:6841125951 is in state 'finished'
[2025-10-14 02:46:10] 2025-10-13 17:44:59,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 02:46:10] 2025-10-13 17:45:00,927 | INFO     | time since job start (4562s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:45:02,107 | INFO     | monitor loop #359: job 0:6841125951 is in state 'finished'
[2025-10-14 02:46:10] 2025-10-13 17:45:02,107 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 02:46:10] 2025-10-13 17:45:02,933 | INFO     | time since job start (4564s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:45:04,006 | INFO     | PID=3096973 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 02:46:10] 2025-10-13 17:45:04,610 | INFO     | monitor loop #360: job 0:6841125951 is in state 'finished'
[2025-10-14 02:46:10] 2025-10-13 17:45:04,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 02:46:10] 2025-10-13 17:45:05,006 | INFO     | time since job start (4567s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:45:07,012 | INFO     | time since job start (4569s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:45:07,112 | INFO     | monitor loop #361: job 0:6841125951 is in state 'finished'
[2025-10-14 02:46:10] 2025-10-13 17:45:07,113 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 02:46:10] 2025-10-13 17:45:09,017 | INFO     | time since job start (4571s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:45:09,615 | INFO     | monitor loop #362: job 0:6841125951 is in state 'finished'
[2025-10-14 02:46:10] 2025-10-13 17:45:09,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 02:46:10] 2025-10-13 17:45:11,022 | INFO     | time since job start (4573s) is within the limit (172800.0s)
[2025-10-14 02:46:10] 2025-10-13 17:45:11,565 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 02:46:10] 2025-10-13 17:45:11,567 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4090.2925625
[2025-10-14 02:46:10] 2025-10-13 17:45:11,569 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6841125951/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 02:46:10] 2025-10-13 17:45:11,569 | INFO     | extracted standard info from prmon json
[2025-10-14 02:46:10] 2025-10-13 17:45:11,569 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 02:46:10] 2025-10-13 17:45:11,569 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 02:46:10] 2025-10-13 17:45:11,569 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 02:46:10] 2025-10-13 17:45:11,569 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 02:46:10] 2025-10-13 17:45:11,570 | INFO     | fitting pss+swap vs Time
[2025-10-14 02:46:10] 2025-10-13 17:45:11,570 | INFO     | sum of square deviations: 93240818.0
[2025-10-14 02:46:10] 2025-10-13 17:45:11,570 | INFO     | sum of deviations: -4300218423.999998
[2025-10-14 02:46:10] 2025-10-13 17:45:11,570 | INFO     | mean x: 1760375277.0
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | mean y: 2582024.9104477614
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | -- intersect: 81190181637.23367
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | intersect: 81190181637.23367
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | chi2: 0.05076959314112177
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | -- intersect: 81190181637.23367
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | current memory leak: -46.12 B/s (using 67 data points, chi2=0.05)
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | could have reported an average CPU frequency of 4004 MHz (6 samples)
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | ..............................
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | . Timing measurements:
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | . get job = 0 s
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | . initial setup = 6 s
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | . payload setup = 3 s
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | . stage-in = 0 s
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | . payload execution = 4477 s
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | . stage-out = 0 s
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | . log creation = 0 s
[2025-10-14 02:46:10] 2025-10-13 17:45:11,571 | INFO     | ..............................
[2025-10-14 02:46:10] 2025-10-13 17:45:11,788 | INFO     | 
[2025-10-14 02:46:10] 2025-10-13 17:45:11,788 | INFO     | job summary report
[2025-10-14 02:46:10] 2025-10-13 17:45:11,788 | INFO     | --------------------------------------------------
[2025-10-14 02:46:10] 2025-10-13 17:45:11,788 | INFO     | PanDA job id: 6841125951
[2025-10-14 02:46:10] 2025-10-13 17:45:11,788 | INFO     | task id: 46676269
[2025-10-14 02:46:10] 2025-10-13 17:45:11,788 | INFO     | errors: (none)
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | pilot state: finished 
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | transexitcode: 0
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | exeerrorcode: 0
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | exeerrordiag: 
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | exitcode: 0
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | exitmsg: OK
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | cpuconsumptiontime: 24575 s
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | nevents: 400
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | neventsw: 0
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | pid: 3103731
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | pgrp: 3103731
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | corecount: 6
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | event service: False
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 11: 2349175, 4485: 2384370, 4487: 2384370, 4559: 2384692}
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | --------------------------------------------------
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | 
[2025-10-14 02:46:10] 2025-10-13 17:45:11,789 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-14 02:46:10] 2025-10-13 17:45:11,800 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,800 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,800 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,800 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,800 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,800 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,800 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,800 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,800 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,801 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,801 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,801 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,801 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,801 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,801 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,801 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,801 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,801 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 02:46:10] 2025-10-13 17:45:11,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,801 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 02:46:10] 2025-10-13 17:45:11,801 | INFO     | job 6841125951 has completed (purged errors)
[2025-10-14 02:46:10] 2025-10-13 17:45:11,801 | INFO     | overall cleanup function is called
[2025-10-14 02:46:10] 2025-10-13 17:45:12,807 | INFO     | --- collectZombieJob: --- 10, [3103731]
[2025-10-14 02:46:10] 2025-10-13 17:45:12,808 | INFO     | zombie collector waiting for pid 3103731
[2025-10-14 02:46:10] 2025-10-13 17:45:12,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 02:46:10] 2025-10-13 17:45:12,808 | INFO     | collected zombie processes
[2025-10-14 02:46:10] 2025-10-13 17:45:12,808 | INFO     | will attempt to kill all subprocesses of pid=3103731
[2025-10-14 02:46:10] 2025-10-13 17:45:12,863 | INFO     | process IDs to be killed: [3103731] (in reverse order)
[2025-10-14 02:46:10] 2025-10-13 17:45:12,890 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 02:46:10] 2025-10-13 17:45:12,890 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 02:46:10] 2025-10-13 17:45:12,892 | INFO     | did not find any defunct processes belonging to 3103731
[2025-10-14 02:46:10] 2025-10-13 17:45:12,893 | INFO     | did not find any defunct processes belonging to 3103731
[2025-10-14 02:46:10] 2025-10-13 17:45:12,893 | INFO     | ready for new job
[2025-10-14 02:46:10] 2025-10-13 17:45:12,893 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 02:46:10] 2025-10-13 17:45:12,894 | INFO     | ***************************************
[2025-10-14 02:46:10] 2025-10-13 17:45:12,894 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 02:46:10] 2025-10-13 17:45:12,894 | INFO     | ***************************************
[2025-10-14 02:46:10] 2025-10-13 17:45:12,894 | INFO     | 
[2025-10-14 02:46:10] 2025-10-13 17:45:12,895 | INFO     | architecture information:
[2025-10-14 02:46:10] 2025-10-13 17:45:12,895 | INFO     | executing command: cat /etc/os-release
[2025-10-14 02:46:10] 2025-10-13 17:45:12,903 | INFO     | cat /etc/os-release:
[2025-10-14 02:46:10] NAME="CentOS Linux"
[2025-10-14 02:46:10] VERSION="7 (Core)"
[2025-10-14 02:46:10] ID="centos"
[2025-10-14 02:46:10] ID_LIKE="rhel fedora"
[2025-10-14 02:46:10] VERSION_ID="7"
[2025-10-14 02:46:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 02:46:10] ANSI_COLOR="0;31"
[2025-10-14 02:46:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 02:46:10] HOME_URL="https://www.centos.org/"
[2025-10-14 02:46:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 02:46:10] 
[2025-10-14 02:46:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 02:46:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 02:46:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 02:46:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 02:46:10] 
[2025-10-14 02:46:10] 2025-10-13 17:45:12,903 | INFO     | ***************************************
[2025-10-14 02:46:10] 2025-10-13 17:45:13,406 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-14 02:46:10] 2025-10-13 17:45:13,415 | INFO     | sufficient remaining disk space (85993717760 B)
[2025-10-14 02:46:10] 2025-10-13 17:45:13,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 02:46:10] 2025-10-13 17:45:13,415 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 02:46:10] 2025-10-13 17:45:13,415 | INFO     | update_server=False
[2025-10-14 02:46:10] 2025-10-13 17:45:13,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 02:46:10] 2025-10-13 17:45:13,415 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 02:46:10] 2025-10-13 17:45:13,415 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 02:46:10] 2025-10-13 17:45:13,415 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 02:46:10] 2025-10-13 17:45:13,415 | INFO     | aborting loop
[2025-10-14 02:46:10] 2025-10-13 17:45:13,577 | INFO     | all data control threads have been joined
[2025-10-14 02:46:10] 2025-10-13 17:45:14,420 | INFO     | [job] retrieve thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:14,421 | INFO     | [job] queue monitor thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:14,421 | INFO     | [job] job monitor thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:14,456 | INFO     | all payload control threads have been joined
[2025-10-14 02:46:10] 2025-10-13 17:45:14,543 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:14,550 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:14,583 | INFO     | [data] control thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:14,641 | INFO     | [data] copytool_in thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:14,678 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:14,703 | INFO     | all job control threads have been joined
[2025-10-14 02:46:10] 2025-10-13 17:45:15,048 | INFO     | [payload] validate_post thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:15,259 | INFO     | [payload] failed_post thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:15,421 | INFO     | [data] copytool_out thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:15,462 | INFO     | [payload] control thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:15,708 | INFO     | [job] control thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:15,872 | INFO     | [job] validate thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:16,757 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 02:46:10] 2025-10-13 17:45:20,764 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:23,944 | INFO     | job.realtimelogging is not enabled
[2025-10-14 02:46:10] 2025-10-13 17:45:24,950 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 02:46:10] 2025-10-13 17:45:44,143 | INFO     | PID=3096973 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 02:46:10] 2025-10-13 17:45:44,143 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 02:46:10] 2025-10-13 17:45:44,143 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 02:46:10] 2025-10-13 17:45:44,143 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 02:46:10] 2025-10-13 17:46:04,722 | INFO     | [monitor] cgroup control has ended
[2025-10-14 02:46:10] 2025-10-13 17:46:05,314 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140566523438912)>', '<ExcThread(monitor, started 140565739984640)>']
[2025-10-14 02:46:10] 2025-10-13 17:46:06,259 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 02:46:10] 2025-10-13 17:46:06,259 | INFO     | [monitor] control thread has ended
[2025-10-14 02:46:10] 2025-10-13 17:46:10,340 | INFO     | all workflow threads have been joined
[2025-10-14 02:46:10] 2025-10-13 17:46:10,340 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 02:46:10] 2025-10-13 17:46:10,340 | INFO     | traces error code: 0
[2025-10-14 02:46:10] 2025-10-13 17:46:10,340 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 02:46:10] 2025-10-13 17:46:10,395 [wrapper] ==== pilot stdout END ====
[2025-10-14 02:46:10] 2025-10-13 17:46:10,396 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 02:46:10] 2025-10-13 17:46:10,398 [wrapper] pilotpid: 3096973
[2025-10-14 02:46:10] 2025-10-13 17:46:10,399 [wrapper] Pilot exit status: 0
[2025-10-14 02:46:10] 2025-10-13 17:46:10,404 [wrapper] pandaids: 6841125951
[2025-10-14 02:46:10] 2025-10-13 17:46:10,421 [wrapper] cleanup supervisor_pilot 3123032 3096974
[2025-10-14 02:46:10] 2025-10-13 17:46:10,422 [wrapper] Test setup, not cleaning
[2025-10-14 02:46:10] 2025-10-13 17:46:10,424 [wrapper] apfmon messages muted
[2025-10-14 02:46:10] 2025-10-13 17:46:10,425 [wrapper] ==== wrapper stdout END ====
[2025-10-14 02:46:10] 2025-10-13 17:46:10,427 [wrapper] ==== wrapper stderr END ====
[2025-10-14 02:46:10]  *** Error codes and diagnostics ***
[2025-10-14 02:46:10]     "exeErrorCode": 0,
[2025-10-14 02:46:10]     "exeErrorDiag": "",
[2025-10-14 02:46:10]     "pilotErrorCode": 0,
[2025-10-14 02:46:10]     "pilotErrorDiag": "",
[2025-10-14 02:46:10]  *** Listing of results directory ***
[2025-10-14 02:46:10] total 411952
[2025-10-14 02:46:10] -rw-r--r--. 1 boinc boinc    557409 Oct 13 11:00 pilot3.tar.gz
[2025-10-14 02:46:10] -rwx------. 1 boinc boinc     36292 Oct 13 11:13 runpilot2-wrapper.sh
[2025-10-14 02:46:10] -rw-r--r--. 1 boinc boinc      5112 Oct 13 11:13 queuedata.json
[2025-10-14 02:46:10] -rw-r--r--. 1 boinc boinc       100 Oct 14 01:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 02:46:10] -rwxr-xr-x. 1 boinc boinc      7986 Oct 14 01:28 run_atlas
[2025-10-14 02:46:10] -rw-r--r--. 1 boinc boinc       105 Oct 14 01:28 job.xml
[2025-10-14 02:46:10] -rw-r--r--. 2 boinc boinc     15120 Oct 14 01:28 start_atlas.sh
[2025-10-14 02:46:10] drwxrwx--x. 2 boinc boinc        68 Oct 14 01:28 shared
[2025-10-14 02:46:10] -rw-r--r--. 2 boinc boinc    569678 Oct 14 01:28 input.tar.gz
[2025-10-14 02:46:10] -rw-r--r--. 1 boinc boinc      9465 Oct 14 01:28 init_data.xml
[2025-10-14 02:46:10] -rw-r--r--. 2 boinc boinc 219645271 Oct 14 01:28 EVNT.46676267._004358.pool.root.1
[2025-10-14 02:46:10] -rw-r--r--. 1 boinc boinc         0 Oct 14 01:28 boinc_lockfile
[2025-10-14 02:46:10] -rw-r--r--. 1 boinc boinc      2550 Oct 14 01:28 pandaJob.out
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc    972783 Oct 14 01:28 agis_schedconf.cvmfs.json
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc   1560580 Oct 14 01:28 agis_ddmendpoints.agis.ALL.json
[2025-10-14 02:46:10] drwx------. 5 boinc boinc      4096 Oct 14 01:28 pilot3
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc 196373336 Oct 14 02:43 HITS.46676269._094724.pool.root.1
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc      1015 Oct 14 02:43 memory_monitor_summary.json
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc    292691 Oct 14 02:43 log.46676269._094724.job.log.tgz.1
[2025-10-14 02:46:10] -rw-r--r--. 1 boinc boinc       529 Oct 14 02:44 boinc_task_state.xml
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc      7754 Oct 14 02:45 heartbeat.json
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc        95 Oct 14 02:45 pilot_heartbeat.json
[2025-10-14 02:46:10] -rw-r--r--. 1 boinc boinc      8192 Oct 14 02:46 boinc_mmap_file
[2025-10-14 02:46:10] -rw-r--r--. 1 boinc boinc        27 Oct 14 02:46 wrapper_checkpoint.txt
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc      4820 Oct 14 02:46 pilotlog.txt
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc    675406 Oct 14 02:46 log.46676269._094724.job.log.1
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc       357 Oct 14 02:46 output.list
[2025-10-14 02:46:10] -rw-r--r--. 1 boinc boinc       620 Oct 14 02:46 runtime_log
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc    983040 Oct 14 02:46 result.tar.gz
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc       641 Oct 14 02:46 T9rMDmKFNS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmlVVMDm3pIzkm.diag
[2025-10-14 02:46:10] -rw-r--r--. 1 boinc boinc      8661 Oct 14 02:46 runtime_log.err
[2025-10-14 02:46:10] -rw-r--r--. 1 boinc boinc     21996 Oct 14 02:46 stderr.txt
[2025-10-14 02:46:10] HITS file was successfully produced:
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc 196373336 Oct 14 02:43 shared/HITS.pool.root.1
[2025-10-14 02:46:10]  *** Contents of shared directory: ***
[2025-10-14 02:46:10] total 407808
[2025-10-14 02:46:10] -rw-r--r--. 2 boinc boinc     15120 Oct 14 01:28 start_atlas.sh
[2025-10-14 02:46:10] -rw-r--r--. 2 boinc boinc    569678 Oct 14 01:28 input.tar.gz
[2025-10-14 02:46:10] -rw-r--r--. 2 boinc boinc 219645271 Oct 14 01:28 ATLAS.root_0
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc 196373336 Oct 14 02:43 HITS.pool.root.1
[2025-10-14 02:46:10] -rw-------. 1 boinc boinc    983040 Oct 14 02:46 result.tar.gz
02:46:12 (3093159): run_atlas exited; CPU time 24608.830449
02:46:12 (3093159): called boinc_finish(0)

</stderr_txt>
]]>

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