Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:18:25 (3367507): wrapper (7.7.26015): starting
21:18:25 (3367507): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 21:18:25] Arguments: --nthreads 3
[2025-10-13 21:18:25] Threads: 3
[2025-10-13 21:18:25] Checking for CVMFS
[2025-10-13 21:18:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 21:18:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 21:18:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 21:18:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 21:18:25] 2.9.2.0 1494257 6220 82280 151671 0 56 24303439 36864001 0 130560 0 4929737 99.991 212149 847 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 21:18:25] CVMFS is ok
[2025-10-13 21:18:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 21:18:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 21:18:25] Further information can be found at the LHC@home message board.
[2025-10-13 21:18:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 21:18:25] Checking for apptainer binary...
[2025-10-13 21:18:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 21:18:25] Running /usr/bin/apptainer --version
[2025-10-13 21:18:25] apptainer version 1.4.1-1.1
[2025-10-13 21:18:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 21:18:25] thA331a
[2025-10-13 21:18:25] apptainer works
[2025-10-13 21:18:25] Set ATHENA_PROC_NUMBER=3
[2025-10-13 21:18:25] Set ATHENA_CORE_NUMBER=3
[2025-10-13 21:18:25] Starting ATLAS job with PandaID=6841569027
[2025-10-13 21:18:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 22:39:42]  *** The last 200 lines of the pilot log: ***
[2025-10-13 22:39:42] 2025-10-13 20:38:42,163 | INFO     | update_server=False
[2025-10-13 22:39:42] 2025-10-13 20:38:42,163 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 22:39:42] 2025-10-13 20:38:42,163 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:39:42] 2025-10-13 20:38:42,413 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 22:39:42] 2025-10-13 20:38:42,413 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 22:39:42] 2025-10-13 20:38:42,414 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:39:42] 2025-10-13 20:38:42,414 | INFO     | will abort loop
[2025-10-13 22:39:42] 2025-10-13 20:38:42,527 | INFO     | all job control threads have been joined
[2025-10-13 22:39:42] 2025-10-13 20:38:42,934 | INFO     | all data control threads have been joined
[2025-10-13 22:39:42] 2025-10-13 20:38:43,168 | INFO     | [job] queue monitor thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:43,168 | INFO     | [job] retrieve thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:43,351 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:43,353 | INFO     | all payload control threads have been joined
[2025-10-13 22:39:42] 2025-10-13 20:38:43,383 | INFO     | [data] copytool_in thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:43,419 | INFO     | [job] job monitor thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:43,482 | INFO     | [payload] validate_post thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:43,529 | INFO     | [job] control thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:43,543 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 22:39:42] 2025-10-13 20:38:43,877 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:43,940 | INFO     | [data] control thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:43,977 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:43,987 | INFO     | [job] validate thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:44,016 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:44,211 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 22:39:42] 2025-10-13 20:38:44,359 | INFO     | [payload] control thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:44,577 | INFO     | [payload] failed_post thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:45,549 | INFO     | [data] copytool_out thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:38:48,218 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 22:39:42] 2025-10-13 20:39:12,620 | INFO     | PID=3371228 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 22:39:42] 2025-10-13 20:39:12,620 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 22:39:42] 2025-10-13 20:39:12,620 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 22:39:42] 2025-10-13 20:39:12,620 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 22:39:42] 2025-10-13 20:39:36,779 | INFO     | [monitor] cgroup control has ended
[2025-10-13 22:39:42] 2025-10-13 20:39:37,784 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139707386349376)>', '<ExcThread(monitor, started 139706629093120)>']
[2025-10-13 22:39:42] 2025-10-13 20:39:38,749 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 22:39:42] 2025-10-13 20:39:38,749 | INFO     | [monitor] control thread has ended
[2025-10-13 22:39:42] 2025-10-13 20:39:42,810 | INFO     | all workflow threads have been joined
[2025-10-13 22:39:42] 2025-10-13 20:39:42,810 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 22:39:42] 2025-10-13 20:39:42,811 | INFO     | traces error code: 0
[2025-10-13 22:39:42] 2025-10-13 20:39:42,811 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 22:39:42] 2025-10-13 20:39:42,861 [wrapper] ==== pilot stdout END ====
[2025-10-13 22:39:42] 2025-10-13 20:39:42,863 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 22:39:42] 2025-10-13 20:39:42,865 [wrapper] pilotpid: 3371228
[2025-10-13 22:39:42] 2025-10-13 20:39:42,867 [wrapper] Pilot exit status: 0
[2025-10-13 22:39:42] 2025-10-13 20:39:42,874 [wrapper] pandaids: 6841569027
[2025-10-13 22:39:42] 2025-10-13 20:39:42,890 [wrapper] cleanup supervisor_pilot 3389558 3371229
[2025-10-13 22:39:42] 2025-10-13 20:39:42,893 [wrapper] Test setup, not cleaning
[2025-10-13 22:39:42] 2025-10-13 20:39:42,895 [wrapper] apfmon messages muted
[2025-10-13 22:39:42] 2025-10-13 20:39:42,897 [wrapper] ==== wrapper stdout END ====
[2025-10-13 22:39:42] 2025-10-13 20:39:42,899 [wrapper] ==== wrapper stderr END ====
[2025-10-13 22:39:42]  *** Error codes and diagnostics ***
[2025-10-13 22:39:42]     "exeErrorCode": 0,
[2025-10-13 22:39:42]     "exeErrorDiag": "",
[2025-10-13 22:39:42]     "pilotErrorCode": 0,
[2025-10-13 22:39:42]     "pilotErrorDiag": "",
[2025-10-13 22:39:42]  *** Listing of results directory ***
[2025-10-13 22:39:42] total 408912
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc    557409 Oct 13 04:00 pilot3.tar.gz
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc      5112 Oct 13 04:52 queuedata.json
[2025-10-13 22:39:42] -rwx------ 1 boinc boinc     36292 Oct 13 04:53 runpilot2-wrapper.sh
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc       100 Oct 13 21:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 22:39:42] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 21:18 run_atlas
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc       105 Oct 13 21:18 job.xml
[2025-10-13 22:39:42] -rw-r--r-- 2 boinc boinc 219272915 Oct 13 21:18 EVNT.46676267._004310.pool.root.1
[2025-10-13 22:39:42] -rw-r--r-- 2 boinc boinc    569684 Oct 13 21:18 input.tar.gz
[2025-10-13 22:39:42] -rw-r--r-- 2 boinc boinc     15120 Oct 13 21:18 start_atlas.sh
[2025-10-13 22:39:42] drwxrwx--x 2 boinc boinc      4096 Oct 13 21:18 shared
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc         0 Oct 13 21:18 boinc_setup_complete
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc      6440 Oct 13 21:18 init_data.xml
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc         0 Oct 13 21:18 boinc_lockfile
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc      2550 Oct 13 21:18 pandaJob.out
[2025-10-13 22:39:42] -rw------- 1 boinc boinc    972799 Oct 13 21:18 agis_schedconf.cvmfs.json
[2025-10-13 22:39:42] -rw------- 1 boinc boinc   1560580 Oct 13 21:18 agis_ddmendpoints.agis.ALL.json
[2025-10-13 22:39:42] drwx------ 5 boinc boinc      4096 Oct 13 21:18 pilot3
[2025-10-13 22:39:42] -rw------- 1 boinc boinc 193617654 Oct 13 22:38 HITS.46676269._095322.pool.root.1
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc       529 Oct 13 22:38 boinc_task_state.xml
[2025-10-13 22:39:42] -rw------- 1 boinc boinc      1016 Oct 13 22:38 memory_monitor_summary.json
[2025-10-13 22:39:42] -rw------- 1 boinc boinc    266874 Oct 13 22:38 log.46676269._095322.job.log.tgz.1
[2025-10-13 22:39:42] -rw------- 1 boinc boinc      7761 Oct 13 22:38 heartbeat.json
[2025-10-13 22:39:42] -rw------- 1 boinc boinc        95 Oct 13 22:39 pilot_heartbeat.json
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc      8192 Oct 13 22:39 boinc_mmap_file
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc        27 Oct 13 22:39 wrapper_checkpoint.txt
[2025-10-13 22:39:42] -rw------- 1 boinc boinc      4938 Oct 13 22:39 pilotlog.txt
[2025-10-13 22:39:42] -rw------- 1 boinc boinc    707780 Oct 13 22:39 log.46676269._095322.job.log.1
[2025-10-13 22:39:42] -rw------- 1 boinc boinc       357 Oct 13 22:39 output.list
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc       620 Oct 13 22:39 runtime_log
[2025-10-13 22:39:42] -rw------- 1 boinc boinc    993280 Oct 13 22:39 result.tar.gz
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc      8782 Oct 13 22:39 runtime_log.err
[2025-10-13 22:39:42] -rw------- 1 boinc boinc       659 Oct 13 22:39 0O1LDmGsNS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxXmNDm5axHrn.diag
[2025-10-13 22:39:42] -rw-r--r-- 1 boinc boinc      7645 Oct 13 22:39 stderr.txt
[2025-10-13 22:39:42] HITS file was successfully produced:
[2025-10-13 22:39:42] -rw------- 1 boinc boinc 193617654 Oct 13 22:38 shared/HITS.pool.root.1
[2025-10-13 22:39:42]  *** Contents of shared directory: ***
[2025-10-13 22:39:42] total 404772
[2025-10-13 22:39:42] -rw-r--r-- 2 boinc boinc 219272915 Oct 13 21:18 ATLAS.root_0
[2025-10-13 22:39:42] -rw-r--r-- 2 boinc boinc    569684 Oct 13 21:18 input.tar.gz
[2025-10-13 22:39:42] -rw-r--r-- 2 boinc boinc     15120 Oct 13 21:18 start_atlas.sh
[2025-10-13 22:39:42] -rw------- 1 boinc boinc 193617654 Oct 13 22:38 HITS.pool.root.1
[2025-10-13 22:39:42] -rw------- 1 boinc boinc    993280 Oct 13 22:39 result.tar.gz
22:39:44 (3367507): run_atlas exited; CPU time 13737.294085
22:39:44 (3367507): called boinc_finish(0)

</stderr_txt>
]]>

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