Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 10:12:29 (7508): vboxwrapper version 26210
2025-10-13 10:12:29 (7508): BOINC client version: 8.2.4
2025-10-13 10:12:29 (7508): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-10-13 10:12:30 (7508): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 10:12:30 (7508): Create VM. (boinc_4895172ea7cbd102, slot#15)
2025-10-13 10:12:31 (7508): Setting Memory Size for VM. (4400MB)
2025-10-13 10:12:31 (7508): Setting CPU Count for VM. (4)
2025-10-13 10:12:31 (7508): Setting Chipset Options for VM.
2025-10-13 10:12:31 (7508): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 10:12:32 (7508): Setting Boot Options for VM.
2025-10-13 10:12:32 (7508): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 10:12:32 (7508): Enabling VM Network Access.
2025-10-13 10:12:33 (7508): Disabling USB Support for VM.
2025-10-13 10:12:33 (7508): Disabling COM Port Support for VM.
2025-10-13 10:12:33 (7508): Disabling LPT Port Support for VM.
2025-10-13 10:12:34 (7508): Disabling Audio Support for VM.
2025-10-13 10:12:34 (7508): Disabling Clipboard Support for VM.
2025-10-13 10:12:34 (7508): Disabling Drag and Drop Support for VM.
2025-10-13 10:12:34 (7508): Adding storage controller(s) to VM.
2025-10-13 10:12:35 (7508): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 10:12:35 (7508): Adding VirtualBox Guest Additions to VM.
2025-10-13 10:12:35 (7508): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 10:12:36 (7508): forwarding host port 60874 to guest port 80
2025-10-13 10:12:36 (7508): Enabling remote desktop for VM.
2025-10-13 10:12:36 (7508): Required extension pack not installed, remote desktop not enabled.
2025-10-13 10:12:36 (7508): Enabling shared directory for VM.
2025-10-13 10:12:37 (7508): Starting VM using VBoxManage interface. (boinc_4895172ea7cbd102, slot#15)
2025-10-13 10:12:44 (7508): Successfully started VM. (PID = '20852')
2025-10-13 10:12:44 (7508): Reporting VM Process ID to BOINC.
2025-10-13 10:12:44 (7508): Guest Log: BIOS: VirtualBox 7.2.0
2025-10-13 10:12:44 (7508): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 10:12:44 (7508): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 10:12:44 (7508): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 10:12:44 (7508): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 10:12:44 (7508): Detected: Web Application Enabled (http://localhost:60874)
2025-10-13 10:12:44 (7508): Preference change detected
2025-10-13 10:12:44 (7508): Setting CPU throttle for VM. (100%)
2025-10-13 10:12:45 (7508): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 10:12:46 (7508): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 10:12:46 (7508): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 10:12:49 (7508): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 10:12:49 (7508): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 10:12:49 (7508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 10:12:55 (7508): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 10:12:55 (7508): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 10:13:03 (7508): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 10:13:03 (7508): Guest Log: 00:00:00.000283 main     Log opened 2025-10-13T10:13:01.605978000Z
2025-10-13 10:13:03 (7508): Guest Log: 00:00:00.000510 main     OS Product: Linux
2025-10-13 10:13:03 (7508): Guest Log: 00:00:00.000577 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 10:13:03 (7508): Guest Log: 00:00:00.000611 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 10:13:03 (7508): Guest Log: 00:00:00.000642 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 10:13:03 (7508): Guest Log: 00:00:00.000643 main     Process ID: 1316
2025-10-13 10:13:03 (7508): Guest Log: 00:00:00.000644 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 10:13:03 (7508): Guest Log: 00:00:00.002121 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 10:13:03 (7508): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 10:13:03 (7508): Guest Log: [INFO] Mounting shared directory
2025-10-13 10:13:03 (7508): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 10:13:06 (7508): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 10:13:06 (7508): Guest Log: [INFO] Detected branch: prod
2025-10-13 10:13:06 (7508): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 10:13:06 (7508): Guest Log: Copying input files
2025-10-13 10:13:08 (7508): Guest Log: Copied input files into RunAtlas.
2025-10-13 10:13:08 (7508): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 10:13:08 (7508): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 10:13:08 (7508): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 10:13:08 (7508): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 10:13:13 (7508): Guest Log: 00:00:10.021571 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 521 140 000ns (GuestNow=1 760 346 793 097 039 000 ns GuestLast=1 760 350 381 618 179 000 ns fSetTimeLastLoop=true )
2025-10-13 10:13:16 (7508): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 10:13:16 (7508): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 10:13:16 (7508): Guest Log: 2.6.3.0 1596 0 32180 151654 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 10:13:17 (7508): Guest Log: copied the webapp to /var/www
2025-10-13 10:13:17 (7508): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-13 10:13:17 (7508): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-13 10:13:17 (7508): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 10:13:17 (7508): Guest Log:  *** Starting ATLAS job. (PandaID=6841070290 taskID=46676269) ***
2025-10-13 11:53:35 (7508): Status Report: Elapsed Time: '6000.000000'
2025-10-13 11:53:35 (7508): Status Report: CPU Time: '22168.250000'
2025-10-13 13:34:44 (7508): Status Report: Elapsed Time: '12000.000000'
2025-10-13 13:34:44 (7508): Status Report: CPU Time: '45654.859375'
2025-10-13 14:21:32 (7508): Guest Log:  *** Job finished ***
2025-10-13 14:21:32 (7508): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:09,209 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:09,209 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:24,001 | INFO     | [monitor] cgroup control has ended
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:25,161 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239254972224)>', '<ExcThread(monitor, started 140238953355008)>']
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:25,505 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:25,505 | INFO     | [monitor] control thread has ended
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,167 | INFO     | all workflow threads have been joined
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,168 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,168 | INFO     | traces error code: 0
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,168 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,308 [wrapper] ==== pilot stdout END ====
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,314 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,323 [wrapper] pilotpid: 5975
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,332 [wrapper] Pilot exit status: 0
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,436 [wrapper] pandaids: 6841070290
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,487 [wrapper] cleanup supervisor_pilot 16236 5976
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,496 [wrapper] Test setup, not cleaning
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,507 [wrapper] apfmon messages muted
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,516 [wrapper] ==== wrapper stdout END ====
2025-10-13 14:21:32 (7508): Guest Log: 2025-10-13 13:21:30,525 [wrapper] ==== wrapper stderr END ====
2025-10-13 14:21:32 (7508): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 14:21:32 (7508): Guest Log:     "exeErrorCode": 0,
2025-10-13 14:21:32 (7508): Guest Log:     "exeErrorDiag": "",
2025-10-13 14:21:32 (7508): Guest Log:     "pilotErrorCode": 0,
2025-10-13 14:21:32 (7508): Guest Log:     "pilotErrorDiag": "",
2025-10-13 14:21:32 (7508): Guest Log:  *** Listing of results directory ***
2025-10-13 14:21:32 (7508): Guest Log: total 197968
2025-10-13 14:21:32 (7508): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 13 01:18 pilot3.tar.gz
2025-10-13 14:21:32 (7508): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 13 01:23 runpilot2-wrapper.sh
2025-10-13 14:21:32 (7508): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 13 01:23 queuedata.json
2025-10-13 14:21:32 (7508): Guest Log: -rwxr-xr-x. 1 atlas atlas      8847 Oct 13 09:13 init_data.xml
2025-10-13 14:21:32 (7508): Guest Log: -rwxr-xr-x. 1 atlas atlas    569675 Oct 13 09:13 input.tar.gz
2025-10-13 14:21:32 (7508): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 09:13 start_atlas.sh
2025-10-13 14:21:32 (7508): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 09:13 EVNT.46676267._004355.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 14:21:32 (7508): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 13 09:13 pandaJob.out
2025-10-13 14:21:32 (7508): Guest Log: -rw-------. 1 atlas atlas    972857 Oct 13 09:14 agis_schedconf.cvmfs.json
2025-10-13 14:21:32 (7508): Guest Log: drwx------. 5 atlas atlas      4096 Oct 13 09:14 pilot3
2025-10-13 14:21:32 (7508): Guest Log: -rw-------. 1 atlas atlas 194147254 Oct 13 13:19 HITS.46676269._094095.pool.root.1
2025-10-13 14:21:32 (7508): Guest Log: -rw-------. 1 atlas atlas      1034 Oct 13 13:20 memory_monitor_summary.json
2025-10-13 14:21:32 (7508): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 13:20 pilot_heartbeat.json
2025-10-13 14:21:32 (7508): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 13:20 agis_ddmendpoints.agis.ALL.json
2025-10-13 14:21:32 (7508): Guest Log: -rw-------. 1 atlas atlas    410742 Oct 13 13:20 log.46676269._094095.job.log.tgz.1
2025-10-13 14:21:32 (7508): Guest Log: -rw-------. 1 atlas atlas      7825 Oct 13 13:20 heartbeat.json
2025-10-13 14:21:32 (7508): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 13 13:21 pilotlog.txt
2025-10-13 14:21:32 (7508): Guest Log: -rw-------. 1 atlas atlas   1958005 Oct 13 13:21 log.46676269._094095.job.log.1
2025-10-13 14:21:32 (7508): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 13:21 output.list
2025-10-13 14:21:32 (7508): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 13:21 runtime_log
2025-10-13 14:21:32 (7508): Guest Log: -rw-------. 1 atlas atlas   2385920 Oct 13 13:21 result.tar.gz
2025-10-13 14:21:32 (7508): Guest Log: -rw-r--r--. 1 atlas atlas      8664 Oct 13 13:21 runtime_log.err
2025-10-13 14:21:32 (7508): Guest Log: -rw-------. 1 atlas atlas       666 Oct 13 13:21 q9eNDmoSMS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmRSVMDmdqrrvm.diag
2025-10-13 14:21:32 (7508): Guest Log: Looking for outputfile HITS.46676269._094095.pool.root.1
2025-10-13 14:21:32 (7508): Guest Log: HITS file was successfully produced
2025-10-13 14:21:32 (7508): Guest Log: -rw-------. 1 atlas atlas 194147254 Oct 13 13:19 /home/atlas/RunAtlas/HITS.46676269._094095.pool.root.1
2025-10-13 14:21:34 (7508): Guest Log: Successfully finished the ATLAS job!
2025-10-13 14:21:34 (7508): Guest Log: Copying the results back to the shared directory!
2025-10-13 14:21:34 (7508): Guest Log:  *** Contents of shared directory: ***
2025-10-13 14:21:34 (7508): Guest Log: total 410284
2025-10-13 14:21:34 (7508): Guest Log: -rwxrwxrwx. 1 root root 222989454 Oct 13 09:12 ATLAS.root_0
2025-10-13 14:21:34 (7508): Guest Log: -rwxrwxrwx. 1 root root 194147254 Oct 13 13:21 HITS.pool.root.1
2025-10-13 14:21:34 (7508): Guest Log: -rwxrwxrwx. 1 root root      8847 Oct 13 09:12 init_data.xml
2025-10-13 14:21:34 (7508): Guest Log: -rwxrwxrwx. 1 root root    569675 Oct 13 09:04 input.tar.gz
2025-10-13 14:21:34 (7508): Guest Log: -rwxrwxrwx. 1 root root   2385920 Oct 13 13:21 result.tar.gz
2025-10-13 14:21:34 (7508): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 13 09:04 start_atlas.sh
2025-10-13 14:21:34 (7508): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 14:21:34 (7508): VM Completion File Detected.
2025-10-13 14:21:34 (7508): Powering off VM.
2025-10-13 14:21:35 (7508): Successfully stopped VM.
2025-10-13 14:21:35 (7508): Deregistering VM. (boinc_4895172ea7cbd102, slot#15)
2025-10-13 14:21:35 (7508): Removing network bandwidth throttle group from VM.
2025-10-13 14:21:35 (7508): Removing VM from VirtualBox.
2025-10-13 14:21:40 (7508): called boinc_finish(0)

</stderr_txt>
]]>

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