Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:07:50 (4220): wrapper (7.7.26015): starting
05:07:50 (4220): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 05:07:50] Arguments: --nthreads 12
[2025-10-13 05:07:50] Threads: 12
[2025-10-13 05:07:50] Checking for CVMFS
[2025-10-13 05:07:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:07:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:07:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:07:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:07:50] 2.11.2.0 6893 54035 87144 151654 1 59 13549644 20275200 1 130560 0 30675300 99.957 2547637 28038 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 05:07:50] CVMFS is ok
[2025-10-13 05:07:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:07:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:07:50] Further information can be found at the LHC@home message board.
[2025-10-13 05:07:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:07:50] Checking for apptainer binary...
[2025-10-13 05:07:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:07:50] Running /usr/bin/apptainer --version
[2025-10-13 05:07:50] apptainer version 1.3.2-1.el7
[2025-10-13 05:07:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:07:52] c-205-3.aglt2.org
[2025-10-13 05:07:52] apptainer works
[2025-10-13 05:07:52] Set ATHENA_PROC_NUMBER=12
[2025-10-13 05:07:52] Set ATHENA_CORE_NUMBER=12
[2025-10-13 05:07:52] Starting ATLAS job with PandaID=6841677861
[2025-10-13 05:07:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:22:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:22:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6841677861/log.46676269._095396.job.log.tgz.1
[2025-10-13 06:22:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/76/3c/log.46676269._095396.job.log.tgz.1
[2025-10-13 06:22:21]  workdir=None
[2025-10-13 06:22:21] ]
[2025-10-13 06:22:21] 2025-10-13 10:21:06,618 | INFO     | transferring file log.46676269._095396.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6841677861/log.46676269._095396.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 06:22:21] 2025-10-13 10:21:06,619 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6841677861/log.46676269._095396.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._095396.job
[2025-10-13 06:22:21] 2025-10-13 10:21:06,642 | INFO     | adding to output.list: log.46676269._095396.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/76/3c/log.46676269._095396.job.log.tg
[2025-10-13 06:22:21] 2025-10-13 10:21:06,643 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 06:22:21] 2025-10-13 10:21:06,644 | INFO     | summary of transferred files:
[2025-10-13 06:22:21] 2025-10-13 10:21:06,644 | INFO     |  -- lfn=log.46676269._095396.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 06:22:21] 2025-10-13 10:21:06,644 | INFO     | stage-out finished correctly
[2025-10-13 06:22:21] 2025-10-13 10:21:06,769 | INFO     | time since job start (4379s) is within the limit (172800.0s)
[2025-10-13 06:22:21] 2025-10-13 10:21:08,702 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 06:22:21] 2025-10-13 10:21:08,779 | INFO     | time since job start (4381s) is within the limit (172800.0s)
[2025-10-13 06:22:21] 2025-10-13 10:21:08,779 | INFO     | 4384s have passed since pilot start - server update state is 'RUNNING'
[2025-10-13 06:22:21] 2025-10-13 10:21:09,603 | INFO     | job 6841677861 has state=finished
[2025-10-13 06:22:21] 2025-10-13 10:21:09,604 | INFO     | preparing for final server update for job 6841677861 in state='finished'
[2025-10-13 06:22:21] 2025-10-13 10:21:09,677 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-13 06:22:21] 2025-10-13 10:21:09,677 | INFO     | this job has now completed (state=finished)
[2025-10-13 06:22:21] 2025-10-13 10:21:09,677 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 06:22:21] 2025-10-13 10:21:09,678 | INFO     | log transfer has been attempted: DONE
[2025-10-13 06:22:21] 2025-10-13 10:21:09,678 | INFO     | job 6841677861 has finished - writing final server update
[2025-10-13 06:22:21] 2025-10-13 10:21:09,678 | INFO     | total number of processed events: 400 (read)
[2025-10-13 06:22:21] 2025-10-13 10:21:09,679 | INFO     | executing command: lscpu
[2025-10-13 06:22:21] 2025-10-13 10:21:09,707 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 06:22:21] 2025-10-13 10:21:10,787 | INFO     | time since job start (4383s) is within the limit (172800.0s)
[2025-10-13 06:22:21] 2025-10-13 10:21:11,738 | WARNING  | process 14327 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 06:22:21] 2025-10-13 10:21:11,739 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841677861/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:22:21] 2025-10-13 10:21:11,836 | INFO     | number of running child processes to parent process 14327: 1
[2025-10-13 06:22:21] 2025-10-13 10:21:11,837 | INFO     | maximum number of monitored processes: 6
[2025-10-13 06:22:21] 2025-10-13 10:21:12,793 | INFO     | time since job start (4385s) is within the limit (172800.0s)
[2025-10-13 06:22:21] 2025-10-13 10:21:14,340 | INFO     | monitor loop #326: job 0:6841677861 is in state 'finished'
[2025-10-13 06:22:21] 2025-10-13 10:21:14,340 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:22:21] 2025-10-13 10:21:14,536 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 06:22:21] 2025-10-13 10:21:14,540 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1751.25
[2025-10-13 06:22:21] 2025-10-13 10:21:14,543 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841677861/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:22:21] 2025-10-13 10:21:14,543 | INFO     | extracted standard info from prmon json
[2025-10-13 06:22:21] 2025-10-13 10:21:14,543 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 06:22:21] 2025-10-13 10:21:14,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 06:22:21] 2025-10-13 10:21:14,544 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:22:21] 2025-10-13 10:21:14,544 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:22:21] 2025-10-13 10:21:14,546 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:22:21] 2025-10-13 10:21:14,546 | INFO     | sum of square deviations: 85136480.0
[2025-10-13 06:22:21] 2025-10-13 10:21:14,546 | INFO     | sum of deviations: -506129200.0
[2025-10-13 06:22:21] 2025-10-13 10:21:14,546 | INFO     | mean x: 1760348773.0
[2025-10-13 06:22:21] 2025-10-13 10:21:14,546 | INFO     | mean y: 2683588.5846153847
[2025-10-13 06:22:21] 2025-10-13 10:21:14,546 | INFO     | -- intersect: 10467808717.077967
[2025-10-13 06:22:21] 2025-10-13 10:21:14,547 | INFO     | intersect: 10467808717.077967
[2025-10-13 06:22:21] 2025-10-13 10:21:14,547 | INFO     | chi2: 0.027127674463551063
[2025-10-13 06:22:21] 2025-10-13 10:21:14,547 | INFO     | -- intersect: 10467808717.077967
[2025-10-13 06:22:21] 2025-10-13 10:21:14,547 | INFO     | current memory leak: -5.94 B/s (using 65 data points, chi2=0.03)
[2025-10-13 06:22:21] 2025-10-13 10:21:14,547 | INFO     | could have reported an average CPU frequency of 2048 MHz (6 samples)
[2025-10-13 06:22:21] 2025-10-13 10:21:14,548 | INFO     | ..............................
[2025-10-13 06:22:21] 2025-10-13 10:21:14,548 | INFO     | . Timing measurements:
[2025-10-13 06:22:21] 2025-10-13 10:21:14,548 | INFO     | . get job = 0 s
[2025-10-13 06:22:21] 2025-10-13 10:21:14,548 | INFO     | . initial setup = 2 s
[2025-10-13 06:22:21] 2025-10-13 10:21:14,548 | INFO     | . payload setup = 7 s
[2025-10-13 06:22:21] 2025-10-13 10:21:14,548 | INFO     | . stage-in = 0 s
[2025-10-13 06:22:21] 2025-10-13 10:21:14,548 | INFO     | . payload execution = 4351 s
[2025-10-13 06:22:21] 2025-10-13 10:21:14,548 | INFO     | . stage-out = 0 s
[2025-10-13 06:22:21] 2025-10-13 10:21:14,548 | INFO     | . log creation = 0 s
[2025-10-13 06:22:21] 2025-10-13 10:21:14,548 | INFO     | ..............................
[2025-10-13 06:22:21] 2025-10-13 10:21:14,798 | INFO     | time since job start (4387s) is within the limit (172800.0s)
[2025-10-13 06:22:21] 2025-10-13 10:21:14,958 | INFO     | 
[2025-10-13 06:22:21] 2025-10-13 10:21:14,959 | INFO     | job summary report
[2025-10-13 06:22:21] 2025-10-13 10:21:14,959 | INFO     | --------------------------------------------------
[2025-10-13 06:22:21] 2025-10-13 10:21:14,959 | INFO     | PanDA job id: 6841677861
[2025-10-13 06:22:21] 2025-10-13 10:21:14,959 | INFO     | task id: 46676269
[2025-10-13 06:22:21] 2025-10-13 10:21:14,959 | INFO     | errors: (none)
[2025-10-13 06:22:21] 2025-10-13 10:21:14,959 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:22:21] 2025-10-13 10:21:14,960 | INFO     | pilot state: finished 
[2025-10-13 06:22:21] 2025-10-13 10:21:14,960 | INFO     | transexitcode: 0
[2025-10-13 06:22:21] 2025-10-13 10:21:14,960 | INFO     | exeerrorcode: 0
[2025-10-13 06:22:21] 2025-10-13 10:21:14,960 | INFO     | exeerrordiag: 
[2025-10-13 06:22:21] 2025-10-13 10:21:14,960 | INFO     | exitcode: 0
[2025-10-13 06:22:21] 2025-10-13 10:21:14,960 | INFO     | exitmsg: OK
[2025-10-13 06:22:21] 2025-10-13 10:21:14,961 | INFO     | cpuconsumptiontime: 46124 s
[2025-10-13 06:22:21] 2025-10-13 10:21:14,961 | INFO     | nevents: 400
[2025-10-13 06:22:21] 2025-10-13 10:21:14,961 | INFO     | neventsw: 0
[2025-10-13 06:22:21] 2025-10-13 10:21:14,961 | INFO     | pid: 14327
[2025-10-13 06:22:21] 2025-10-13 10:21:14,961 | INFO     | pgrp: 14327
[2025-10-13 06:22:21] 2025-10-13 10:21:14,961 | INFO     | corecount: 12
[2025-10-13 06:22:21] 2025-10-13 10:21:14,961 | INFO     | event service: False
[2025-10-13 06:22:21] 2025-10-13 10:21:14,962 | INFO     | sizes: {0: 2348801, 5: 2349063, 11: 2349119, 4362: 2375164, 4363: 2384162, 4365: 2384218, 4371: 2384540}
[2025-10-13 06:22:21] 2025-10-13 10:21:14,962 | INFO     | --------------------------------------------------
[2025-10-13 06:22:21] 2025-10-13 10:21:14,962 | INFO     | 
[2025-10-13 06:22:21] 2025-10-13 10:21:14,962 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 06:22:21] 2025-10-13 10:21:14,987 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,987 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,987 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,987 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,988 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,988 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,988 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,988 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,988 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,988 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,989 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,989 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,989 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,989 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,989 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,989 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,990 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,990 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:22:21] 2025-10-13 10:21:14,990 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,990 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:22:21] 2025-10-13 10:21:14,990 | INFO     | job 6841677861 has completed (purged errors)
[2025-10-13 06:22:21] 2025-10-13 10:21:14,991 | INFO     | overall cleanup function is called
[2025-10-13 06:22:21] 2025-10-13 10:21:15,998 | INFO     | --- collectZombieJob: --- 10, [14327]
[2025-10-13 06:22:21] 2025-10-13 10:21:15,999 | INFO     | zombie collector waiting for pid 14327
[2025-10-13 06:22:21] 2025-10-13 10:21:15,999 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:22:21] 2025-10-13 10:21:15,999 | INFO     | collected zombie processes
[2025-10-13 06:22:21] 2025-10-13 10:21:15,999 | INFO     | will attempt to kill all subprocesses of pid=14327
[2025-10-13 06:22:21] 2025-10-13 10:21:16,091 | INFO     | process IDs to be killed: [14327] (in reverse order)
[2025-10-13 06:22:21] 2025-10-13 10:21:16,259 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:22:21] 2025-10-13 10:21:16,260 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:22:21] 2025-10-13 10:21:16,263 | INFO     | did not find any defunct processes belonging to 14327
[2025-10-13 06:22:21] 2025-10-13 10:21:16,265 | INFO     | did not find any defunct processes belonging to 14327
[2025-10-13 06:22:21] 2025-10-13 10:21:16,265 | INFO     | ready for new job
[2025-10-13 06:22:21] 2025-10-13 10:21:16,265 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:22:21] 2025-10-13 10:21:16,267 | INFO     | ***************************************
[2025-10-13 06:22:21] 2025-10-13 10:21:16,267 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:22:21] 2025-10-13 10:21:16,267 | INFO     | ***************************************
[2025-10-13 06:22:21] 2025-10-13 10:21:16,267 | INFO     | 
[2025-10-13 06:22:21] 2025-10-13 10:21:16,268 | INFO     | architecture information:
[2025-10-13 06:22:21] 2025-10-13 10:21:16,268 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:22:21] 2025-10-13 10:21:16,284 | INFO     | cat /etc/os-release:
[2025-10-13 06:22:21] NAME="CentOS Linux"
[2025-10-13 06:22:21] VERSION="7 (Core)"
[2025-10-13 06:22:21] ID="centos"
[2025-10-13 06:22:21] ID_LIKE="rhel fedora"
[2025-10-13 06:22:21] VERSION_ID="7"
[2025-10-13 06:22:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:22:21] ANSI_COLOR="0;31"
[2025-10-13 06:22:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:22:21] HOME_URL="https://www.centos.org/"
[2025-10-13 06:22:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:22:21] 
[2025-10-13 06:22:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:22:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:22:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:22:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:22:21] 
[2025-10-13 06:22:21] 2025-10-13 10:21:16,284 | INFO     | ***************************************
[2025-10-13 06:22:21] 2025-10-13 10:21:16,787 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 06:22:21] 2025-10-13 10:21:16,804 | INFO     | sufficient remaining disk space (29481762816 B)
[2025-10-13 06:22:21] 2025-10-13 10:21:16,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:22:21] 2025-10-13 10:21:16,804 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:22:21] 2025-10-13 10:21:16,805 | INFO     | update_server=False
[2025-10-13 06:22:21] 2025-10-13 10:21:16,805 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:22:21] 2025-10-13 10:21:16,843 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 06:22:21] 2025-10-13 10:21:16,844 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 06:22:21] 2025-10-13 10:21:16,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:22:21] 2025-10-13 10:21:16,844 | INFO     | will abort loop
[2025-10-13 06:22:21] 2025-10-13 10:21:17,241 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:22:21] 2025-10-13 10:21:17,611 | INFO     | all data control threads have been joined
[2025-10-13 06:22:21] 2025-10-13 10:21:17,810 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:17,811 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:17,833 | INFO     | all job control threads have been joined
[2025-10-13 06:22:21] 2025-10-13 10:21:17,849 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:18,111 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:18,228 | INFO     | all payload control threads have been joined
[2025-10-13 06:22:21] 2025-10-13 10:21:18,244 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:18,613 | INFO     | [data] control thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:18,672 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:18,839 | INFO     | [job] control thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:19,030 | INFO     | [job] validate thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:19,124 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:19,233 | INFO     | [payload] control thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:19,246 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:19,293 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:22:21] 2025-10-13 10:21:19,305 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:19,643 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:22:21] 2025-10-13 10:21:20,649 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:23,299 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:27,075 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:22:21] 2025-10-13 10:21:28,080 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:22:21] 2025-10-13 10:21:48,000 | INFO     | PID=7971 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 06:22:21] 2025-10-13 10:21:48,000 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:22:21] 2025-10-13 10:21:48,000 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:22:21] 2025-10-13 10:21:48,001 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:22:21] 2025-10-13 10:22:13,940 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:22:21] 2025-10-13 10:22:15,685 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140290479753024)>', '<ExcThread(monitor, started 140290039985920)>']
[2025-10-13 06:22:21] 2025-10-13 10:22:16,137 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:22:21] 2025-10-13 10:22:16,137 | INFO     | [monitor] control thread has ended
[2025-10-13 06:22:21] 2025-10-13 10:22:20,701 | INFO     | all workflow threads have been joined
[2025-10-13 06:22:21] 2025-10-13 10:22:20,701 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:22:21] 2025-10-13 10:22:20,701 | INFO     | traces error code: 0
[2025-10-13 06:22:21] 2025-10-13 10:22:20,702 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:22:21] 2025-10-13 10:22:20,798 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:22:21] 2025-10-13 10:22:20,801 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:22:21] 2025-10-13 10:22:20,805 [wrapper] pilotpid: 7971
[2025-10-13 06:22:21] 2025-10-13 10:22:20,809 [wrapper] Pilot exit status: 0
[2025-10-13 06:22:21] 2025-10-13 10:22:20,823 [wrapper] pandaids: 6841677861
[2025-10-13 06:22:21] 2025-10-13 10:22:20,869 [wrapper] cleanup supervisor_pilot 28022 7972
[2025-10-13 06:22:21] 2025-10-13 10:22:20,873 [wrapper] Test setup, not cleaning
[2025-10-13 06:22:21] 2025-10-13 10:22:20,877 [wrapper] apfmon messages muted
[2025-10-13 06:22:21] 2025-10-13 10:22:20,881 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:22:21] 2025-10-13 10:22:20,885 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:22:21]  *** Error codes and diagnostics ***
[2025-10-13 06:22:21]     "exeErrorCode": 0,
[2025-10-13 06:22:21]     "exeErrorDiag": "",
[2025-10-13 06:22:21]     "pilotErrorCode": 0,
[2025-10-13 06:22:21]     "pilotErrorDiag": "",
[2025-10-13 06:22:21]  *** Listing of results directory ***
[2025-10-13 06:22:21] total 417540
[2025-10-13 06:22:21] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 22:00 pilot3.tar.gz
[2025-10-13 06:22:21] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 22:58 queuedata.json
[2025-10-13 06:22:21] -rwx------ 1 boincer umatlas     36292 Oct 12 23:00 runpilot2-wrapper.sh
[2025-10-13 06:22:21] -rw-r--r-- 1 boincer umatlas       100 Oct 13 05:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:22:21] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 05:07 run_atlas
[2025-10-13 06:22:21] -rw-r--r-- 1 boincer umatlas       105 Oct 13 05:07 job.xml
[2025-10-13 06:22:21] -rw-r--r-- 2 boincer umatlas 223591276 Oct 13 05:07 EVNT.46676267._002628.pool.root.1
[2025-10-13 06:22:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 05:07 start_atlas.sh
[2025-10-13 06:22:21] drwxrwx--x 2 boincer umatlas      4096 Oct 13 05:07 shared
[2025-10-13 06:22:21] -rw-r--r-- 2 boincer umatlas    569684 Oct 13 05:07 input.tar.gz
[2025-10-13 06:22:21] -rw-r--r-- 1 boincer umatlas         0 Oct 13 05:07 boinc_lockfile
[2025-10-13 06:22:21] -rw-r--r-- 1 boincer umatlas      2547 Oct 13 05:07 pandaJob.out
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas    972857 Oct 13 05:08 agis_schedconf.cvmfs.json
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas   1560580 Oct 13 05:08 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:22:21] drwx------ 5 boincer umatlas      4096 Oct 13 05:08 pilot3
[2025-10-13 06:22:21] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 06:19 init_data.xml
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas 198065948 Oct 13 06:20 HITS.46676269._095396.pool.root.1
[2025-10-13 06:22:21] -rw-r--r-- 1 boincer umatlas       529 Oct 13 06:20 boinc_task_state.xml
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas      1050 Oct 13 06:21 memory_monitor_summary.json
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas        95 Oct 13 06:21 pilot_heartbeat.json
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas    368235 Oct 13 06:21 log.46676269._095396.job.log.tgz.1
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas      7844 Oct 13 06:21 heartbeat.json
[2025-10-13 06:22:21] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 06:22 boinc_mmap_file
[2025-10-13 06:22:21] -rw-r--r-- 1 boincer umatlas        27 Oct 13 06:22 wrapper_checkpoint.txt
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas      5003 Oct 13 06:22 pilotlog.txt
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas    637521 Oct 13 06:22 log.46676269._095396.job.log.1
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas       357 Oct 13 06:22 output.list
[2025-10-13 06:22:21] -rw-r--r-- 1 boincer umatlas       620 Oct 13 06:22 runtime_log
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas   1024000 Oct 13 06:22 result.tar.gz
[2025-10-13 06:22:21] -rw-r--r-- 1 boincer umatlas      8700 Oct 13 06:22 runtime_log.err
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas       658 Oct 13 06:22 8BVLDmIyNS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAZmNDmvFvOQn.diag
[2025-10-13 06:22:21] -rw-r--r-- 1 boincer umatlas     22211 Oct 13 06:22 stderr.txt
[2025-10-13 06:22:21] HITS file was successfully produced:
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas 198065948 Oct 13 06:20 shared/HITS.pool.root.1
[2025-10-13 06:22:21]  *** Contents of shared directory: ***
[2025-10-13 06:22:21] total 413356
[2025-10-13 06:22:21] -rw-r--r-- 2 boincer umatlas 223591276 Oct 13 05:07 ATLAS.root_0
[2025-10-13 06:22:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 05:07 start_atlas.sh
[2025-10-13 06:22:21] -rw-r--r-- 2 boincer umatlas    569684 Oct 13 05:07 input.tar.gz
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas 198065948 Oct 13 06:20 HITS.pool.root.1
[2025-10-13 06:22:21] -rw------- 1 boincer umatlas   1024000 Oct 13 06:22 result.tar.gz
06:22:22 (4220): run_atlas exited; CPU time 46093.354523
06:22:22 (4220): called boinc_finish(0)

</stderr_txt>
]]>

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