Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:06:15 (28491): wrapper (7.7.26015): starting
05:06:15 (28491): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 05:06:15] Arguments: --nthreads 12
[2025-10-13 05:06:15] Threads: 12
[2025-10-13 05:06:15] Checking for CVMFS
[2025-10-13 05:06:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:06:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:06:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:06:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:06:16] 2.11.2.0 2949 224120 95964 151654 2 59 10455594 20275200 1 130560 1 109812925 99.984 12403884 12112 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 05:06:16] CVMFS is ok
[2025-10-13 05:06:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:06:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:06:16] Further information can be found at the LHC@home message board.
[2025-10-13 05:06:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:06:16] Checking for apptainer binary...
[2025-10-13 05:06:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:06:16] Running /usr/bin/apptainer --version
[2025-10-13 05:06:16] apptainer version 1.3.2-1.el7
[2025-10-13 05:06:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:06:17] c-205-13.aglt2.org
[2025-10-13 05:06:17] apptainer works
[2025-10-13 05:06:17] Set ATHENA_PROC_NUMBER=12
[2025-10-13 05:06:17] Set ATHENA_CORE_NUMBER=12
[2025-10-13 05:06:17] Starting ATLAS job with PandaID=6842574604
[2025-10-13 05:06:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:18:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:18:44]  protocol_id=None
[2025-10-13 06:18:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 06:18:44]  replicas=None
[2025-10-13 06:18:44]  scope=mc23_13p6TeV
[2025-10-13 06:18:44]  status=None
[2025-10-13 06:18:44]  status_code=0
[2025-10-13 06:18:44]  storage_token=
[2025-10-13 06:18:44]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6842574604/log.46676269._096322.job.log.tgz.1
[2025-10-13 06:18:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5f/a3/log.46676269._096322.job.log.tgz.1
[2025-10-13 06:18:44]  workdir=None
[2025-10-13 06:18:44] ]
[2025-10-13 06:18:44] 2025-10-13 10:17:41,420 | INFO     | transferring file log.46676269._096322.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6842574604/log.46676269._096322.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 06:18:44] 2025-10-13 10:17:41,420 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6842574604/log.46676269._096322.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._096322.job
[2025-10-13 06:18:44] 2025-10-13 10:17:41,442 | INFO     | adding to output.list: log.46676269._096322.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5f/a3/log.46676269._096322.job.log.tg
[2025-10-13 06:18:44] 2025-10-13 10:17:41,443 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 06:18:44] 2025-10-13 10:17:41,443 | INFO     | summary of transferred files:
[2025-10-13 06:18:44] 2025-10-13 10:17:41,443 | INFO     |  -- lfn=log.46676269._096322.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 06:18:44] 2025-10-13 10:17:41,444 | INFO     | stage-out finished correctly
[2025-10-13 06:18:44] 2025-10-13 10:17:41,528 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 06:18:44] 2025-10-13 10:17:41,586 | INFO     | time since job start (4269s) is within the limit (172800.0s)
[2025-10-13 06:18:44] 2025-10-13 10:17:42,833 | INFO     | monitor loop #319: job 0:6842574604 is in state 'finished'
[2025-10-13 06:18:44] 2025-10-13 10:17:42,834 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:18:44] 2025-10-13 10:17:42,845 | INFO     | job 6842574604 has state=finished
[2025-10-13 06:18:44] 2025-10-13 10:17:42,845 | INFO     | preparing for final server update for job 6842574604 in state='finished'
[2025-10-13 06:18:44] 2025-10-13 10:17:42,846 | INFO     | this job has now completed (state=finished)
[2025-10-13 06:18:44] 2025-10-13 10:17:42,846 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 06:18:44] 2025-10-13 10:17:42,846 | INFO     | log transfer has been attempted: DONE
[2025-10-13 06:18:44] 2025-10-13 10:17:42,846 | INFO     | job 6842574604 has finished - writing final server update
[2025-10-13 06:18:44] 2025-10-13 10:17:42,847 | INFO     | total number of processed events: 400 (read)
[2025-10-13 06:18:44] 2025-10-13 10:17:42,848 | INFO     | executing command: lscpu
[2025-10-13 06:18:44] 2025-10-13 10:17:42,875 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 06:18:44] 2025-10-13 10:17:43,592 | INFO     | time since job start (4271s) is within the limit (172800.0s)
[2025-10-13 06:18:44] 2025-10-13 10:17:45,346 | INFO     | monitor loop #320: job 0:6842574604 is in state 'finished'
[2025-10-13 06:18:44] 2025-10-13 10:17:45,346 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:18:44] 2025-10-13 10:17:45,597 | INFO     | time since job start (4273s) is within the limit (172800.0s)
[2025-10-13 06:18:44] 2025-10-13 10:17:47,525 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 06:18:44] 2025-10-13 10:17:47,529 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-13 06:18:44] 2025-10-13 10:17:47,531 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6842574604/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:18:44] 2025-10-13 10:17:47,532 | INFO     | extracted standard info from prmon json
[2025-10-13 06:18:44] 2025-10-13 10:17:47,532 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 06:18:44] 2025-10-13 10:17:47,532 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 06:18:44] 2025-10-13 10:17:47,532 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:18:44] 2025-10-13 10:17:47,532 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:18:44] 2025-10-13 10:17:47,534 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:18:44] 2025-10-13 10:17:47,534 | INFO     | sum of square deviations: 77515872.0
[2025-10-13 06:18:44] 2025-10-13 10:17:47,534 | INFO     | sum of deviations: -1272336536.0
[2025-10-13 06:18:44] 2025-10-13 10:17:47,534 | INFO     | mean x: 1760348617.0
[2025-10-13 06:18:44] 2025-10-13 10:17:47,534 | INFO     | mean y: 2688500.904761905
[2025-10-13 06:18:44] 2025-10-13 10:17:47,535 | INFO     | -- intersect: 28896846609.661777
[2025-10-13 06:18:44] 2025-10-13 10:17:47,535 | INFO     | intersect: 28896846609.661777
[2025-10-13 06:18:44] 2025-10-13 10:17:47,535 | INFO     | chi2: 0.03396477902631078
[2025-10-13 06:18:44] 2025-10-13 10:17:47,535 | INFO     | -- intersect: 28896846609.661777
[2025-10-13 06:18:44] 2025-10-13 10:17:47,535 | INFO     | current memory leak: -16.41 B/s (using 63 data points, chi2=0.03)
[2025-10-13 06:18:44] 2025-10-13 10:17:47,535 | INFO     | could have reported an average CPU frequency of 2028 MHz (6 samples)
[2025-10-13 06:18:44] 2025-10-13 10:17:47,536 | INFO     | ..............................
[2025-10-13 06:18:44] 2025-10-13 10:17:47,536 | INFO     | . Timing measurements:
[2025-10-13 06:18:44] 2025-10-13 10:17:47,536 | INFO     | . get job = 0 s
[2025-10-13 06:18:44] 2025-10-13 10:17:47,536 | INFO     | . initial setup = 2 s
[2025-10-13 06:18:44] 2025-10-13 10:17:47,536 | INFO     | . payload setup = 7 s
[2025-10-13 06:18:44] 2025-10-13 10:17:47,536 | INFO     | . stage-in = 0 s
[2025-10-13 06:18:44] 2025-10-13 10:17:47,536 | INFO     | . payload execution = 4241 s
[2025-10-13 06:18:44] 2025-10-13 10:17:47,536 | INFO     | . stage-out = 0 s
[2025-10-13 06:18:44] 2025-10-13 10:17:47,536 | INFO     | . log creation = 0 s
[2025-10-13 06:18:44] 2025-10-13 10:17:47,536 | INFO     | ..............................
[2025-10-13 06:18:44] 2025-10-13 10:17:47,607 | INFO     | time since job start (4275s) is within the limit (172800.0s)
[2025-10-13 06:18:44] 2025-10-13 10:17:47,619 | INFO     | 
[2025-10-13 06:18:44] 2025-10-13 10:17:47,619 | INFO     | job summary report
[2025-10-13 06:18:44] 2025-10-13 10:17:47,620 | INFO     | --------------------------------------------------
[2025-10-13 06:18:44] 2025-10-13 10:17:47,620 | INFO     | PanDA job id: 6842574604
[2025-10-13 06:18:44] 2025-10-13 10:17:47,620 | INFO     | task id: 46676269
[2025-10-13 06:18:44] 2025-10-13 10:17:47,620 | INFO     | errors: (none)
[2025-10-13 06:18:44] 2025-10-13 10:17:47,620 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:18:44] 2025-10-13 10:17:47,620 | INFO     | pilot state: finished 
[2025-10-13 06:18:44] 2025-10-13 10:17:47,621 | INFO     | transexitcode: 0
[2025-10-13 06:18:44] 2025-10-13 10:17:47,621 | INFO     | exeerrorcode: 0
[2025-10-13 06:18:44] 2025-10-13 10:17:47,621 | INFO     | exeerrordiag: 
[2025-10-13 06:18:44] 2025-10-13 10:17:47,621 | INFO     | exitcode: 0
[2025-10-13 06:18:44] 2025-10-13 10:17:47,621 | INFO     | exitmsg: OK
[2025-10-13 06:18:44] 2025-10-13 10:17:47,621 | INFO     | cpuconsumptiontime: 46052 s
[2025-10-13 06:18:44] 2025-10-13 10:17:47,622 | INFO     | nevents: 400
[2025-10-13 06:18:44] 2025-10-13 10:17:47,622 | INFO     | neventsw: 0
[2025-10-13 06:18:44] 2025-10-13 10:17:47,622 | INFO     | pid: 7972
[2025-10-13 06:18:44] 2025-10-13 10:17:47,622 | INFO     | pgrp: 7972
[2025-10-13 06:18:44] 2025-10-13 10:17:47,622 | INFO     | corecount: 12
[2025-10-13 06:18:44] 2025-10-13 10:17:47,622 | INFO     | event service: False
[2025-10-13 06:18:44] 2025-10-13 10:17:47,623 | INFO     | sizes: {0: 2348756, 5: 2349018, 11: 2349074, 4252: 2375122, 4253: 2384176, 4259: 2384314}
[2025-10-13 06:18:44] 2025-10-13 10:17:47,623 | INFO     | --------------------------------------------------
[2025-10-13 06:18:44] 2025-10-13 10:17:47,623 | INFO     | 
[2025-10-13 06:18:44] 2025-10-13 10:17:47,623 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 06:18:44] 2025-10-13 10:17:47,647 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,647 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,648 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,648 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,648 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,648 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,648 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,648 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,649 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,649 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,649 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,649 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,649 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,650 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:18:44] 2025-10-13 10:17:47,650 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,650 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:18:44] 2025-10-13 10:17:47,650 | INFO     | job 6842574604 has completed (purged errors)
[2025-10-13 06:18:44] 2025-10-13 10:17:47,651 | INFO     | overall cleanup function is called
[2025-10-13 06:18:44] 2025-10-13 10:17:48,658 | INFO     | --- collectZombieJob: --- 10, [7972]
[2025-10-13 06:18:44] 2025-10-13 10:17:48,658 | INFO     | zombie collector waiting for pid 7972
[2025-10-13 06:18:44] 2025-10-13 10:17:48,659 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:18:44] 2025-10-13 10:17:48,659 | INFO     | collected zombie processes
[2025-10-13 06:18:44] 2025-10-13 10:17:48,659 | INFO     | will attempt to kill all subprocesses of pid=7972
[2025-10-13 06:18:44] 2025-10-13 10:17:48,747 | INFO     | process IDs to be killed: [7972] (in reverse order)
[2025-10-13 06:18:44] 2025-10-13 10:17:48,798 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:18:44] 2025-10-13 10:17:48,798 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:18:44] 2025-10-13 10:17:48,801 | INFO     | did not find any defunct processes belonging to 7972
[2025-10-13 06:18:44] 2025-10-13 10:17:48,803 | INFO     | did not find any defunct processes belonging to 7972
[2025-10-13 06:18:44] 2025-10-13 10:17:48,804 | INFO     | ready for new job
[2025-10-13 06:18:44] 2025-10-13 10:17:48,804 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:18:44] 2025-10-13 10:17:48,805 | INFO     | ***************************************
[2025-10-13 06:18:44] 2025-10-13 10:17:48,805 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:18:44] 2025-10-13 10:17:48,805 | INFO     | ***************************************
[2025-10-13 06:18:44] 2025-10-13 10:17:48,805 | INFO     | 
[2025-10-13 06:18:44] 2025-10-13 10:17:48,806 | INFO     | architecture information:
[2025-10-13 06:18:44] 2025-10-13 10:17:48,806 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:18:44] 2025-10-13 10:17:48,822 | INFO     | cat /etc/os-release:
[2025-10-13 06:18:44] NAME="CentOS Linux"
[2025-10-13 06:18:44] VERSION="7 (Core)"
[2025-10-13 06:18:44] ID="centos"
[2025-10-13 06:18:44] ID_LIKE="rhel fedora"
[2025-10-13 06:18:44] VERSION_ID="7"
[2025-10-13 06:18:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:18:44] ANSI_COLOR="0;31"
[2025-10-13 06:18:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:18:44] HOME_URL="https://www.centos.org/"
[2025-10-13 06:18:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:18:44] 
[2025-10-13 06:18:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:18:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:18:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:18:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:18:44] 
[2025-10-13 06:18:44] 2025-10-13 10:17:48,823 | INFO     | ***************************************
[2025-10-13 06:18:44] 2025-10-13 10:17:49,326 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 06:18:44] 2025-10-13 10:17:49,343 | INFO     | sufficient remaining disk space (29371662336 B)
[2025-10-13 06:18:44] 2025-10-13 10:17:49,344 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:18:44] 2025-10-13 10:17:49,344 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:18:44] 2025-10-13 10:17:49,344 | INFO     | update_server=False
[2025-10-13 06:18:44] 2025-10-13 10:17:49,344 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:18:44] 2025-10-13 10:17:49,345 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 06:18:44] 2025-10-13 10:17:49,345 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:18:44] 2025-10-13 10:17:49,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:18:44] 2025-10-13 10:17:49,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:18:44] 2025-10-13 10:17:49,346 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:18:44] 2025-10-13 10:17:49,346 | INFO     | aborting loop
[2025-10-13 06:18:44] 2025-10-13 10:17:49,346 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:18:44] 2025-10-13 10:17:49,539 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:18:44] 2025-10-13 10:17:49,914 | INFO     | all data control threads have been joined
[2025-10-13 06:18:44] 2025-10-13 10:17:50,125 | INFO     | all job control threads have been joined
[2025-10-13 06:18:44] 2025-10-13 10:17:50,308 | INFO     | all payload control threads have been joined
[2025-10-13 06:18:44] 2025-10-13 10:17:50,350 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:50,351 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:50,352 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:50,397 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:50,570 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:50,573 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:50,612 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:50,919 | INFO     | [data] control thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:51,130 | INFO     | [job] control thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:51,298 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:51,313 | INFO     | [payload] control thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:51,384 | INFO     | [job] validate thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:51,507 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:51,544 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:52,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:18:44] 2025-10-13 10:17:56,128 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:17:59,833 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:18:44] 2025-10-13 10:18:00,838 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:18:44] 2025-10-13 10:18:38,649 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:18:44] 2025-10-13 10:18:38,930 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208220264256)>', '<ExcThread(monitor, started 140207638693632)>']
[2025-10-13 06:18:44] 2025-10-13 10:18:39,591 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:18:44] 2025-10-13 10:18:39,591 | INFO     | [monitor] control thread has ended
[2025-10-13 06:18:44] 2025-10-13 10:18:43,956 | INFO     | all workflow threads have been joined
[2025-10-13 06:18:44] 2025-10-13 10:18:43,956 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:18:44] 2025-10-13 10:18:43,961 | INFO     | traces error code: 0
[2025-10-13 06:18:44] 2025-10-13 10:18:43,962 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:18:44] 2025-10-13 10:18:44,070 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:18:44] 2025-10-13 10:18:44,074 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:18:44] 2025-10-13 10:18:44,078 [wrapper] pilotpid: 32749
[2025-10-13 06:18:44] 2025-10-13 10:18:44,081 [wrapper] Pilot exit status: 0
[2025-10-13 06:18:44] 2025-10-13 10:18:44,098 [wrapper] pandaids: 6842574604
[2025-10-13 06:18:44] 2025-10-13 10:18:44,143 [wrapper] cleanup supervisor_pilot 20592 32750
[2025-10-13 06:18:44] 2025-10-13 10:18:44,147 [wrapper] Test setup, not cleaning
[2025-10-13 06:18:44] 2025-10-13 10:18:44,150 [wrapper] apfmon messages muted
[2025-10-13 06:18:44] 2025-10-13 10:18:44,154 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:18:44] 2025-10-13 10:18:44,158 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:18:44]  *** Error codes and diagnostics ***
[2025-10-13 06:18:44]     "exeErrorCode": 0,
[2025-10-13 06:18:44]     "exeErrorDiag": "",
[2025-10-13 06:18:44]     "pilotErrorCode": 0,
[2025-10-13 06:18:44]     "pilotErrorDiag": "",
[2025-10-13 06:18:44]  *** Listing of results directory ***
[2025-10-13 06:18:44] total 406308
[2025-10-13 06:18:44] -rw-r--r-- 1 boincer umatlas      5112 Oct 13 00:58 queuedata.json
[2025-10-13 06:18:44] -rwx------ 1 boincer umatlas     36292 Oct 13 00:59 runpilot2-wrapper.sh
[2025-10-13 06:18:44] -rw-r--r-- 1 boincer umatlas    557409 Oct 13 00:59 pilot3.tar.gz
[2025-10-13 06:18:44] -rw-r--r-- 1 boincer umatlas       100 Oct 13 05:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:18:44] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 05:06 run_atlas
[2025-10-13 06:18:44] -rw-r--r-- 1 boincer umatlas       105 Oct 13 05:06 job.xml
[2025-10-13 06:18:44] -rw-r--r-- 2 boincer umatlas 217692206 Oct 13 05:06 EVNT.46676267._004823.pool.root.1
[2025-10-13 06:18:44] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 05:06 start_atlas.sh
[2025-10-13 06:18:44] drwxrwx--x 2 boincer umatlas      4096 Oct 13 05:06 shared
[2025-10-13 06:18:44] -rw-r--r-- 2 boincer umatlas    569680 Oct 13 05:06 input.tar.gz
[2025-10-13 06:18:44] -rw-r--r-- 1 boincer umatlas         0 Oct 13 05:06 boinc_lockfile
[2025-10-13 06:18:44] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 05:06 pandaJob.out
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas    972857 Oct 13 05:06 agis_schedconf.cvmfs.json
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas   1560580 Oct 13 05:06 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:18:44] drwx------ 5 boincer umatlas      4096 Oct 13 05:06 pilot3
[2025-10-13 06:18:44] -rw-r--r-- 1 boincer umatlas      5953 Oct 13 06:10 init_data.xml
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas 192458606 Oct 13 06:17 HITS.46676269._096322.pool.root.1
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas        95 Oct 13 06:17 pilot_heartbeat.json
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas      1049 Oct 13 06:17 memory_monitor_summary.json
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas    384159 Oct 13 06:17 log.46676269._096322.job.log.tgz.1
[2025-10-13 06:18:44] -rw-r--r-- 1 boincer umatlas       530 Oct 13 06:17 boinc_task_state.xml
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas      7852 Oct 13 06:17 heartbeat.json
[2025-10-13 06:18:44] -rw-r--r-- 1 boincer umatlas        27 Oct 13 06:18 wrapper_checkpoint.txt
[2025-10-13 06:18:44] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 06:18 boinc_mmap_file
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas      4624 Oct 13 06:18 pilotlog.txt
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas    623104 Oct 13 06:18 log.46676269._096322.job.log.1
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas       357 Oct 13 06:18 output.list
[2025-10-13 06:18:44] -rw-r--r-- 1 boincer umatlas       620 Oct 13 06:18 runtime_log
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas   1024000 Oct 13 06:18 result.tar.gz
[2025-10-13 06:18:44] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 06:18 runtime_log.err
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas       659 Oct 13 06:18 C0kKDmkpPS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmOhVMDmlrxuPo.diag
[2025-10-13 06:18:44] -rw-r--r-- 1 boincer umatlas     21638 Oct 13 06:18 stderr.txt
[2025-10-13 06:18:44] HITS file was successfully produced:
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas 192458606 Oct 13 06:17 shared/HITS.pool.root.1
[2025-10-13 06:18:44]  *** Contents of shared directory: ***
[2025-10-13 06:18:44] total 402120
[2025-10-13 06:18:44] -rw-r--r-- 2 boincer umatlas 217692206 Oct 13 05:06 ATLAS.root_0
[2025-10-13 06:18:44] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 05:06 start_atlas.sh
[2025-10-13 06:18:44] -rw-r--r-- 2 boincer umatlas    569680 Oct 13 05:06 input.tar.gz
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas 192458606 Oct 13 06:17 HITS.pool.root.1
[2025-10-13 06:18:44] -rw------- 1 boincer umatlas   1024000 Oct 13 06:18 result.tar.gz
06:18:45 (28491): run_atlas exited; CPU time 46024.641205
06:18:45 (28491): called boinc_finish(0)

</stderr_txt>
]]>

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