Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:15:46 (2911086): wrapper (7.7.26015): starting
05:15:46 (2911086): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 05:15:46] Arguments: --nthreads 12
[2025-10-13 05:15:46] Threads: 12
[2025-10-13 05:15:46] Checking for CVMFS
[2025-10-13 05:15:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:15:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:15:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:15:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:15:47] 2.13.2.0 3683012 14035 143632 151654 1 188 38473166 40960000 5645 16776704 0 163287834 99.874 55113224 32597 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 05:15:47] CVMFS is ok
[2025-10-13 05:15:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:15:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:15:47] Further information can be found at the LHC@home message board.
[2025-10-13 05:15:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:15:47] Checking for apptainer binary...
[2025-10-13 05:15:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:15:47] Running /usr/bin/apptainer --version
[2025-10-13 05:15:47] apptainer version 1.4.3-1.el9
[2025-10-13 05:15:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:15:47] c8-7-4.aglt2.org
[2025-10-13 05:15:47] apptainer works
[2025-10-13 05:15:47] Set ATHENA_PROC_NUMBER=12
[2025-10-13 05:15:47] Set ATHENA_CORE_NUMBER=12
[2025-10-13 05:15:47] Starting ATLAS job with PandaID=6841070257
[2025-10-13 05:15:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:42:19]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:42:19] 2025-10-13 09:41:39,102 | INFO     | stage-out finished correctly
[2025-10-13 05:42:19] 2025-10-13 09:41:39,581 | INFO     | time since job start (1543s) is within the limit (172800.0s)
[2025-10-13 05:42:19] 2025-10-13 09:41:41,586 | INFO     | time since job start (1545s) is within the limit (172800.0s)
[2025-10-13 05:42:19] 2025-10-13 09:41:42,592 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:42:19] 2025-10-13 09:41:42,902 | WARNING  | process 2921216 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 05:42:19] 2025-10-13 09:41:42,902 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6841070257/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:42:19] 2025-10-13 09:41:42,903 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6841070257/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:42:19] 2025-10-13 09:41:42,903 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 05:42:19] 2025-10-13 09:41:42,903 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 05:42:19] 2025-10-13 09:41:42,904 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4159062 B
[2025-10-13 05:42:19] 2025-10-13 09:41:42,904 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15540 B
[2025-10-13 05:42:19] 2025-10-13 09:41:42,904 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 05:42:19] 2025-10-13 09:41:42,918 | INFO     | sufficient remaining disk space (167886454784 B)
[2025-10-13 05:42:19] 2025-10-13 09:41:42,919 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 05:42:19] 2025-10-13 09:41:42,919 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-6841070257: 4436800 B (within 2537553920 B limit)
[2025-10-13 05:42:19] 2025-10-13 09:41:42,919 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-6841070257/HITS.46676269._094062.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 05:42:19] 2025-10-13 09:41:42,920 | INFO     | total size of present files: 0 B (workdir size: 4436800 B)
[2025-10-13 05:42:19] 2025-10-13 09:41:42,920 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6841070257/HITS.46676269._094062.pool.root.1 since it does not exist
[2025-10-13 05:42:19] 2025-10-13 09:41:43,271 | INFO     | number of running child processes to parent process 2921216: 1
[2025-10-13 05:42:19] 2025-10-13 09:41:43,271 | INFO     | maximum number of monitored processes: 6
[2025-10-13 05:42:19] 2025-10-13 09:41:43,592 | INFO     | time since job start (1547s) is within the limit (172800.0s)
[2025-10-13 05:42:19] 2025-10-13 09:41:44,457 | INFO     | job 6841070257 has state=finished
[2025-10-13 05:42:19] 2025-10-13 09:41:44,458 | INFO     | preparing for final server update for job 6841070257 in state='finished'
[2025-10-13 05:42:19] 2025-10-13 09:41:44,458 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:42:19] 2025-10-13 09:41:44,458 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:42:19] 2025-10-13 09:41:44,458 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:42:19] 2025-10-13 09:41:44,458 | INFO     | job 6841070257 has finished - writing final server update
[2025-10-13 05:42:19] 2025-10-13 09:41:44,459 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:42:19] 2025-10-13 09:41:44,459 | INFO     | executing command: lscpu
[2025-10-13 05:42:19] 2025-10-13 09:41:44,521 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:42:19] 2025-10-13 09:41:45,598 | INFO     | time since job start (1549s) is within the limit (172800.0s)
[2025-10-13 05:42:19] 2025-10-13 09:41:45,774 | INFO     | monitor loop #118: job 0:6841070257 is in state 'finished'
[2025-10-13 05:42:19] 2025-10-13 09:41:45,775 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:42:19] 2025-10-13 09:41:47,005 | INFO     | PID=2914799 has CPU usage=10.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 05:42:19] 2025-10-13 09:41:47,005 | INFO     | .. there are 8 such processes running
[2025-10-13 05:42:19] 2025-10-13 09:41:47,603 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 05:42:19] 2025-10-13 09:41:47,607 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3563.8464843749925
[2025-10-13 05:42:19] 2025-10-13 09:41:47,615 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6841070257/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:42:19] 2025-10-13 09:41:47,615 | INFO     | extracted standard info from prmon json
[2025-10-13 05:42:19] 2025-10-13 09:41:47,615 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:42:19] 2025-10-13 09:41:47,615 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:42:19] 2025-10-13 09:41:47,615 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:42:19] 2025-10-13 09:41:47,615 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:42:19] 2025-10-13 09:41:47,616 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:42:19] 2025-10-13 09:41:47,616 | INFO     | sum of square deviations: 1802824.5
[2025-10-13 05:42:19] 2025-10-13 09:41:47,616 | INFO     | sum of deviations: 31007977.5
[2025-10-13 05:42:19] 2025-10-13 09:41:47,616 | INFO     | mean x: 1760347802.5
[2025-10-13 05:42:19] 2025-10-13 09:41:47,616 | INFO     | mean y: 2374325.9444444445
[2025-10-13 05:42:19] 2025-10-13 09:41:47,616 | INFO     | -- intersect: -30275018205.66052
[2025-10-13 05:42:19] 2025-10-13 09:41:47,616 | INFO     | intersect: -30275018205.66052
[2025-10-13 05:42:19] 2025-10-13 09:41:47,616 | INFO     | chi2: 0.0006290633238159265
[2025-10-13 05:42:19] 2025-10-13 09:41:47,616 | INFO     | -- intersect: -30275018205.66052
[2025-10-13 05:42:19] 2025-10-13 09:41:47,616 | INFO     | current memory leak: 17.20 B/s (using 18 data points, chi2=0.00)
[2025-10-13 05:42:19] 2025-10-13 09:41:47,616 | INFO     | could have reported an average CPU frequency of 3567 MHz (4 samples)
[2025-10-13 05:42:19] 2025-10-13 09:41:47,617 | INFO     | ..............................
[2025-10-13 05:42:19] 2025-10-13 09:41:47,617 | INFO     | . Timing measurements:
[2025-10-13 05:42:19] 2025-10-13 09:41:47,617 | INFO     | . get job = 0 s
[2025-10-13 05:42:19] 2025-10-13 09:41:47,617 | INFO     | . initial setup = 2 s
[2025-10-13 05:42:19] 2025-10-13 09:41:47,617 | INFO     | . payload setup = 4 s
[2025-10-13 05:42:19] 2025-10-13 09:41:47,617 | INFO     | . stage-in = 0 s
[2025-10-13 05:42:19] 2025-10-13 09:41:47,617 | INFO     | . payload execution = 1518 s
[2025-10-13 05:42:19] 2025-10-13 09:41:47,617 | INFO     | . stage-out = 0 s
[2025-10-13 05:42:19] 2025-10-13 09:41:47,617 | INFO     | . log creation = 0 s
[2025-10-13 05:42:19] 2025-10-13 09:41:47,617 | INFO     | ..............................
[2025-10-13 05:42:19] 2025-10-13 09:41:47,647 | INFO     | 
[2025-10-13 05:42:19] 2025-10-13 09:41:47,647 | INFO     | job summary report
[2025-10-13 05:42:19] 2025-10-13 09:41:47,647 | INFO     | --------------------------------------------------
[2025-10-13 05:42:19] 2025-10-13 09:41:47,647 | INFO     | PanDA job id: 6841070257
[2025-10-13 05:42:19] 2025-10-13 09:41:47,647 | INFO     | task id: 46676269
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | errors: (none)
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | pilot state: finished 
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | transexitcode: 0
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | exeerrorcode: 0
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | exeerrordiag: 
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | exitcode: 0
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | exitmsg: OK
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | cpuconsumptiontime: 15885 s
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | nevents: 400
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | neventsw: 0
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | pid: 2921216
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | pgrp: 2921216
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | corecount: 12
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | event service: False
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 11: 2349175, 1526: 2373988, 1527: 2373987, 1528: 2383169, 1532: 2383225, 1537: 2383447}
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | --------------------------------------------------
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | 
[2025-10-13 05:42:19] 2025-10-13 09:41:47,648 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 05:42:19] 2025-10-13 09:41:47,665 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,665 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,665 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,665 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,665 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,665 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,665 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,665 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,665 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,665 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,665 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,665 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,665 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,666 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,666 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,666 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,666 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,666 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:42:19] 2025-10-13 09:41:47,666 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,666 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:42:19] 2025-10-13 09:41:47,666 | INFO     | job 6841070257 has completed (purged errors)
[2025-10-13 05:42:19] 2025-10-13 09:41:47,666 | INFO     | overall cleanup function is called
[2025-10-13 05:42:19] 2025-10-13 09:41:48,674 | INFO     | --- collectZombieJob: --- 10, [2921216]
[2025-10-13 05:42:19] 2025-10-13 09:41:48,674 | INFO     | zombie collector waiting for pid 2921216
[2025-10-13 05:42:19] 2025-10-13 09:41:48,674 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:42:19] 2025-10-13 09:41:48,674 | INFO     | collected zombie processes
[2025-10-13 05:42:19] 2025-10-13 09:41:48,674 | INFO     | will attempt to kill all subprocesses of pid=2921216
[2025-10-13 05:42:19] 2025-10-13 09:41:48,989 | INFO     | process IDs to be killed: [2921216] (in reverse order)
[2025-10-13 05:42:19] 2025-10-13 09:41:49,101 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:42:19] 2025-10-13 09:41:49,102 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:42:19] 2025-10-13 09:41:49,115 | INFO     | did not find any defunct processes belonging to 2921216
[2025-10-13 05:42:19] 2025-10-13 09:41:49,123 | INFO     | did not find any defunct processes belonging to 2921216
[2025-10-13 05:42:19] 2025-10-13 09:41:49,123 | INFO     | ready for new job
[2025-10-13 05:42:19] 2025-10-13 09:41:49,124 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:42:19] 2025-10-13 09:41:49,124 | INFO     | ***************************************
[2025-10-13 05:42:19] 2025-10-13 09:41:49,124 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:42:19] 2025-10-13 09:41:49,124 | INFO     | ***************************************
[2025-10-13 05:42:19] 2025-10-13 09:41:49,124 | INFO     | 
[2025-10-13 05:42:19] 2025-10-13 09:41:49,140 | INFO     | architecture information:
[2025-10-13 05:42:19] 2025-10-13 09:41:49,140 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:42:19] 2025-10-13 09:41:49,154 | INFO     | cat /etc/os-release:
[2025-10-13 05:42:19] NAME="CentOS Linux"
[2025-10-13 05:42:19] VERSION="7 (Core)"
[2025-10-13 05:42:19] ID="centos"
[2025-10-13 05:42:19] ID_LIKE="rhel fedora"
[2025-10-13 05:42:19] VERSION_ID="7"
[2025-10-13 05:42:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:42:19] ANSI_COLOR="0;31"
[2025-10-13 05:42:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:42:19] HOME_URL="https://www.centos.org/"
[2025-10-13 05:42:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:42:19] 
[2025-10-13 05:42:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:42:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:42:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:42:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:42:19] 
[2025-10-13 05:42:19] 2025-10-13 09:41:49,154 | INFO     | ***************************************
[2025-10-13 05:42:19] 2025-10-13 09:41:49,656 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 05:42:19] 2025-10-13 09:41:49,668 | INFO     | sufficient remaining disk space (167881211904 B)
[2025-10-13 05:42:19] 2025-10-13 09:41:49,668 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:42:19] 2025-10-13 09:41:49,669 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:42:19] 2025-10-13 09:41:49,669 | INFO     | update_server=False
[2025-10-13 05:42:19] 2025-10-13 09:41:49,669 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:42:19] 2025-10-13 09:41:49,669 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:42:19] 2025-10-13 09:41:49,669 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:42:19] 2025-10-13 09:41:49,669 | INFO     | aborting loop
[2025-10-13 05:42:19] 2025-10-13 09:41:50,602 | INFO     | all data control threads have been joined
[2025-10-13 05:42:19] 2025-10-13 09:41:50,603 | INFO     | all job control threads have been joined
[2025-10-13 05:42:19] 2025-10-13 09:41:50,674 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:50,675 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:50,886 | INFO     | [job] validate thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:51,084 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:51,122 | INFO     | all payload control threads have been joined
[2025-10-13 05:42:19] 2025-10-13 09:41:51,162 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:51,281 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:51,546 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:51,606 | INFO     | [data] control thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:51,607 | INFO     | [job] control thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:51,675 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:51,900 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:51,931 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:52,127 | INFO     | [payload] control thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:52,655 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:42:19] 2025-10-13 09:41:53,153 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:42:19] 2025-10-13 09:41:53,660 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:57,159 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:41:57,576 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:42:19] 2025-10-13 09:42:00,174 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:42:19] 2025-10-13 09:42:01,180 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:42:19] 2025-10-13 09:42:02,033 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139655113656128)>', '<ExcThread(monitor, started 139654342895360)>']
[2025-10-13 05:42:19] 2025-10-13 09:42:07,058 | INFO     | all workflow threads have been joined
[2025-10-13 05:42:19] 2025-10-13 09:42:07,058 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:42:19] 2025-10-13 09:42:07,059 | INFO     | traces error code: 0
[2025-10-13 05:42:19] 2025-10-13 09:42:07,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:42:19] 2025-10-13 09:42:19,507 | INFO     | PID=2914799 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:42:19] 2025-10-13 09:42:19,507 | INFO     | .. there are 8 such processes running
[2025-10-13 05:42:19] 2025-10-13 09:42:19,507 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:42:19] 2025-10-13 09:42:19,507 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:42:19] 2025-10-13 09:42:19,508 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:42:19] 2025-10-13 09:42:19,508 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:42:19] 2025-10-13 09:42:19,508 | INFO     | [monitor] control thread has ended
[2025-10-13 05:42:19] 2025-10-13 09:42:19,585 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:42:19] 2025-10-13 09:42:19,588 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:42:19] 2025-10-13 09:42:19,590 [wrapper] pilotpid: 2914799
[2025-10-13 05:42:19] 2025-10-13 09:42:19,593 [wrapper] Pilot exit status: 0
[2025-10-13 05:42:19] 2025-10-13 09:42:19,602 [wrapper] pandaids: 6841070257
[2025-10-13 05:42:19] 2025-10-13 09:42:19,682 [wrapper] cleanup supervisor_pilot 3020648 2914800
[2025-10-13 05:42:19] 2025-10-13 09:42:19,685 [wrapper] Test setup, not cleaning
[2025-10-13 05:42:19] 2025-10-13 09:42:19,687 [wrapper] apfmon messages muted
[2025-10-13 05:42:19] 2025-10-13 09:42:19,689 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:42:19] 2025-10-13 09:42:19,691 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:42:19]  *** Error codes and diagnostics ***
[2025-10-13 05:42:19]     "exeErrorCode": 0,
[2025-10-13 05:42:19]     "exeErrorDiag": "",
[2025-10-13 05:42:19]     "pilotErrorCode": 0,
[2025-10-13 05:42:19]     "pilotErrorDiag": "",
[2025-10-13 05:42:19]  *** Listing of results directory ***
[2025-10-13 05:42:19] total 410900
[2025-10-13 05:42:19] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 21:18 pilot3.tar.gz
[2025-10-13 05:42:19] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 21:23 queuedata.json
[2025-10-13 05:42:19] -rwx------. 1 boincer umatlas     36292 Oct 12 21:24 runpilot2-wrapper.sh
[2025-10-13 05:42:19] -rw-r--r--. 1 boincer umatlas       100 Oct 13 05:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:42:19] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 05:15 run_atlas
[2025-10-13 05:42:19] -rw-r--r--. 1 boincer umatlas       105 Oct 13 05:15 job.xml
[2025-10-13 05:42:19] -rw-r--r--. 2 boincer umatlas 220261884 Oct 13 05:15 EVNT.46676267._004729.pool.root.1
[2025-10-13 05:42:19] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 05:15 start_atlas.sh
[2025-10-13 05:42:19] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 05:15 shared
[2025-10-13 05:42:19] -rw-r--r--. 2 boincer umatlas    569685 Oct 13 05:15 input.tar.gz
[2025-10-13 05:42:19] -rw-r--r--. 1 boincer umatlas         0 Oct 13 05:15 boinc_lockfile
[2025-10-13 05:42:19] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 05:15 pandaJob.out
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas    972857 Oct 13 05:15 agis_schedconf.cvmfs.json
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas   1560580 Oct 13 05:15 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:42:19] drwx------. 5 boincer umatlas      4096 Oct 13 05:15 pilot3
[2025-10-13 05:42:19] -rw-r--r--. 1 boincer umatlas      7164 Oct 13 05:36 init_data.xml
[2025-10-13 05:42:19] -rw-r--r--. 1 boincer umatlas       529 Oct 13 05:41 boinc_task_state.xml
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas 195398673 Oct 13 05:41 HITS.46676269._094062.pool.root.1
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas        95 Oct 13 05:41 pilot_heartbeat.json
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas      1042 Oct 13 05:41 memory_monitor_summary.json
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas    337423 Oct 13 05:41 log.46676269._094062.job.log.tgz.1
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas      7769 Oct 13 05:41 heartbeat.json
[2025-10-13 05:42:19] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 05:42 boinc_mmap_file
[2025-10-13 05:42:19] -rw-r--r--. 1 boincer umatlas        27 Oct 13 05:42 wrapper_checkpoint.txt
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas       822 Oct 13 05:42 pilotlog.txt
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas    264193 Oct 13 05:42 log.46676269._094062.job.log.1
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas       357 Oct 13 05:42 output.list
[2025-10-13 05:42:19] -rw-r--r--. 1 boincer umatlas       620 Oct 13 05:42 runtime_log
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas    624640 Oct 13 05:42 result.tar.gz
[2025-10-13 05:42:19] -rw-r--r--. 1 boincer umatlas      8695 Oct 13 05:42 runtime_log.err
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas       648 Oct 13 05:42 hPaKDmXTMS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2LmNDmR0dfOn.diag
[2025-10-13 05:42:19] -rw-r--r--. 1 boincer umatlas     22475 Oct 13 05:42 stderr.txt
[2025-10-13 05:42:19] HITS file was successfully produced:
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas 195398673 Oct 13 05:41 shared/HITS.pool.root.1
[2025-10-13 05:42:19]  *** Contents of shared directory: ***
[2025-10-13 05:42:19] total 407112
[2025-10-13 05:42:19] -rw-r--r--. 2 boincer umatlas 220261884 Oct 13 05:15 ATLAS.root_0
[2025-10-13 05:42:19] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 05:15 start_atlas.sh
[2025-10-13 05:42:19] -rw-r--r--. 2 boincer umatlas    569685 Oct 13 05:15 input.tar.gz
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas 195398673 Oct 13 05:41 HITS.pool.root.1
[2025-10-13 05:42:19] -rw-------. 1 boincer umatlas    624640 Oct 13 05:42 result.tar.gz
05:42:21 (2911086): run_atlas exited; CPU time 15911.765326
05:42:21 (2911086): called boinc_finish(0)

</stderr_txt>
]]>

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