Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:33:14 (200233): wrapper (7.7.26015): starting
01:33:14 (200233): wrapper: running run_atlas (--nthreads 6)
[2025-10-14 01:33:14] Arguments: --nthreads 6
[2025-10-14 01:33:14] Threads: 6
[2025-10-14 01:33:14] Checking for CVMFS
[2025-10-14 01:33:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 01:33:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 01:33:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 01:33:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 01:33:15] 2.12.7.0 249871 7556 96332 151667 1 188 14089873 20971521 929 130560 0 12885771 99.995 260878 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-14 01:33:15] CVMFS is ok
[2025-10-14 01:33:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 01:33:15] Checking for apptainer binary...
[2025-10-14 01:33:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 01:33:15] Running /usr/bin/apptainer --version
[2025-10-14 01:33:15] apptainer version 1.4.0-1.el9
[2025-10-14 01:33:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 01:33:15] testio005
[2025-10-14 01:33:15] apptainer works
[2025-10-14 01:33:15] Set ATHENA_PROC_NUMBER=6
[2025-10-14 01:33:15] Set ATHENA_CORE_NUMBER=6
[2025-10-14 01:33:15] Starting ATLAS job with PandaID=6841474838
[2025-10-14 01:33:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 03:05:41]  *** The last 200 lines of the pilot log: ***
[2025-10-14 03:05:41] 2025-10-13 18:04:54,534 | INFO     | .. there are 2 such processes running
[2025-10-14 03:05:41] 2025-10-13 18:04:54,625 | INFO     | monitor loop #423: job 0:6841474838 is in state 'finished'
[2025-10-14 03:05:41] 2025-10-13 18:04:54,625 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:05:41] 2025-10-13 18:04:55,534 | INFO     | time since job start (5487s) is within the limit (172800.0s)
[2025-10-14 03:05:41] 2025-10-13 18:04:57,128 | INFO     | monitor loop #424: job 0:6841474838 is in state 'finished'
[2025-10-14 03:05:41] 2025-10-13 18:04:57,128 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:05:41] 2025-10-13 18:04:57,539 | INFO     | time since job start (5489s) is within the limit (172800.0s)
[2025-10-14 03:05:41] 2025-10-13 18:04:59,545 | INFO     | time since job start (5491s) is within the limit (172800.0s)
[2025-10-14 03:05:41] 2025-10-13 18:04:59,631 | INFO     | monitor loop #425: job 0:6841474838 is in state 'finished'
[2025-10-14 03:05:41] 2025-10-13 18:04:59,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:05:41] 2025-10-13 18:05:01,546 | INFO     | time since job start (5493s) is within the limit (172800.0s)
[2025-10-14 03:05:41] 2025-10-13 18:05:02,134 | INFO     | monitor loop #426: job 0:6841474838 is in state 'finished'
[2025-10-14 03:05:41] 2025-10-13 18:05:02,135 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:05:41] 2025-10-13 18:05:03,547 | INFO     | time since job start (5495s) is within the limit (172800.0s)
[2025-10-14 03:05:41] 2025-10-13 18:05:04,637 | INFO     | monitor loop #427: job 0:6841474838 is in state 'finished'
[2025-10-14 03:05:41] 2025-10-13 18:05:04,638 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:05:41] 2025-10-13 18:05:05,553 | INFO     | time since job start (5497s) is within the limit (172800.0s)
[2025-10-14 03:05:41] 2025-10-13 18:05:07,141 | INFO     | monitor loop #428: job 0:6841474838 is in state 'finished'
[2025-10-14 03:05:41] 2025-10-13 18:05:07,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:05:41] 2025-10-13 18:05:07,558 | INFO     | time since job start (5499s) is within the limit (172800.0s)
[2025-10-14 03:05:41] 2025-10-13 18:05:09,564 | INFO     | time since job start (5501s) is within the limit (172800.0s)
[2025-10-14 03:05:41] 2025-10-13 18:05:09,644 | INFO     | monitor loop #429: job 0:6841474838 is in state 'finished'
[2025-10-14 03:05:41] 2025-10-13 18:05:09,644 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:05:41] 2025-10-13 18:05:11,570 | INFO     | time since job start (5503s) is within the limit (172800.0s)
[2025-10-14 03:05:41] 2025-10-13 18:05:12,147 | INFO     | monitor loop #430: job 0:6841474838 is in state 'finished'
[2025-10-14 03:05:41] 2025-10-13 18:05:12,147 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:05:41] 2025-10-13 18:05:13,575 | INFO     | time since job start (5505s) is within the limit (172800.0s)
[2025-10-14 03:05:41] 2025-10-13 18:05:14,649 | INFO     | monitor loop #431: job 0:6841474838 is in state 'finished'
[2025-10-14 03:05:41] 2025-10-13 18:05:14,649 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:05:41] 2025-10-13 18:05:15,576 | INFO     | time since job start (5507s) is within the limit (172800.0s)
[2025-10-14 03:05:41] 2025-10-13 18:05:16,692 | INFO     | PID=204031 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 03:05:41] 2025-10-13 18:05:16,692 | INFO     | .. there are 2 such processes running
[2025-10-14 03:05:41] 2025-10-13 18:05:17,152 | INFO     | monitor loop #432: job 0:6841474838 is in state 'finished'
[2025-10-14 03:05:41] 2025-10-13 18:05:17,152 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:05:41] 2025-10-13 18:05:17,693 | INFO     | time since job start (5509s) is within the limit (172800.0s)
[2025-10-14 03:05:41] 2025-10-13 18:05:19,643 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 03:05:41] 2025-10-13 18:05:19,645 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3314.3636249999995
[2025-10-14 03:05:41] 2025-10-13 18:05:19,648 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6841474838/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 03:05:41] 2025-10-13 18:05:19,648 | INFO     | extracted standard info from prmon json
[2025-10-14 03:05:41] 2025-10-13 18:05:19,648 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 03:05:41] 2025-10-13 18:05:19,648 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 03:05:41] 2025-10-13 18:05:19,648 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 03:05:41] 2025-10-13 18:05:19,648 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 03:05:41] 2025-10-13 18:05:19,649 | INFO     | fitting pss+swap vs Time
[2025-10-14 03:05:41] 2025-10-13 18:05:19,650 | INFO     | sum of square deviations: 170944600.5
[2025-10-14 03:05:41] 2025-10-13 18:05:19,650 | INFO     | sum of deviations: -6842919000.000002
[2025-10-14 03:05:41] 2025-10-13 18:05:19,650 | INFO     | mean x: 1760376007.5
[2025-10-14 03:05:41] 2025-10-13 18:05:19,650 | INFO     | mean y: 2530478.6829268294
[2025-10-14 03:05:41] 2025-10-13 18:05:19,650 | INFO     | -- intersect: 70470450457.6231
[2025-10-14 03:05:41] 2025-10-13 18:05:19,650 | INFO     | intersect: 70470450457.6231
[2025-10-14 03:05:41] 2025-10-13 18:05:19,650 | INFO     | chi2: 0.07049511786640487
[2025-10-14 03:05:41] 2025-10-13 18:05:19,650 | INFO     | -- intersect: 70470450457.6231
[2025-10-14 03:05:41] 2025-10-13 18:05:19,650 | INFO     | current memory leak: -40.03 B/s (using 82 data points, chi2=0.07)
[2025-10-14 03:05:41] 2025-10-13 18:05:19,651 | INFO     | could have reported an average CPU frequency of 3327 MHz (6 samples)
[2025-10-14 03:05:41] 2025-10-13 18:05:19,651 | INFO     | ..............................
[2025-10-14 03:05:41] 2025-10-13 18:05:19,651 | INFO     | . Timing measurements:
[2025-10-14 03:05:41] 2025-10-13 18:05:19,651 | INFO     | . get job = 0 s
[2025-10-14 03:05:41] 2025-10-13 18:05:19,651 | INFO     | . initial setup = 7 s
[2025-10-14 03:05:41] 2025-10-13 18:05:19,651 | INFO     | . payload setup = 4 s
[2025-10-14 03:05:41] 2025-10-13 18:05:19,651 | INFO     | . stage-in = 0 s
[2025-10-14 03:05:41] 2025-10-13 18:05:19,651 | INFO     | . payload execution = 5407 s
[2025-10-14 03:05:41] 2025-10-13 18:05:19,651 | INFO     | . stage-out = 0 s
[2025-10-14 03:05:41] 2025-10-13 18:05:19,651 | INFO     | . log creation = 0 s
[2025-10-14 03:05:41] 2025-10-13 18:05:19,651 | INFO     | ..............................
[2025-10-14 03:05:41] 2025-10-13 18:05:19,703 | INFO     | time since job start (5511s) is within the limit (172800.0s)
[2025-10-14 03:05:41] 2025-10-13 18:05:19,834 | INFO     | 
[2025-10-14 03:05:41] 2025-10-13 18:05:19,834 | INFO     | job summary report
[2025-10-14 03:05:41] 2025-10-13 18:05:19,834 | INFO     | --------------------------------------------------
[2025-10-14 03:05:41] 2025-10-13 18:05:19,835 | INFO     | PanDA job id: 6841474838
[2025-10-14 03:05:41] 2025-10-13 18:05:19,835 | INFO     | task id: 46676269
[2025-10-14 03:05:41] 2025-10-13 18:05:19,835 | INFO     | errors: (none)
[2025-10-14 03:05:41] 2025-10-13 18:05:19,835 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 03:05:41] 2025-10-13 18:05:19,835 | INFO     | pilot state: finished 
[2025-10-14 03:05:41] 2025-10-13 18:05:19,835 | INFO     | transexitcode: 0
[2025-10-14 03:05:41] 2025-10-13 18:05:19,835 | INFO     | exeerrorcode: 0
[2025-10-14 03:05:41] 2025-10-13 18:05:19,835 | INFO     | exeerrordiag: 
[2025-10-14 03:05:41] 2025-10-13 18:05:19,835 | INFO     | exitcode: 0
[2025-10-14 03:05:41] 2025-10-13 18:05:19,835 | INFO     | exitmsg: OK
[2025-10-14 03:05:41] 2025-10-13 18:05:19,835 | INFO     | cpuconsumptiontime: 29719 s
[2025-10-14 03:05:41] 2025-10-13 18:05:19,835 | INFO     | nevents: 400
[2025-10-14 03:05:41] 2025-10-13 18:05:19,836 | INFO     | neventsw: 0
[2025-10-14 03:05:41] 2025-10-13 18:05:19,836 | INFO     | pid: 210797
[2025-10-14 03:05:41] 2025-10-13 18:05:19,836 | INFO     | pgrp: 210797
[2025-10-14 03:05:41] 2025-10-13 18:05:19,836 | INFO     | corecount: 6
[2025-10-14 03:05:41] 2025-10-13 18:05:19,836 | INFO     | event service: False
[2025-10-14 03:05:41] 2025-10-13 18:05:19,836 | INFO     | sizes: {0: 2348807, 3: 2349069, 11: 2349097, 5416: 2375667, 5417: 2384665, 5418: 2384721, 5496: 2385043}
[2025-10-14 03:05:41] 2025-10-13 18:05:19,836 | INFO     | --------------------------------------------------
[2025-10-14 03:05:41] 2025-10-13 18:05:19,836 | INFO     | 
[2025-10-14 03:05:41] 2025-10-13 18:05:19,836 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-14 03:05:41] 2025-10-13 18:05:19,851 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,851 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,851 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,852 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,852 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,852 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,852 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,852 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,852 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,852 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,852 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,852 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,852 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,853 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,853 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,853 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,853 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,853 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 03:05:41] 2025-10-13 18:05:19,853 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,853 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 03:05:41] 2025-10-13 18:05:19,853 | INFO     | job 6841474838 has completed (purged errors)
[2025-10-14 03:05:41] 2025-10-13 18:05:19,853 | INFO     | overall cleanup function is called
[2025-10-14 03:05:41] 2025-10-13 18:05:20,860 | INFO     | --- collectZombieJob: --- 10, [210797]
[2025-10-14 03:05:41] 2025-10-13 18:05:20,861 | INFO     | zombie collector waiting for pid 210797
[2025-10-14 03:05:41] 2025-10-13 18:05:20,861 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 03:05:41] 2025-10-13 18:05:20,861 | INFO     | collected zombie processes
[2025-10-14 03:05:41] 2025-10-13 18:05:20,861 | INFO     | will attempt to kill all subprocesses of pid=210797
[2025-10-14 03:05:41] 2025-10-13 18:05:20,948 | INFO     | process IDs to be killed: [210797] (in reverse order)
[2025-10-14 03:05:41] 2025-10-13 18:05:20,980 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 03:05:41] 2025-10-13 18:05:20,981 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 03:05:41] 2025-10-13 18:05:20,984 | INFO     | did not find any defunct processes belonging to 210797
[2025-10-14 03:05:41] 2025-10-13 18:05:20,988 | INFO     | did not find any defunct processes belonging to 210797
[2025-10-14 03:05:41] 2025-10-13 18:05:20,988 | INFO     | ready for new job
[2025-10-14 03:05:41] 2025-10-13 18:05:20,988 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 03:05:41] 2025-10-13 18:05:20,989 | INFO     | ***************************************
[2025-10-14 03:05:41] 2025-10-13 18:05:20,990 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 03:05:41] 2025-10-13 18:05:20,990 | INFO     | ***************************************
[2025-10-14 03:05:41] 2025-10-13 18:05:20,990 | INFO     | 
[2025-10-14 03:05:41] 2025-10-13 18:05:20,991 | INFO     | architecture information:
[2025-10-14 03:05:41] 2025-10-13 18:05:20,991 | INFO     | executing command: cat /etc/os-release
[2025-10-14 03:05:41] 2025-10-13 18:05:21,001 | INFO     | cat /etc/os-release:
[2025-10-14 03:05:41] NAME="CentOS Linux"
[2025-10-14 03:05:41] VERSION="7 (Core)"
[2025-10-14 03:05:41] ID="centos"
[2025-10-14 03:05:41] ID_LIKE="rhel fedora"
[2025-10-14 03:05:41] VERSION_ID="7"
[2025-10-14 03:05:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 03:05:41] ANSI_COLOR="0;31"
[2025-10-14 03:05:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 03:05:41] HOME_URL="https://www.centos.org/"
[2025-10-14 03:05:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 03:05:41] 
[2025-10-14 03:05:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 03:05:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 03:05:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 03:05:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 03:05:41] 
[2025-10-14 03:05:41] 2025-10-13 18:05:21,002 | INFO     | ***************************************
[2025-10-14 03:05:41] 2025-10-13 18:05:21,504 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-14 03:05:41] 2025-10-13 18:05:21,514 | INFO     | sufficient remaining disk space (98724478976 B)
[2025-10-14 03:05:41] 2025-10-13 18:05:21,515 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 03:05:41] 2025-10-13 18:05:21,515 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 03:05:41] 2025-10-13 18:05:21,515 | INFO     | update_server=False
[2025-10-14 03:05:41] 2025-10-13 18:05:21,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 03:05:41] 2025-10-13 18:05:21,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 03:05:41] 2025-10-13 18:05:21,515 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 03:05:41] 2025-10-13 18:05:21,515 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-14 03:05:41] 2025-10-13 18:05:21,515 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 03:05:41] 2025-10-13 18:05:21,516 | INFO     | aborting loop
[2025-10-14 03:05:41] 2025-10-13 18:05:21,516 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 03:05:41] 2025-10-13 18:05:21,516 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 03:05:41] 2025-10-13 18:05:21,516 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 03:05:41] 2025-10-13 18:05:21,754 | INFO     | all data control threads have been joined
[2025-10-14 03:05:41] 2025-10-13 18:05:22,059 | INFO     | all job control threads have been joined
[2025-10-14 03:05:41] 2025-10-13 18:05:22,519 | INFO     | [job] retrieve thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:22,521 | INFO     | [job] queue monitor thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:22,521 | INFO     | [job] job monitor thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:22,527 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:22,575 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:22,757 | INFO     | [data] control thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:22,781 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:22,888 | INFO     | all payload control threads have been joined
[2025-10-14 03:05:41] 2025-10-13 18:05:23,065 | INFO     | [job] control thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:23,222 | INFO     | [data] copytool_in thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:23,297 | INFO     | [payload] validate_post thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:23,521 | INFO     | [data] copytool_out thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:23,525 | INFO     | [payload] failed_post thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:23,843 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 03:05:41] 2025-10-13 18:05:23,892 | INFO     | [payload] control thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:23,898 | INFO     | [job] validate thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:27,849 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:32,292 | INFO     | job.realtimelogging is not enabled
[2025-10-14 03:05:41] 2025-10-13 18:05:33,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 03:05:41] 2025-10-13 18:05:36,364 | INFO     | [monitor] cgroup control has ended
[2025-10-14 03:05:41] 2025-10-13 18:05:36,817 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140591774857024)>', '<ExcThread(monitor, started 140591409108736)>']
[2025-10-14 03:05:41] 2025-10-13 18:05:37,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 03:05:41] 2025-10-13 18:05:37,595 | INFO     | [monitor] control thread has ended
[2025-10-14 03:05:41] 2025-10-13 18:05:41,822 | INFO     | all workflow threads have been joined
[2025-10-14 03:05:41] 2025-10-13 18:05:41,822 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 03:05:41] 2025-10-13 18:05:41,823 | INFO     | traces error code: 0
[2025-10-14 03:05:41] 2025-10-13 18:05:41,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 03:05:41] 2025-10-13 18:05:41,898 [wrapper] ==== pilot stdout END ====
[2025-10-14 03:05:41] 2025-10-13 18:05:41,900 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 03:05:41] 2025-10-13 18:05:41,903 [wrapper] pilotpid: 204031
[2025-10-14 03:05:41] 2025-10-13 18:05:41,905 [wrapper] Pilot exit status: 0
[2025-10-14 03:05:41] 2025-10-13 18:05:41,913 [wrapper] pandaids: 6841474838
[2025-10-14 03:05:41] 2025-10-13 18:05:41,943 [wrapper] cleanup supervisor_pilot  247846 204032
[2025-10-14 03:05:41] 2025-10-13 18:05:41,946 [wrapper] Test setup, not cleaning
[2025-10-14 03:05:41] 2025-10-13 18:05:41,948 [wrapper] apfmon messages muted
[2025-10-14 03:05:41] 2025-10-13 18:05:41,950 [wrapper] ==== wrapper stdout END ====
[2025-10-14 03:05:41] 2025-10-13 18:05:41,952 [wrapper] ==== wrapper stderr END ====
[2025-10-14 03:05:41]  *** Error codes and diagnostics ***
[2025-10-14 03:05:41]     "exeErrorCode": 0,
[2025-10-14 03:05:41]     "exeErrorDiag": "",
[2025-10-14 03:05:41]     "pilotErrorCode": 0,
[2025-10-14 03:05:41]     "pilotErrorDiag": "",
[2025-10-14 03:05:41]  *** Listing of results directory ***
[2025-10-14 03:05:41] total 416024
[2025-10-14 03:05:41] -rw-r--r--. 1 boinc boinc    557409 Oct 13 11:00 pilot3.tar.gz
[2025-10-14 03:05:41] -rw-r--r--. 1 boinc boinc      5112 Oct 13 11:44 queuedata.json
[2025-10-14 03:05:41] -rwx------. 1 boinc boinc     36292 Oct 13 11:45 runpilot2-wrapper.sh
[2025-10-14 03:05:41] -rw-r--r--. 1 boinc boinc       100 Oct 14 01:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 03:05:41] -rwxr-xr-x. 1 boinc boinc      7986 Oct 14 01:33 run_atlas
[2025-10-14 03:05:41] -rw-r--r--. 1 boinc boinc       105 Oct 14 01:33 job.xml
[2025-10-14 03:05:41] -rw-r--r--. 2 boinc boinc 222062588 Oct 14 01:33 EVNT.46676267._002615.pool.root.1
[2025-10-14 03:05:41] -rw-r--r--. 2 boinc boinc     15120 Oct 14 01:33 start_atlas.sh
[2025-10-14 03:05:41] drwxrwx--x. 2 boinc boinc        68 Oct 14 01:33 shared
[2025-10-14 03:05:41] -rw-r--r--. 2 boinc boinc    569690 Oct 14 01:33 input.tar.gz
[2025-10-14 03:05:41] -rw-r--r--. 1 boinc boinc      9362 Oct 14 01:33 init_data.xml
[2025-10-14 03:05:41] -rw-r--r--. 1 boinc boinc         0 Oct 14 01:33 boinc_lockfile
[2025-10-14 03:05:41] -rw-r--r--. 1 boinc boinc      2550 Oct 14 01:33 pandaJob.out
[2025-10-14 03:05:41] -rw-------. 1 boinc boinc    972783 Oct 14 01:33 agis_schedconf.cvmfs.json
[2025-10-14 03:05:41] -rw-------. 1 boinc boinc   1560580 Oct 14 01:33 agis_ddmendpoints.agis.ALL.json
[2025-10-14 03:05:41] drwx------. 5 boinc boinc      4096 Oct 14 01:33 pilot3
[2025-10-14 03:05:41] -rw-r--r--. 1 boinc boinc       529 Oct 14 03:03 boinc_task_state.xml
[2025-10-14 03:05:41] -rw-------. 1 boinc boinc 197858960 Oct 14 03:03 HITS.46676269._095198.pool.root.1
[2025-10-14 03:05:41] -rw-------. 1 boinc boinc      1016 Oct 14 03:03 memory_monitor_summary.json
[2025-10-14 03:05:41] -rw-------. 1 boinc boinc    295002 Oct 14 03:04 log.46676269._095198.job.log.tgz.1
[2025-10-14 03:05:41] -rw-------. 1 boinc boinc        95 Oct 14 03:05 pilot_heartbeat.json
[2025-10-14 03:05:41] -rw-------. 1 boinc boinc      7749 Oct 14 03:05 heartbeat.json
[2025-10-14 03:05:41] -rw-r--r--. 1 boinc boinc      8192 Oct 14 03:05 boinc_mmap_file
[2025-10-14 03:05:41] -rw-r--r--. 1 boinc boinc        27 Oct 14 03:05 wrapper_checkpoint.txt
[2025-10-14 03:05:41] -rw-------. 1 boinc boinc      4624 Oct 14 03:05 pilotlog.txt
[2025-10-14 03:05:41] -rw-------. 1 boinc boinc    802315 Oct 14 03:05 log.46676269._095198.job.log.1
[2025-10-14 03:05:41] -rw-------. 1 boinc boinc       357 Oct 14 03:05 output.list
[2025-10-14 03:05:41] -rw-r--r--. 1 boinc boinc       620 Oct 14 03:05 runtime_log
[2025-10-14 03:05:41] -rw-------. 1 boinc boinc   1116160 Oct 14 03:05 result.tar.gz
[2025-10-14 03:05:41] -rw-r--r--. 1 boinc boinc      8661 Oct 14 03:05 runtime_log.err
[2025-10-14 03:05:41] -rw-------. 1 boinc boinc       642 Oct 14 03:05 JRsNDm7jNS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3WmNDmZm48Cn.diag
[2025-10-14 03:05:41] -rw-r--r--. 1 boinc boinc     21847 Oct 14 03:05 stderr.txt
[2025-10-14 03:05:42] HITS file was successfully produced:
[2025-10-14 03:05:42] -rw-------. 1 boinc boinc 197858960 Oct 14 03:03 shared/HITS.pool.root.1
[2025-10-14 03:05:42]  *** Contents of shared directory: ***
[2025-10-14 03:05:42] total 411752
[2025-10-14 03:05:42] -rw-r--r--. 2 boinc boinc 222062588 Oct 14 01:33 ATLAS.root_0
[2025-10-14 03:05:42] -rw-r--r--. 2 boinc boinc     15120 Oct 14 01:33 start_atlas.sh
[2025-10-14 03:05:42] -rw-r--r--. 2 boinc boinc    569690 Oct 14 01:33 input.tar.gz
[2025-10-14 03:05:42] -rw-------. 1 boinc boinc 197858960 Oct 14 03:03 HITS.pool.root.1
[2025-10-14 03:05:42] -rw-------. 1 boinc boinc   1116160 Oct 14 03:05 result.tar.gz
03:05:43 (200233): run_atlas exited; CPU time 29777.997161
03:05:43 (200233): called boinc_finish(0)

</stderr_txt>
]]>

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