Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:22:07 (3767694): wrapper (7.7.26015): starting
06:22:07 (3767694): wrapper: running run_atlas (--nthreads 11)
[2025-10-13 06:22:07] Arguments: --nthreads 11
[2025-10-13 06:22:07] Threads: 11
[2025-10-13 06:22:07] Checking for CVMFS
[2025-10-13 06:22:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:22:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:22:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:22:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:22:07] 2.13.2.0 79137 136216 562520 151658 3 286 32124542 40960001 36230 16776704 0 477700857 99.819 224618128 32266 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 06:22:07] CVMFS is ok
[2025-10-13 06:22:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:22:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:22:07] Further information can be found at the LHC@home message board.
[2025-10-13 06:22:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:22:07] Checking for apptainer binary...
[2025-10-13 06:22:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:22:07] Running /usr/bin/apptainer --version
[2025-10-13 06:22:07] apptainer version 1.4.3-1.el9
[2025-10-13 06:22:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:22:08] c8-7-6.aglt2.org
[2025-10-13 06:22:08] apptainer works
[2025-10-13 06:22:08] Set ATHENA_PROC_NUMBER=11
[2025-10-13 06:22:08] Set ATHENA_CORE_NUMBER=11
[2025-10-13 06:22:08] Starting ATLAS job with PandaID=6840854019
[2025-10-13 06:22:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:25:32]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:25:32] 2025-10-13 11:24:35,823 | INFO     |  -- lfn=log.46676269._091589.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 07:25:32] 2025-10-13 11:24:35,823 | INFO     | stage-out finished correctly
[2025-10-13 07:25:32] 2025-10-13 11:24:37,101 | INFO     | PID=3774803 has CPU usage=14.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 07:25:32] 2025-10-13 11:24:37,101 | INFO     | .. there are 57 such processes running
[2025-10-13 07:25:32] 2025-10-13 11:24:37,144 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 07:25:32] 2025-10-13 11:24:37,664 | INFO     | monitor loop #235: job 0:6840854019 is in state 'finished'
[2025-10-13 07:25:32] 2025-10-13 11:24:37,664 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:25:32] 2025-10-13 11:24:38,102 | INFO     | time since job start (3739s) is within the limit (172800.0s)
[2025-10-13 07:25:32] 2025-10-13 11:24:39,446 | INFO     | job 6840854019 has state=finished
[2025-10-13 07:25:32] 2025-10-13 11:24:39,446 | INFO     | preparing for final server update for job 6840854019 in state='finished'
[2025-10-13 07:25:32] 2025-10-13 11:24:39,447 | INFO     | this job has now completed (state=finished)
[2025-10-13 07:25:32] 2025-10-13 11:24:39,447 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 07:25:32] 2025-10-13 11:24:39,447 | INFO     | log transfer has been attempted: DONE
[2025-10-13 07:25:32] 2025-10-13 11:24:39,447 | INFO     | job 6840854019 has finished - writing final server update
[2025-10-13 07:25:32] 2025-10-13 11:24:39,447 | INFO     | total number of processed events: 400 (read)
[2025-10-13 07:25:32] 2025-10-13 11:24:39,447 | INFO     | executing command: lscpu
[2025-10-13 07:25:32] 2025-10-13 11:24:39,514 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 07:25:32] 2025-10-13 11:24:40,109 | INFO     | time since job start (3741s) is within the limit (172800.0s)
[2025-10-13 07:25:32] 2025-10-13 11:24:40,169 | INFO     | monitor loop #236: job 0:6840854019 is in state 'finished'
[2025-10-13 07:25:32] 2025-10-13 11:24:40,169 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:25:32] 2025-10-13 11:24:42,116 | INFO     | time since job start (3743s) is within the limit (172800.0s)
[2025-10-13 07:25:32] 2025-10-13 11:24:42,674 | INFO     | monitor loop #237: job 0:6840854019 is in state 'finished'
[2025-10-13 07:25:32] 2025-10-13 11:24:42,674 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:25:32] 2025-10-13 11:24:44,141 | INFO     | time since job start (3745s) is within the limit (172800.0s)
[2025-10-13 07:25:32] 2025-10-13 11:24:45,179 | INFO     | monitor loop #238: job 0:6840854019 is in state 'finished'
[2025-10-13 07:25:32] 2025-10-13 11:24:45,179 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:25:32] 2025-10-13 11:24:46,148 | INFO     | time since job start (3747s) is within the limit (172800.0s)
[2025-10-13 07:25:32] 2025-10-13 11:24:47,684 | INFO     | monitor loop #239: job 0:6840854019 is in state 'finished'
[2025-10-13 07:25:32] 2025-10-13 11:24:47,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:25:32] 2025-10-13 11:24:48,155 | INFO     | time since job start (3749s) is within the limit (172800.0s)
[2025-10-13 07:25:32] 2025-10-13 11:24:50,162 | INFO     | time since job start (3751s) is within the limit (172800.0s)
[2025-10-13 07:25:32] 2025-10-13 11:24:50,188 | INFO     | monitor loop #240: job 0:6840854019 is in state 'finished'
[2025-10-13 07:25:32] 2025-10-13 11:24:50,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:25:32] 2025-10-13 11:24:52,169 | INFO     | time since job start (3753s) is within the limit (172800.0s)
[2025-10-13 07:25:32] 2025-10-13 11:24:52,711 | INFO     | monitor loop #241: job 0:6840854019 is in state 'finished'
[2025-10-13 07:25:32] 2025-10-13 11:24:52,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:25:32] 2025-10-13 11:24:53,605 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 07:25:32] 2025-10-13 11:24:53,627 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3789.4271328125005
[2025-10-13 07:25:32] 2025-10-13 11:24:53,651 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840854019/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 07:25:32] 2025-10-13 11:24:53,652 | INFO     | extracted standard info from prmon json
[2025-10-13 07:25:32] 2025-10-13 11:24:53,652 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 07:25:32] 2025-10-13 11:24:53,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 07:25:32] 2025-10-13 11:24:53,654 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 07:25:32] 2025-10-13 11:24:53,654 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 07:25:32] 2025-10-13 11:24:53,655 | INFO     | fitting pss+swap vs Time
[2025-10-13 07:25:32] 2025-10-13 11:24:53,655 | INFO     | sum of square deviations: 48811932.833333336
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | sum of deviations: -2731593508.666667
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | mean x: 1760352888.6111112
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | mean y: 2496227.777777778
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | -- intersect: 98514647752.51701
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | intersect: 98514647752.51701
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | chi2: 0.010411594123330844
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | -- intersect: 98514647752.51701
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | current memory leak: -55.96 B/s (using 54 data points, chi2=0.01)
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | could have reported an average CPU frequency of 3779 MHz (6 samples)
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | ..............................
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | . Timing measurements:
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | . get job = 0 s
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | . initial setup = 2 s
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | . payload setup = 6 s
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | . stage-in = 0 s
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | . payload execution = 3708 s
[2025-10-13 07:25:32] 2025-10-13 11:24:53,656 | INFO     | . stage-out = 1 s
[2025-10-13 07:25:32] 2025-10-13 11:24:53,657 | INFO     | . log creation = 0 s
[2025-10-13 07:25:32] 2025-10-13 11:24:53,657 | INFO     | ..............................
[2025-10-13 07:25:32] 2025-10-13 11:24:53,717 | INFO     | 
[2025-10-13 07:25:32] 2025-10-13 11:24:53,717 | INFO     | job summary report
[2025-10-13 07:25:32] 2025-10-13 11:24:53,717 | INFO     | --------------------------------------------------
[2025-10-13 07:25:32] 2025-10-13 11:24:53,717 | INFO     | PanDA job id: 6840854019
[2025-10-13 07:25:32] 2025-10-13 11:24:53,717 | INFO     | task id: 46676269
[2025-10-13 07:25:32] 2025-10-13 11:24:53,717 | INFO     | errors: (none)
[2025-10-13 07:25:32] 2025-10-13 11:24:53,717 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 07:25:32] 2025-10-13 11:24:53,717 | INFO     | pilot state: finished 
[2025-10-13 07:25:32] 2025-10-13 11:24:53,717 | INFO     | transexitcode: 0
[2025-10-13 07:25:32] 2025-10-13 11:24:53,717 | INFO     | exeerrorcode: 0
[2025-10-13 07:25:32] 2025-10-13 11:24:53,717 | INFO     | exeerrordiag: 
[2025-10-13 07:25:32] 2025-10-13 11:24:53,717 | INFO     | exitcode: 0
[2025-10-13 07:25:32] 2025-10-13 11:24:53,717 | INFO     | exitmsg: OK
[2025-10-13 07:25:32] 2025-10-13 11:24:53,718 | INFO     | cpuconsumptiontime: 22674 s
[2025-10-13 07:25:32] 2025-10-13 11:24:53,718 | INFO     | nevents: 400
[2025-10-13 07:25:32] 2025-10-13 11:24:53,718 | INFO     | neventsw: 0
[2025-10-13 07:25:32] 2025-10-13 11:24:53,718 | INFO     | pid: 3793498
[2025-10-13 07:25:32] 2025-10-13 11:24:53,718 | INFO     | pgrp: 3793498
[2025-10-13 07:25:32] 2025-10-13 11:24:53,718 | INFO     | corecount: 11
[2025-10-13 07:25:32] 2025-10-13 11:24:53,718 | INFO     | event service: False
[2025-10-13 07:25:32] 2025-10-13 11:24:53,718 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 3719: 2375078, 3721: 2384076, 3722: 2384132, 3739: 2384454}
[2025-10-13 07:25:32] 2025-10-13 11:24:53,718 | INFO     | --------------------------------------------------
[2025-10-13 07:25:32] 2025-10-13 11:24:53,718 | INFO     | 
[2025-10-13 07:25:32] 2025-10-13 11:24:53,718 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 07:25:32] 2025-10-13 11:24:53,742 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,744 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,744 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,744 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,744 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,744 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,744 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,744 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,744 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,744 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,744 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,744 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,744 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,745 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,745 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,745 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,745 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,745 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:25:32] 2025-10-13 11:24:53,745 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,745 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:25:32] 2025-10-13 11:24:53,745 | INFO     | job 6840854019 has completed (purged errors)
[2025-10-13 07:25:32] 2025-10-13 11:24:53,745 | INFO     | overall cleanup function is called
[2025-10-13 07:25:32] 2025-10-13 11:24:54,752 | INFO     | --- collectZombieJob: --- 10, [3793498]
[2025-10-13 07:25:32] 2025-10-13 11:24:54,752 | INFO     | zombie collector waiting for pid 3793498
[2025-10-13 07:25:32] 2025-10-13 11:24:54,752 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:25:32] 2025-10-13 11:24:54,752 | INFO     | collected zombie processes
[2025-10-13 07:25:32] 2025-10-13 11:24:54,752 | INFO     | will attempt to kill all subprocesses of pid=3793498
[2025-10-13 07:25:32] 2025-10-13 11:24:55,446 | INFO     | process IDs to be killed: [3793498] (in reverse order)
[2025-10-13 07:25:32] 2025-10-13 11:24:55,640 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:25:32] 2025-10-13 11:24:55,640 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:25:32] 2025-10-13 11:24:55,675 | INFO     | did not find any defunct processes belonging to 3793498
[2025-10-13 07:25:32] 2025-10-13 11:24:55,704 | INFO     | did not find any defunct processes belonging to 3793498
[2025-10-13 07:25:32] 2025-10-13 11:24:55,704 | INFO     | ready for new job
[2025-10-13 07:25:32] 2025-10-13 11:24:55,704 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:25:32] 2025-10-13 11:24:55,705 | INFO     | ***************************************
[2025-10-13 07:25:32] 2025-10-13 11:24:55,707 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:25:32] 2025-10-13 11:24:55,707 | INFO     | ***************************************
[2025-10-13 07:25:32] 2025-10-13 11:24:55,707 | INFO     | 
[2025-10-13 07:25:32] 2025-10-13 11:24:55,725 | INFO     | architecture information:
[2025-10-13 07:25:32] 2025-10-13 11:24:55,726 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:25:32] 2025-10-13 11:24:55,753 | INFO     | cat /etc/os-release:
[2025-10-13 07:25:32] NAME="CentOS Linux"
[2025-10-13 07:25:32] VERSION="7 (Core)"
[2025-10-13 07:25:32] ID="centos"
[2025-10-13 07:25:32] ID_LIKE="rhel fedora"
[2025-10-13 07:25:32] VERSION_ID="7"
[2025-10-13 07:25:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:25:32] ANSI_COLOR="0;31"
[2025-10-13 07:25:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:25:32] HOME_URL="https://www.centos.org/"
[2025-10-13 07:25:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:25:32] 
[2025-10-13 07:25:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:25:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:25:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:25:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:25:32] 
[2025-10-13 07:25:32] 2025-10-13 11:24:55,753 | INFO     | ***************************************
[2025-10-13 07:25:32] 2025-10-13 11:24:56,257 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 07:25:32] 2025-10-13 11:24:56,325 | INFO     | sufficient remaining disk space (171050008576 B)
[2025-10-13 07:25:32] 2025-10-13 11:24:56,325 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:25:32] 2025-10-13 11:24:56,326 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:25:32] 2025-10-13 11:24:56,326 | INFO     | update_server=False
[2025-10-13 07:25:32] 2025-10-13 11:24:56,326 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:25:32] 2025-10-13 11:24:56,327 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:25:32] 2025-10-13 11:24:56,328 | INFO     | aborting loop
[2025-10-13 07:25:32] 2025-10-13 11:24:56,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:25:32] 2025-10-13 11:24:56,719 | INFO     | all data control threads have been joined
[2025-10-13 07:25:32] 2025-10-13 11:24:56,745 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:25:32] 2025-10-13 11:24:57,009 | INFO     | all payload control threads have been joined
[2025-10-13 07:25:32] 2025-10-13 11:24:57,117 | INFO     | all job control threads have been joined
[2025-10-13 07:25:32] 2025-10-13 11:24:57,332 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:57,332 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:57,339 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:57,678 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:57,738 | INFO     | [data] control thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:57,762 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:57,976 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:58,023 | INFO     | [payload] control thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:58,123 | INFO     | [job] control thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:58,305 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:58,443 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:58,750 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:58,754 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:25:32] 2025-10-13 11:24:58,807 | INFO     | [job] validate thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:58,909 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:24:59,760 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:25:00,769 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:25:32] 2025-10-13 11:25:25,377 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:25:32] 2025-10-13 11:25:25,968 | INFO     | PID=3774803 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 07:25:32] 2025-10-13 11:25:25,968 | INFO     | .. there are 57 such processes running
[2025-10-13 07:25:32] 2025-10-13 11:25:25,968 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:25:32] 2025-10-13 11:25:25,968 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:25:32] 2025-10-13 11:25:25,969 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:25:32] 2025-10-13 11:25:26,241 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139800257976128)>', '<ExcThread(monitor, started 139799759410944)>']
[2025-10-13 07:25:32] 2025-10-13 11:25:26,976 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:25:32] 2025-10-13 11:25:26,976 | INFO     | [monitor] control thread has ended
[2025-10-13 07:25:32] 2025-10-13 11:25:31,267 | INFO     | all workflow threads have been joined
[2025-10-13 07:25:32] 2025-10-13 11:25:31,267 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:25:32] 2025-10-13 11:25:31,267 | INFO     | traces error code: 0
[2025-10-13 07:25:32] 2025-10-13 11:25:31,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:25:32] 2025-10-13 11:25:31,427 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:25:32] 2025-10-13 11:25:31,437 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:25:32] 2025-10-13 11:25:31,453 [wrapper] pilotpid: 3774803
[2025-10-13 07:25:32] 2025-10-13 11:25:31,472 [wrapper] Pilot exit status: 0
[2025-10-13 07:25:32] 2025-10-13 11:25:31,510 [wrapper] pandaids: 6840854019
[2025-10-13 07:25:32] 2025-10-13 11:25:31,722 [wrapper] cleanup supervisor_pilot  298706 3774804
[2025-10-13 07:25:32] 2025-10-13 11:25:31,725 [wrapper] Test setup, not cleaning
[2025-10-13 07:25:32] 2025-10-13 11:25:31,729 [wrapper] apfmon messages muted
[2025-10-13 07:25:32] 2025-10-13 11:25:31,732 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:25:32] 2025-10-13 11:25:31,735 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:25:32]  *** Error codes and diagnostics ***
[2025-10-13 07:25:32]     "exeErrorCode": 0,
[2025-10-13 07:25:32]     "exeErrorDiag": "",
[2025-10-13 07:25:32]     "pilotErrorCode": 0,
[2025-10-13 07:25:32]     "pilotErrorDiag": "",
[2025-10-13 07:25:32]  *** Listing of results directory ***
[2025-10-13 07:25:32] total 414200
[2025-10-13 07:25:32] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 18:49 pilot3.tar.gz
[2025-10-13 07:25:32] -rwx------. 1 boincer umatlas     36292 Oct 12 18:53 runpilot2-wrapper.sh
[2025-10-13 07:25:32] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 18:53 queuedata.json
[2025-10-13 07:25:32] -rw-r--r--. 1 boincer umatlas       100 Oct 13 06:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:25:32] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 06:22 run_atlas
[2025-10-13 07:25:32] -rw-r--r--. 1 boincer umatlas       105 Oct 13 06:22 job.xml
[2025-10-13 07:25:32] -rw-r--r--. 2 boincer umatlas 222876307 Oct 13 06:22 EVNT.46676267._004635.pool.root.1
[2025-10-13 07:25:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 06:22 start_atlas.sh
[2025-10-13 07:25:32] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 06:22 shared
[2025-10-13 07:25:32] -rw-r--r--. 2 boincer umatlas    569674 Oct 13 06:22 input.tar.gz
[2025-10-13 07:25:32] -rw-r--r--. 1 boincer umatlas         0 Oct 13 06:22 boinc_lockfile
[2025-10-13 07:25:32] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 06:22 pandaJob.out
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas    972497 Oct 13 06:22 agis_schedconf.cvmfs.json
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas   1560580 Oct 13 06:22 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:25:32] drwx------. 5 boincer umatlas      4096 Oct 13 06:22 pilot3
[2025-10-13 07:25:32] -rw-r--r--. 1 boincer umatlas      7162 Oct 13 07:19 init_data.xml
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas 195617142 Oct 13 07:24 HITS.46676269._091589.pool.root.1
[2025-10-13 07:25:32] -rw-r--r--. 1 boincer umatlas       530 Oct 13 07:24 boinc_task_state.xml
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas      1045 Oct 13 07:24 memory_monitor_summary.json
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas    347059 Oct 13 07:24 log.46676269._091589.job.log.tgz.1
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas        95 Oct 13 07:24 pilot_heartbeat.json
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas      7797 Oct 13 07:24 heartbeat.json
[2025-10-13 07:25:32] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 07:25 boinc_mmap_file
[2025-10-13 07:25:32] -rw-r--r--. 1 boincer umatlas        27 Oct 13 07:25 wrapper_checkpoint.txt
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas      4825 Oct 13 07:25 pilotlog.txt
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas    523354 Oct 13 07:25 log.46676269._091589.job.log.1
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas       357 Oct 13 07:25 output.list
[2025-10-13 07:25:32] -rw-r--r--. 1 boincer umatlas       620 Oct 13 07:25 runtime_log
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas    890880 Oct 13 07:25 result.tar.gz
[2025-10-13 07:25:32] -rw-r--r--. 1 boincer umatlas      8695 Oct 13 07:25 runtime_log.err
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas       655 Oct 13 07:25 J08NDmm7JS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm7DVMDmV39jVo.diag
[2025-10-13 07:25:32] -rw-r--r--. 1 boincer umatlas     22210 Oct 13 07:25 stderr.txt
[2025-10-13 07:25:32] HITS file was successfully produced:
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas 195617142 Oct 13 07:24 shared/HITS.pool.root.1
[2025-10-13 07:25:32]  *** Contents of shared directory: ***
[2025-10-13 07:25:32] total 410148
[2025-10-13 07:25:32] -rw-r--r--. 2 boincer umatlas 222876307 Oct 13 06:22 ATLAS.root_0
[2025-10-13 07:25:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 06:22 start_atlas.sh
[2025-10-13 07:25:32] -rw-r--r--. 2 boincer umatlas    569674 Oct 13 06:22 input.tar.gz
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas 195617142 Oct 13 07:24 HITS.pool.root.1
[2025-10-13 07:25:32] -rw-------. 1 boincer umatlas    890880 Oct 13 07:25 result.tar.gz
07:25:33 (3767694): run_atlas exited; CPU time 22762.513321
07:25:33 (3767694): called boinc_finish(0)

</stderr_txt>
]]>

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