Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:03:04 (9041): wrapper (7.7.26015): starting
05:03:04 (9041): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 05:03:04] Arguments: --nthreads 12
[2025-10-13 05:03:04] Threads: 12
[2025-10-13 05:03:04] Checking for CVMFS
[2025-10-13 05:03:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:03:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:03:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:03:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:03:05] 2.11.2.0 3009 9383 84492 151654 3 59 19499869 20275200 1 130560 0 9095189 99.993 313070 43737 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 05:03:05] CVMFS is ok
[2025-10-13 05:03:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:03:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:03:05] Further information can be found at the LHC@home message board.
[2025-10-13 05:03:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:03:05] Checking for apptainer binary...
[2025-10-13 05:03:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:03:05] Running /usr/bin/apptainer --version
[2025-10-13 05:03:05] apptainer version 1.3.2-1.el7
[2025-10-13 05:03:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:03:06] c-115-42.aglt2.org
[2025-10-13 05:03:06] apptainer works
[2025-10-13 05:03:06] Set ATHENA_PROC_NUMBER=12
[2025-10-13 05:03:06] Set ATHENA_CORE_NUMBER=12
[2025-10-13 05:03:06] Starting ATLAS job with PandaID=6841069639
[2025-10-13 05:03:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:07:32]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:07:32] 2025-10-13 10:06:22,563 | INFO     | adding to output.list: log.46676269._093679.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5a/99/log.46676269._093679.job.log.tg
[2025-10-13 06:07:32] 2025-10-13 10:06:22,564 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 06:07:32] 2025-10-13 10:06:22,565 | INFO     | summary of transferred files:
[2025-10-13 06:07:32] 2025-10-13 10:06:22,565 | INFO     |  -- lfn=log.46676269._093679.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 06:07:32] 2025-10-13 10:06:22,565 | INFO     | stage-out finished correctly
[2025-10-13 06:07:32] 2025-10-13 10:06:22,596 | INFO     | time since job start (3782s) is within the limit (172800.0s)
[2025-10-13 06:07:32] 2025-10-13 10:06:22,640 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 06:07:32] 2025-10-13 10:06:24,607 | INFO     | time since job start (3784s) is within the limit (172800.0s)
[2025-10-13 06:07:32] 2025-10-13 10:06:25,540 | INFO     | job 6841069639 has state=finished
[2025-10-13 06:07:32] 2025-10-13 10:06:25,540 | INFO     | preparing for final server update for job 6841069639 in state='finished'
[2025-10-13 06:07:32] 2025-10-13 10:06:25,541 | INFO     | this job has now completed (state=finished)
[2025-10-13 06:07:32] 2025-10-13 10:06:25,541 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 06:07:32] 2025-10-13 10:06:25,541 | INFO     | log transfer has been attempted: DONE
[2025-10-13 06:07:32] 2025-10-13 10:06:25,541 | INFO     | job 6841069639 has finished - writing final server update
[2025-10-13 06:07:32] 2025-10-13 10:06:25,542 | INFO     | total number of processed events: 400 (read)
[2025-10-13 06:07:32] 2025-10-13 10:06:25,542 | INFO     | executing command: lscpu
[2025-10-13 06:07:32] 2025-10-13 10:06:25,568 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 06:07:32] 2025-10-13 10:06:26,612 | INFO     | time since job start (3786s) is within the limit (172800.0s)
[2025-10-13 06:07:32] 2025-10-13 10:06:27,571 | WARNING  | process 19202 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 06:07:32] 2025-10-13 10:06:27,572 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841069639/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:07:32] 2025-10-13 10:06:27,572 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841069639/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:07:32] 2025-10-13 10:06:27,573 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 06:07:32] 2025-10-13 10:06:27,573 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 06:07:32] 2025-10-13 10:06:27,573 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3837487 B
[2025-10-13 06:07:32] 2025-10-13 10:06:27,574 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15301 B
[2025-10-13 06:07:32] 2025-10-13 10:06:27,574 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 06:07:32] 2025-10-13 10:06:28,618 | INFO     | time since job start (3788s) is within the limit (172800.0s)
[2025-10-13 06:07:32] 2025-10-13 10:06:29,730 | INFO     | PID=12737 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 06:07:32] 2025-10-13 10:06:29,990 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 06:07:32] 2025-10-13 10:06:29,997 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-10-13 06:07:32] 2025-10-13 10:06:30,000 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841069639/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:07:32] 2025-10-13 10:06:30,000 | INFO     | extracted standard info from prmon json
[2025-10-13 06:07:32] 2025-10-13 10:06:30,001 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 06:07:32] 2025-10-13 10:06:30,001 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 06:07:32] 2025-10-13 10:06:30,001 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:07:32] 2025-10-13 10:06:30,001 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:07:32] 2025-10-13 10:06:30,003 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:07:32] 2025-10-13 10:06:30,003 | INFO     | sum of square deviations: 51573060.0
[2025-10-13 06:07:32] 2025-10-13 10:06:30,004 | INFO     | sum of deviations: -1055186540.0000004
[2025-10-13 06:07:32] 2025-10-13 10:06:30,004 | INFO     | mean x: 1760348181.0
[2025-10-13 06:07:32] 2025-10-13 10:06:30,004 | INFO     | mean y: 2719649.909090909
[2025-10-13 06:07:32] 2025-10-13 10:06:30,004 | INFO     | -- intersect: 36019502565.343704
[2025-10-13 06:07:32] 2025-10-13 10:06:30,004 | INFO     | intersect: 36019502565.343704
[2025-10-13 06:07:32] 2025-10-13 10:06:30,004 | INFO     | chi2: 0.03100522646006563
[2025-10-13 06:07:32] 2025-10-13 10:06:30,005 | INFO     | -- intersect: 36019502565.343704
[2025-10-13 06:07:32] 2025-10-13 10:06:30,005 | INFO     | current memory leak: -20.46 B/s (using 55 data points, chi2=0.03)
[2025-10-13 06:07:32] 2025-10-13 10:06:30,005 | INFO     | could have reported an average CPU frequency of 2204 MHz (6 samples)
[2025-10-13 06:07:32] 2025-10-13 10:06:30,005 | INFO     | ..............................
[2025-10-13 06:07:32] 2025-10-13 10:06:30,005 | INFO     | . Timing measurements:
[2025-10-13 06:07:32] 2025-10-13 10:06:30,005 | INFO     | . get job = 0 s
[2025-10-13 06:07:32] 2025-10-13 10:06:30,006 | INFO     | . initial setup = 2 s
[2025-10-13 06:07:32] 2025-10-13 10:06:30,006 | INFO     | . payload setup = 6 s
[2025-10-13 06:07:32] 2025-10-13 10:06:30,006 | INFO     | . stage-in = 0 s
[2025-10-13 06:07:32] 2025-10-13 10:06:30,006 | INFO     | . payload execution = 3754 s
[2025-10-13 06:07:32] 2025-10-13 10:06:30,006 | INFO     | . stage-out = 0 s
[2025-10-13 06:07:32] 2025-10-13 10:06:30,006 | INFO     | . log creation = 0 s
[2025-10-13 06:07:32] 2025-10-13 10:06:30,006 | INFO     | ..............................
[2025-10-13 06:07:32] 2025-10-13 10:06:30,017 | INFO     | sufficient remaining disk space (18588106752 B)
[2025-10-13 06:07:32] 2025-10-13 10:06:30,023 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 06:07:32] 2025-10-13 10:06:30,084 | INFO     | 
[2025-10-13 06:07:32] 2025-10-13 10:06:30,084 | INFO     | job summary report
[2025-10-13 06:07:32] 2025-10-13 10:06:30,084 | INFO     | --------------------------------------------------
[2025-10-13 06:07:32] 2025-10-13 10:06:30,084 | INFO     | PanDA job id: 6841069639
[2025-10-13 06:07:32] 2025-10-13 10:06:30,085 | INFO     | task id: 46676269
[2025-10-13 06:07:32] 2025-10-13 10:06:30,085 | INFO     | errors: (none)
[2025-10-13 06:07:32] 2025-10-13 10:06:30,085 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:07:32] 2025-10-13 10:06:30,085 | INFO     | pilot state: finished 
[2025-10-13 06:07:32] 2025-10-13 10:06:30,085 | INFO     | transexitcode: 0
[2025-10-13 06:07:32] 2025-10-13 10:06:30,085 | INFO     | exeerrorcode: 0
[2025-10-13 06:07:32] 2025-10-13 10:06:30,086 | INFO     | exeerrordiag: 
[2025-10-13 06:07:32] 2025-10-13 10:06:30,086 | INFO     | exitcode: 0
[2025-10-13 06:07:32] 2025-10-13 10:06:30,086 | INFO     | exitmsg: OK
[2025-10-13 06:07:32] 2025-10-13 10:06:30,086 | INFO     | cpuconsumptiontime: 40401 s
[2025-10-13 06:07:32] 2025-10-13 10:06:30,086 | INFO     | nevents: 400
[2025-10-13 06:07:32] 2025-10-13 10:06:30,087 | INFO     | neventsw: 0
[2025-10-13 06:07:32] 2025-10-13 10:06:30,087 | INFO     | pid: 19202
[2025-10-13 06:07:32] 2025-10-13 10:06:30,087 | INFO     | pgrp: 19202
[2025-10-13 06:07:32] 2025-10-13 10:06:30,087 | INFO     | corecount: 12
[2025-10-13 06:07:32] 2025-10-13 10:06:30,087 | INFO     | event service: False
[2025-10-13 06:07:32] 2025-10-13 10:06:30,087 | INFO     | sizes: {0: 2348630, 1: 2348885, 6: 2349147, 12: 2349175, 3765: 2374904, 3766: 2384086, 3773: 2384224}
[2025-10-13 06:07:32] 2025-10-13 10:06:30,088 | INFO     | --------------------------------------------------
[2025-10-13 06:07:32] 2025-10-13 10:06:30,088 | INFO     | 
[2025-10-13 06:07:32] 2025-10-13 10:06:30,088 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 06:07:32] 2025-10-13 10:06:30,091 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6841069639: 4130559 B (within 2537553920 B limit)
[2025-10-13 06:07:32] 2025-10-13 10:06:30,092 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6841069639/HITS.46676269._093679.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 06:07:32] 2025-10-13 10:06:30,092 | INFO     | total size of present files: 0 B (workdir size: 4130559 B)
[2025-10-13 06:07:32] 2025-10-13 10:06:30,092 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6841069639/HITS.46676269._093679.pool.root.1 since it does not exist
[2025-10-13 06:07:32] 2025-10-13 10:06:30,109 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,109 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,110 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,110 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,110 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,110 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,110 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,110 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,111 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,111 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,111 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,111 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,111 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,111 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,112 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,112 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:07:32] 2025-10-13 10:06:30,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,112 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:07:32] 2025-10-13 10:06:30,113 | INFO     | job 6841069639 has completed (purged errors)
[2025-10-13 06:07:32] 2025-10-13 10:06:30,113 | INFO     | overall cleanup function is called
[2025-10-13 06:07:32] 2025-10-13 10:06:30,186 | INFO     | number of running child processes to parent process 19202: 1
[2025-10-13 06:07:32] 2025-10-13 10:06:30,186 | INFO     | maximum number of monitored processes: 6
[2025-10-13 06:07:32] 2025-10-13 10:06:30,186 | INFO     | aborting job monitoring since job object (job id=6841069639) has expired
[2025-10-13 06:07:32] 2025-10-13 10:06:31,121 | INFO     | --- collectZombieJob: --- 10, [19202]
[2025-10-13 06:07:32] 2025-10-13 10:06:31,121 | INFO     | zombie collector waiting for pid 19202
[2025-10-13 06:07:32] 2025-10-13 10:06:31,121 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:07:32] 2025-10-13 10:06:31,121 | INFO     | collected zombie processes
[2025-10-13 06:07:32] 2025-10-13 10:06:31,121 | INFO     | will attempt to kill all subprocesses of pid=19202
[2025-10-13 06:07:32] 2025-10-13 10:06:31,204 | INFO     | process IDs to be killed: [19202] (in reverse order)
[2025-10-13 06:07:32] 2025-10-13 10:06:31,253 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:07:32] 2025-10-13 10:06:31,253 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:07:32] 2025-10-13 10:06:31,257 | INFO     | did not find any defunct processes belonging to 19202
[2025-10-13 06:07:32] 2025-10-13 10:06:31,259 | INFO     | did not find any defunct processes belonging to 19202
[2025-10-13 06:07:32] 2025-10-13 10:06:31,259 | INFO     | ready for new job
[2025-10-13 06:07:32] 2025-10-13 10:06:31,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:07:32] 2025-10-13 10:06:31,260 | INFO     | ***************************************
[2025-10-13 06:07:32] 2025-10-13 10:06:31,260 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:07:32] 2025-10-13 10:06:31,260 | INFO     | ***************************************
[2025-10-13 06:07:32] 2025-10-13 10:06:31,260 | INFO     | 
[2025-10-13 06:07:32] 2025-10-13 10:06:31,261 | INFO     | architecture information:
[2025-10-13 06:07:32] 2025-10-13 10:06:31,261 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:07:32] 2025-10-13 10:06:31,276 | INFO     | cat /etc/os-release:
[2025-10-13 06:07:32] NAME="CentOS Linux"
[2025-10-13 06:07:32] VERSION="7 (Core)"
[2025-10-13 06:07:32] ID="centos"
[2025-10-13 06:07:32] ID_LIKE="rhel fedora"
[2025-10-13 06:07:32] VERSION_ID="7"
[2025-10-13 06:07:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:07:32] ANSI_COLOR="0;31"
[2025-10-13 06:07:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:07:32] HOME_URL="https://www.centos.org/"
[2025-10-13 06:07:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:07:32] 
[2025-10-13 06:07:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:07:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:07:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:07:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:07:32] 
[2025-10-13 06:07:32] 2025-10-13 10:06:31,276 | INFO     | ***************************************
[2025-10-13 06:07:32] 2025-10-13 10:06:31,779 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 06:07:32] 2025-10-13 10:06:31,796 | INFO     | sufficient remaining disk space (18592301056 B)
[2025-10-13 06:07:32] 2025-10-13 10:06:31,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:07:32] 2025-10-13 10:06:31,796 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:07:32] 2025-10-13 10:06:31,797 | INFO     | update_server=False
[2025-10-13 06:07:32] 2025-10-13 10:06:31,797 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:07:32] 2025-10-13 10:06:31,797 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:07:32] 2025-10-13 10:06:31,797 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:07:32] 2025-10-13 10:06:31,798 | INFO     | aborting loop
[2025-10-13 06:07:32] 2025-10-13 10:06:32,004 | INFO     | all data control threads have been joined
[2025-10-13 06:07:32] 2025-10-13 10:06:32,802 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:32,803 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:32,803 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:32,857 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:32,896 | INFO     | all job control threads have been joined
[2025-10-13 06:07:32] 2025-10-13 10:06:33,010 | INFO     | [data] control thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:33,025 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:33,154 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:07:32] 2025-10-13 10:06:33,175 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:33,191 | INFO     | all payload control threads have been joined
[2025-10-13 06:07:32] 2025-10-13 10:06:33,221 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:07:32] 2025-10-13 10:06:33,359 | INFO     | [job] validate thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:33,425 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:33,793 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:33,837 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:33,901 | INFO     | [job] control thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:33,912 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:34,196 | INFO     | [payload] control thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:35,159 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:06:37,227 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:07:32] 2025-10-13 10:07:01,970 | INFO     | PID=12737 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 06:07:32] 2025-10-13 10:07:01,970 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:07:32] 2025-10-13 10:07:01,970 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:07:32] 2025-10-13 10:07:01,971 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:07:32] 2025-10-13 10:07:26,486 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:07:32] 2025-10-13 10:07:27,252 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140258272212800)>', '<ExcThread(monitor, started 140257366361856)>']
[2025-10-13 06:07:32] 2025-10-13 10:07:28,092 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:07:32] 2025-10-13 10:07:28,092 | INFO     | [monitor] control thread has ended
[2025-10-13 06:07:32] 2025-10-13 10:07:32,266 | INFO     | all workflow threads have been joined
[2025-10-13 06:07:32] 2025-10-13 10:07:32,266 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:07:32] 2025-10-13 10:07:32,266 | INFO     | traces error code: 0
[2025-10-13 06:07:32] 2025-10-13 10:07:32,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:07:32] 2025-10-13 10:07:32,373 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:07:32] 2025-10-13 10:07:32,377 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:07:32] 2025-10-13 10:07:32,380 [wrapper] pilotpid: 12737
[2025-10-13 06:07:32] 2025-10-13 10:07:32,384 [wrapper] Pilot exit status: 0
[2025-10-13 06:07:32] 2025-10-13 10:07:32,400 [wrapper] pandaids: 6841069639
[2025-10-13 06:07:32] 2025-10-13 10:07:32,453 [wrapper] cleanup supervisor_pilot 14747 12738
[2025-10-13 06:07:32] 2025-10-13 10:07:32,457 [wrapper] Test setup, not cleaning
[2025-10-13 06:07:32] 2025-10-13 10:07:32,461 [wrapper] apfmon messages muted
[2025-10-13 06:07:32] 2025-10-13 10:07:32,464 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:07:32] 2025-10-13 10:07:32,468 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:07:32]  *** Error codes and diagnostics ***
[2025-10-13 06:07:32]     "exeErrorCode": 0,
[2025-10-13 06:07:32]     "exeErrorDiag": "",
[2025-10-13 06:07:32]     "pilotErrorCode": 0,
[2025-10-13 06:07:32]     "pilotErrorDiag": "",
[2025-10-13 06:07:32]  *** Listing of results directory ***
[2025-10-13 06:07:32] total 404092
[2025-10-13 06:07:32] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 20:48 pilot3.tar.gz
[2025-10-13 06:07:32] -rwx------ 1 boincer umatlas     36292 Oct 12 20:59 runpilot2-wrapper.sh
[2025-10-13 06:07:32] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 20:59 queuedata.json
[2025-10-13 06:07:32] -rw-r--r-- 1 boincer umatlas       100 Oct 13 05:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:07:32] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 05:03 run_atlas
[2025-10-13 06:07:32] -rw-r--r-- 1 boincer umatlas       105 Oct 13 05:03 job.xml
[2025-10-13 06:07:32] -rw-r--r-- 2 boincer umatlas 221887981 Oct 13 05:03 EVNT.46676267._004714.pool.root.1
[2025-10-13 06:07:32] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 05:03 start_atlas.sh
[2025-10-13 06:07:32] drwxrwx--x 2 boincer umatlas      4096 Oct 13 05:03 shared
[2025-10-13 06:07:32] -rw-r--r-- 2 boincer umatlas    569676 Oct 13 05:03 input.tar.gz
[2025-10-13 06:07:32] -rw-r--r-- 1 boincer umatlas         0 Oct 13 05:03 boinc_lockfile
[2025-10-13 06:07:32] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 05:03 pandaJob.out
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas    972857 Oct 13 05:03 agis_schedconf.cvmfs.json
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas   1560580 Oct 13 05:03 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:07:32] drwx------ 5 boincer umatlas      4096 Oct 13 05:03 pilot3
[2025-10-13 06:07:32] -rw-r--r-- 1 boincer umatlas      5954 Oct 13 06:03 init_data.xml
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas 186156286 Oct 13 06:05 HITS.46676269._093679.pool.root.1
[2025-10-13 06:07:32] -rw-r--r-- 1 boincer umatlas       529 Oct 13 06:05 boinc_task_state.xml
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas        95 Oct 13 06:06 pilot_heartbeat.json
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas      1061 Oct 13 06:06 memory_monitor_summary.json
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas    361972 Oct 13 06:06 log.46676269._093679.job.log.tgz.1
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas      7850 Oct 13 06:06 heartbeat.json
[2025-10-13 06:07:32] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 06:07 boinc_mmap_file
[2025-10-13 06:07:32] -rw-r--r-- 1 boincer umatlas        27 Oct 13 06:07 wrapper_checkpoint.txt
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas      4746 Oct 13 06:07 pilotlog.txt
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas    561805 Oct 13 06:07 log.46676269._093679.job.log.1
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas       357 Oct 13 06:07 output.list
[2025-10-13 06:07:32] -rw-r--r-- 1 boincer umatlas       620 Oct 13 06:07 runtime_log
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas    942080 Oct 13 06:07 result.tar.gz
[2025-10-13 06:07:32] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 06:07 runtime_log.err
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas       659 Oct 13 06:07 9FIKDms5LS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYImNDmzIJZJm.diag
[2025-10-13 06:07:32] -rw-r--r-- 1 boincer umatlas     22620 Oct 13 06:07 stderr.txt
[2025-10-13 06:07:32] HITS file was successfully produced:
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas 186156286 Oct 13 06:05 shared/HITS.pool.root.1
[2025-10-13 06:07:32]  *** Contents of shared directory: ***
[2025-10-13 06:07:32] total 399984
[2025-10-13 06:07:32] -rw-r--r-- 2 boincer umatlas 221887981 Oct 13 05:03 ATLAS.root_0
[2025-10-13 06:07:32] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 05:03 start_atlas.sh
[2025-10-13 06:07:32] -rw-r--r-- 2 boincer umatlas    569676 Oct 13 05:03 input.tar.gz
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas 186156286 Oct 13 06:05 HITS.pool.root.1
[2025-10-13 06:07:32] -rw------- 1 boincer umatlas    942080 Oct 13 06:07 result.tar.gz
06:07:34 (9041): run_atlas exited; CPU time 40400.058027
06:07:34 (9041): called boinc_finish(0)

</stderr_txt>
]]>

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