Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:36:44 (2547584): wrapper (7.7.26015): starting
19:36:44 (2547584): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 19:36:44] Arguments: --nthreads 4
[2025-10-13 19:36:44] Threads: 4
[2025-10-13 19:36:44] Checking for CVMFS
[2025-10-13 19:36:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 19:36:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 19:36:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 19:36:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 19:36:45] 2.9.2.0 287733 6122 100204 151668 1 57 22595782 36864001 0 130560 0 5886351 99.993 207272 879 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 19:36:45] CVMFS is ok
[2025-10-13 19:36:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 19:36:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 19:36:45] Further information can be found at the LHC@home message board.
[2025-10-13 19:36:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 19:36:45] Checking for apptainer binary...
[2025-10-13 19:36:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 19:36:45] Running /usr/bin/apptainer --version
[2025-10-13 19:36:45] apptainer version 1.4.1-1.1
[2025-10-13 19:36:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 19:36:45] thA373a
[2025-10-13 19:36:45] apptainer works
[2025-10-13 19:36:45] Set ATHENA_PROC_NUMBER=4
[2025-10-13 19:36:45] Set ATHENA_CORE_NUMBER=4
[2025-10-13 19:36:45] Starting ATLAS job with PandaID=6840962101
[2025-10-13 19:36:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 20:49:06]  *** The last 200 lines of the pilot log: ***
[2025-10-13 20:49:06] 2025-10-13 18:48:35,672 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 20:49:06] 2025-10-13 18:48:35,672 | INFO     | collected zombie processes
[2025-10-13 20:49:06] 2025-10-13 18:48:35,672 | INFO     | will attempt to kill all subprocesses of pid=2557930
[2025-10-13 20:49:06] 2025-10-13 18:48:35,719 | INFO     | process IDs to be killed: [2557930] (in reverse order)
[2025-10-13 20:49:06] 2025-10-13 18:48:35,752 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 20:49:06] 2025-10-13 18:48:35,753 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 20:49:06] 2025-10-13 18:48:35,754 | INFO     | did not find any defunct processes belonging to 2557930
[2025-10-13 20:49:06] 2025-10-13 18:48:35,756 | INFO     | did not find any defunct processes belonging to 2557930
[2025-10-13 20:49:06] 2025-10-13 18:48:35,756 | INFO     | ready for new job
[2025-10-13 20:49:06] 2025-10-13 18:48:35,756 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 20:49:06] 2025-10-13 18:48:35,757 | INFO     | ***************************************
[2025-10-13 20:49:06] 2025-10-13 18:48:35,757 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 20:49:06] 2025-10-13 18:48:35,757 | INFO     | ***************************************
[2025-10-13 20:49:06] 2025-10-13 18:48:35,757 | INFO     | 
[2025-10-13 20:49:06] 2025-10-13 18:48:35,757 | INFO     | architecture information:
[2025-10-13 20:49:06] 2025-10-13 18:48:35,757 | INFO     | executing command: cat /etc/os-release
[2025-10-13 20:49:06] 2025-10-13 18:48:35,772 | INFO     | cat /etc/os-release:
[2025-10-13 20:49:06] NAME="CentOS Linux"
[2025-10-13 20:49:06] VERSION="7 (Core)"
[2025-10-13 20:49:06] ID="centos"
[2025-10-13 20:49:06] ID_LIKE="rhel fedora"
[2025-10-13 20:49:06] VERSION_ID="7"
[2025-10-13 20:49:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 20:49:06] ANSI_COLOR="0;31"
[2025-10-13 20:49:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 20:49:06] HOME_URL="https://www.centos.org/"
[2025-10-13 20:49:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 20:49:06] 
[2025-10-13 20:49:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 20:49:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 20:49:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 20:49:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 20:49:06] 
[2025-10-13 20:49:06] 2025-10-13 18:48:35,772 | INFO     | ***************************************
[2025-10-13 20:49:06] 2025-10-13 18:48:36,273 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 20:49:06] 2025-10-13 18:48:36,290 | INFO     | sufficient remaining disk space (338940657664 B)
[2025-10-13 20:49:06] 2025-10-13 18:48:36,291 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 20:49:06] 2025-10-13 18:48:36,291 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 20:49:06] 2025-10-13 18:48:36,291 | INFO     | update_server=False
[2025-10-13 20:49:06] 2025-10-13 18:48:36,291 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 20:49:06] 2025-10-13 18:48:36,291 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:49:06] 2025-10-13 18:48:36,768 | INFO     | all data control threads have been joined
[2025-10-13 20:49:06] 2025-10-13 18:48:36,938 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:49:06] 2025-10-13 18:48:36,939 | INFO     | aborting loop
[2025-10-13 20:49:06] 2025-10-13 18:48:37,045 | INFO     | all job control threads have been joined
[2025-10-13 20:49:06] 2025-10-13 18:48:37,297 | INFO     | [job] retrieve thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:37,297 | INFO     | [job] queue monitor thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:37,472 | INFO     | all payload control threads have been joined
[2025-10-13 20:49:06] 2025-10-13 18:48:37,576 | INFO     | [data] copytool_in thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:37,577 | INFO     | [payload] validate_post thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:37,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 20:49:06] 2025-10-13 18:48:37,712 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 20:49:06] 2025-10-13 18:48:37,774 | INFO     | [data] control thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:37,944 | INFO     | [job] job monitor thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:38,051 | INFO     | [job] control thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:38,270 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:38,339 | INFO     | [job] validate thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:38,411 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:38,478 | INFO     | [payload] control thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:38,482 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:38,647 | INFO     | [payload] failed_post thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:39,686 | INFO     | [data] copytool_out thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:41,718 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:46,513 | INFO     | job.realtimelogging is not enabled
[2025-10-13 20:49:06] 2025-10-13 18:48:47,519 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 20:49:06] 2025-10-13 18:48:57,948 | INFO     | [monitor] cgroup control has ended
[2025-10-13 20:49:06] 2025-10-13 18:48:59,922 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139670809950016)>', '<ExcThread(monitor, started 139669509498624)>']
[2025-10-13 20:49:06] 2025-10-13 18:49:04,945 | INFO     | all workflow threads have been joined
[2025-10-13 20:49:06] 2025-10-13 18:49:04,945 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 20:49:06] 2025-10-13 18:49:04,945 | INFO     | traces error code: 0
[2025-10-13 20:49:06] 2025-10-13 18:49:04,946 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 20:49:06] 2025-10-13 18:49:06,400 | INFO     | PID=2551365 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 20:49:06] 2025-10-13 18:49:06,400 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 20:49:06] 2025-10-13 18:49:06,400 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 20:49:06] 2025-10-13 18:49:06,400 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 20:49:06] 2025-10-13 18:49:06,400 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 20:49:06] 2025-10-13 18:49:06,400 | INFO     | [monitor] control thread has ended
[2025-10-13 20:49:06] 2025-10-13 18:49:06,477 [wrapper] ==== pilot stdout END ====
[2025-10-13 20:49:06] 2025-10-13 18:49:06,482 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 20:49:06] 2025-10-13 18:49:06,486 [wrapper] pilotpid: 2551365
[2025-10-13 20:49:06] 2025-10-13 18:49:06,490 [wrapper] Pilot exit status: 0
[2025-10-13 20:49:06] 2025-10-13 18:49:06,501 [wrapper] pandaids: 6840962101
[2025-10-13 20:49:06] 2025-10-13 18:49:06,524 [wrapper] cleanup supervisor_pilot 2567812 2551366
[2025-10-13 20:49:06] 2025-10-13 18:49:06,529 [wrapper] Test setup, not cleaning
[2025-10-13 20:49:06] 2025-10-13 18:49:06,533 [wrapper] apfmon messages muted
[2025-10-13 20:49:06] 2025-10-13 18:49:06,537 [wrapper] ==== wrapper stdout END ====
[2025-10-13 20:49:06] 2025-10-13 18:49:06,540 [wrapper] ==== wrapper stderr END ====
[2025-10-13 20:49:06]  *** Error codes and diagnostics ***
[2025-10-13 20:49:06]     "exeErrorCode": 0,
[2025-10-13 20:49:06]     "exeErrorDiag": "",
[2025-10-13 20:49:06]     "pilotErrorCode": 0,
[2025-10-13 20:49:06]     "pilotErrorDiag": "",
[2025-10-13 20:49:06]  *** Listing of results directory ***
[2025-10-13 20:49:06] total 411052
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:17 queuedata.json
[2025-10-13 20:49:06] -rwx------ 1 boinc boinc     36292 Oct 13 01:20 runpilot2-wrapper.sh
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc       100 Oct 13 19:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 20:49:06] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 19:36 run_atlas
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc       105 Oct 13 19:36 job.xml
[2025-10-13 20:49:06] -rw-r--r-- 2 boinc boinc 223472298 Oct 13 19:36 EVNT.46676267._004652.pool.root.1
[2025-10-13 20:49:06] -rw-r--r-- 2 boinc boinc    569683 Oct 13 19:36 input.tar.gz
[2025-10-13 20:49:06] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:36 start_atlas.sh
[2025-10-13 20:49:06] drwxrwx--x 2 boinc boinc      4096 Oct 13 19:36 shared
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc         0 Oct 13 19:36 boinc_setup_complete
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc      6376 Oct 13 19:36 init_data.xml
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc         0 Oct 13 19:36 boinc_lockfile
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc      2550 Oct 13 19:36 pandaJob.out
[2025-10-13 20:49:06] -rw------- 1 boinc boinc    972791 Oct 13 19:36 agis_schedconf.cvmfs.json
[2025-10-13 20:49:06] -rw------- 1 boinc boinc   1560580 Oct 13 19:36 agis_ddmendpoints.agis.ALL.json
[2025-10-13 20:49:06] drwx------ 5 boinc boinc      4096 Oct 13 19:36 pilot3
[2025-10-13 20:49:06] -rw------- 1 boinc boinc 191729511 Oct 13 20:48 HITS.46676269._092072.pool.root.1
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc       529 Oct 13 20:48 boinc_task_state.xml
[2025-10-13 20:49:06] -rw------- 1 boinc boinc        95 Oct 13 20:48 pilot_heartbeat.json
[2025-10-13 20:49:06] -rw------- 1 boinc boinc      1022 Oct 13 20:48 memory_monitor_summary.json
[2025-10-13 20:49:06] -rw------- 1 boinc boinc    275260 Oct 13 20:48 log.46676269._092072.job.log.tgz.1
[2025-10-13 20:49:06] -rw------- 1 boinc boinc      7772 Oct 13 20:48 heartbeat.json
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc      8192 Oct 13 20:48 boinc_mmap_file
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc        27 Oct 13 20:48 wrapper_checkpoint.txt
[2025-10-13 20:49:06] -rw------- 1 boinc boinc       747 Oct 13 20:49 pilotlog.txt
[2025-10-13 20:49:06] -rw------- 1 boinc boinc    639019 Oct 13 20:49 log.46676269._092072.job.log.1
[2025-10-13 20:49:06] -rw------- 1 boinc boinc       357 Oct 13 20:49 output.list
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc       620 Oct 13 20:49 runtime_log
[2025-10-13 20:49:06] -rw------- 1 boinc boinc    931840 Oct 13 20:49 result.tar.gz
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc      8782 Oct 13 20:49 runtime_log.err
[2025-10-13 20:49:06] -rw------- 1 boinc boinc       659 Oct 13 20:49 NZINDmpXKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm61lNDmljNB2m.diag
[2025-10-13 20:49:06] -rw-r--r-- 1 boinc boinc     10509 Oct 13 20:49 stderr.txt
[2025-10-13 20:49:06] HITS file was successfully produced:
[2025-10-13 20:49:06] -rw------- 1 boinc boinc 191729511 Oct 13 20:48 shared/HITS.pool.root.1
[2025-10-13 20:49:06]  *** Contents of shared directory: ***
[2025-10-13 20:49:06] total 406968
[2025-10-13 20:49:06] -rw-r--r-- 2 boinc boinc 223472298 Oct 13 19:36 ATLAS.root_0
[2025-10-13 20:49:06] -rw-r--r-- 2 boinc boinc    569683 Oct 13 19:36 input.tar.gz
[2025-10-13 20:49:06] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:36 start_atlas.sh
[2025-10-13 20:49:06] -rw------- 1 boinc boinc 191729511 Oct 13 20:48 HITS.pool.root.1
[2025-10-13 20:49:06] -rw------- 1 boinc boinc    931840 Oct 13 20:49 result.tar.gz
20:49:07 (2547584): run_atlas exited; CPU time 16097.667776
20:49:07 (2547584): called boinc_finish(0)

</stderr_txt>
]]>

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