Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:22:07 (3191621): wrapper (7.7.26015): starting
20:22:07 (3191621): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 20:22:07] Arguments: --nthreads 3
[2025-10-13 20:22:07] Threads: 3
[2025-10-13 20:22:07] Checking for CVMFS
[2025-10-13 20:22:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 20:22:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 20:22:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 20:22:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 20:22:08] 2.9.2.0 1484052 6021 68508 151670 1 56 29091175 36864000 0 130560 0 4471880 99.990 211684 976 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 20:22:08] CVMFS is ok
[2025-10-13 20:22:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 20:22:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 20:22:08] Further information can be found at the LHC@home message board.
[2025-10-13 20:22:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 20:22:08] Checking for apptainer binary...
[2025-10-13 20:22:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 20:22:08] Running /usr/bin/apptainer --version
[2025-10-13 20:22:08] apptainer version 1.4.1-1.1
[2025-10-13 20:22:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 20:22:08] magicA244b
[2025-10-13 20:22:08] apptainer works
[2025-10-13 20:22:08] Set ATHENA_PROC_NUMBER=3
[2025-10-13 20:22:08] Set ATHENA_CORE_NUMBER=3
[2025-10-13 20:22:08] Starting ATLAS job with PandaID=6842660104
[2025-10-13 20:22:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 21:54:33]  *** The last 200 lines of the pilot log: ***
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,256 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,257 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 21:54:33] 2025-10-13 19:53:47,257 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,257 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 21:54:33] 2025-10-13 19:53:47,257 | INFO     | job 6842660104 has completed (purged errors)
[2025-10-13 21:54:33] 2025-10-13 19:53:47,257 | INFO     | overall cleanup function is called
[2025-10-13 21:54:33] 2025-10-13 19:53:48,263 | INFO     | --- collectZombieJob: --- 10, [3201793]
[2025-10-13 21:54:33] 2025-10-13 19:53:48,263 | INFO     | zombie collector waiting for pid 3201793
[2025-10-13 21:54:33] 2025-10-13 19:53:48,264 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 21:54:33] 2025-10-13 19:53:48,264 | INFO     | collected zombie processes
[2025-10-13 21:54:33] 2025-10-13 19:53:48,264 | INFO     | will attempt to kill all subprocesses of pid=3201793
[2025-10-13 21:54:33] 2025-10-13 19:53:48,303 | INFO     | process IDs to be killed: [3201793] (in reverse order)
[2025-10-13 21:54:33] 2025-10-13 19:53:48,328 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 21:54:33] 2025-10-13 19:53:48,328 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 21:54:33] 2025-10-13 19:53:48,329 | INFO     | did not find any defunct processes belonging to 3201793
[2025-10-13 21:54:33] 2025-10-13 19:53:48,330 | INFO     | did not find any defunct processes belonging to 3201793
[2025-10-13 21:54:33] 2025-10-13 19:53:48,330 | INFO     | ready for new job
[2025-10-13 21:54:33] 2025-10-13 19:53:48,330 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 21:54:33] 2025-10-13 19:53:48,331 | INFO     | ***************************************
[2025-10-13 21:54:33] 2025-10-13 19:53:48,331 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 21:54:33] 2025-10-13 19:53:48,331 | INFO     | ***************************************
[2025-10-13 21:54:33] 2025-10-13 19:53:48,331 | INFO     | 
[2025-10-13 21:54:33] 2025-10-13 19:53:48,331 | INFO     | architecture information:
[2025-10-13 21:54:33] 2025-10-13 19:53:48,332 | INFO     | executing command: cat /etc/os-release
[2025-10-13 21:54:33] 2025-10-13 19:53:48,340 | INFO     | cat /etc/os-release:
[2025-10-13 21:54:33] NAME="CentOS Linux"
[2025-10-13 21:54:33] VERSION="7 (Core)"
[2025-10-13 21:54:33] ID="centos"
[2025-10-13 21:54:33] ID_LIKE="rhel fedora"
[2025-10-13 21:54:33] VERSION_ID="7"
[2025-10-13 21:54:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 21:54:33] ANSI_COLOR="0;31"
[2025-10-13 21:54:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 21:54:33] HOME_URL="https://www.centos.org/"
[2025-10-13 21:54:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 21:54:33] 
[2025-10-13 21:54:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 21:54:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 21:54:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 21:54:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 21:54:33] 
[2025-10-13 21:54:33] 2025-10-13 19:53:48,341 | INFO     | ***************************************
[2025-10-13 21:54:33] 2025-10-13 19:53:48,844 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 21:54:33] 2025-10-13 19:53:48,857 | INFO     | sufficient remaining disk space (332520226816 B)
[2025-10-13 21:54:33] 2025-10-13 19:53:48,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 21:54:33] 2025-10-13 19:53:48,857 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 21:54:33] 2025-10-13 19:53:48,857 | INFO     | update_server=False
[2025-10-13 21:54:33] 2025-10-13 19:53:48,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 21:54:33] 2025-10-13 19:53:48,857 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:54:33] 2025-10-13 19:53:48,857 | INFO     | aborting loop
[2025-10-13 21:54:33] 2025-10-13 19:53:48,857 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 21:54:33] 2025-10-13 19:53:49,204 | INFO     | all payload control threads have been joined
[2025-10-13 21:54:33] 2025-10-13 19:53:49,234 | INFO     | all data control threads have been joined
[2025-10-13 21:54:33] 2025-10-13 19:53:49,863 | INFO     | [job] retrieve thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:49,863 | INFO     | [job] job monitor thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:49,903 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:49,951 | INFO     | [job] validate thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:49,966 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 21:54:33] 2025-10-13 19:53:49,990 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:50,085 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:50,129 | INFO     | [data] copytool_in thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:50,130 | INFO     | all job control threads have been joined
[2025-10-13 21:54:33] 2025-10-13 19:53:50,210 | INFO     | [payload] control thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:50,240 | INFO     | [data] control thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:50,724 | INFO     | [payload] validate_post thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:51,038 | INFO     | [payload] failed_post thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:51,136 | INFO     | [job] control thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:51,860 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:54:33] 2025-10-13 19:53:51,973 | INFO     | [data] copytool_out thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:52,864 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:52,865 | INFO     | [job] queue monitor thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:53:59,493 | INFO     | job.realtimelogging is not enabled
[2025-10-13 21:54:33] 2025-10-13 19:54:00,499 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 21:54:33] 2025-10-13 19:54:18,701 | INFO     | PID=3195354 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 21:54:33] 2025-10-13 19:54:18,701 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 21:54:33] 2025-10-13 19:54:18,701 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 21:54:33] 2025-10-13 19:54:18,701 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 21:54:33] 2025-10-13 19:54:27,113 | INFO     | [monitor] cgroup control has ended
[2025-10-13 21:54:33] 2025-10-13 19:54:28,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140392895706944)>', '<ExcThread(monitor, started 140392397788928)>']
[2025-10-13 21:54:33] 2025-10-13 19:54:28,747 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 21:54:33] 2025-10-13 19:54:28,747 | INFO     | [monitor] control thread has ended
[2025-10-13 21:54:33] 2025-10-13 19:54:33,488 | INFO     | all workflow threads have been joined
[2025-10-13 21:54:33] 2025-10-13 19:54:33,488 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 21:54:33] 2025-10-13 19:54:33,489 | INFO     | traces error code: 0
[2025-10-13 21:54:33] 2025-10-13 19:54:33,489 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 21:54:33] 2025-10-13 19:54:33,536 [wrapper] ==== pilot stdout END ====
[2025-10-13 21:54:33] 2025-10-13 19:54:33,539 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 21:54:33] 2025-10-13 19:54:33,542 [wrapper] pilotpid: 3195354
[2025-10-13 21:54:33] 2025-10-13 19:54:33,545 [wrapper] Pilot exit status: 0
[2025-10-13 21:54:33] 2025-10-13 19:54:33,552 [wrapper] pandaids: 6842660104
[2025-10-13 21:54:33] 2025-10-13 19:54:33,571 [wrapper] cleanup supervisor_pilot 3213691 3195355
[2025-10-13 21:54:33] 2025-10-13 19:54:33,573 [wrapper] Test setup, not cleaning
[2025-10-13 21:54:33] 2025-10-13 19:54:33,576 [wrapper] apfmon messages muted
[2025-10-13 21:54:33] 2025-10-13 19:54:33,578 [wrapper] ==== wrapper stdout END ====
[2025-10-13 21:54:33] 2025-10-13 19:54:33,580 [wrapper] ==== wrapper stderr END ====
[2025-10-13 21:54:33]  *** Error codes and diagnostics ***
[2025-10-13 21:54:33]     "exeErrorCode": 0,
[2025-10-13 21:54:33]     "exeErrorDiag": "",
[2025-10-13 21:54:33]     "pilotErrorCode": 0,
[2025-10-13 21:54:33]     "pilotErrorDiag": "",
[2025-10-13 21:54:33]  *** Listing of results directory ***
[2025-10-13 21:54:33] total 411912
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc      5112 Oct 13 08:50 queuedata.json
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc    557409 Oct 13 08:50 pilot3.tar.gz
[2025-10-13 21:54:33] -rwx------ 1 boinc boinc     36292 Oct 13 08:51 runpilot2-wrapper.sh
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc       100 Oct 13 20:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 21:54:33] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 20:22 run_atlas
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc       105 Oct 13 20:22 job.xml
[2025-10-13 21:54:33] -rw-r--r-- 2 boinc boinc 220955255 Oct 13 20:22 EVNT.46676267._000851.pool.root.1
[2025-10-13 21:54:33] -rw-r--r-- 2 boinc boinc    569686 Oct 13 20:22 input.tar.gz
[2025-10-13 21:54:33] -rw-r--r-- 2 boinc boinc     15120 Oct 13 20:22 start_atlas.sh
[2025-10-13 21:54:33] drwxrwx--x 2 boinc boinc      4096 Oct 13 20:22 shared
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc         0 Oct 13 20:22 boinc_setup_complete
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc      6200 Oct 13 20:22 init_data.xml
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc         0 Oct 13 20:22 boinc_lockfile
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc      2548 Oct 13 20:22 pandaJob.out
[2025-10-13 21:54:33] -rw------- 1 boinc boinc    972799 Oct 13 20:22 agis_schedconf.cvmfs.json
[2025-10-13 21:54:33] -rw------- 1 boinc boinc   1560580 Oct 13 20:22 agis_ddmendpoints.agis.ALL.json
[2025-10-13 21:54:33] drwx------ 5 boinc boinc      4096 Oct 13 20:22 pilot3
[2025-10-13 21:54:33] -rw------- 1 boinc boinc 194836898 Oct 13 21:53 HITS.46676269._096421.pool.root.1
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc       529 Oct 13 21:53 boinc_task_state.xml
[2025-10-13 21:54:33] -rw------- 1 boinc boinc      1016 Oct 13 21:53 memory_monitor_summary.json
[2025-10-13 21:54:33] -rw------- 1 boinc boinc    249869 Oct 13 21:53 log.46676269._096421.job.log.tgz.1
[2025-10-13 21:54:33] -rw------- 1 boinc boinc        95 Oct 13 21:53 pilot_heartbeat.json
[2025-10-13 21:54:33] -rw------- 1 boinc boinc      7767 Oct 13 21:53 heartbeat.json
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc      8192 Oct 13 21:54 boinc_mmap_file
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc        27 Oct 13 21:54 wrapper_checkpoint.txt
[2025-10-13 21:54:33] -rw------- 1 boinc boinc      4824 Oct 13 21:54 pilotlog.txt
[2025-10-13 21:54:33] -rw------- 1 boinc boinc    801173 Oct 13 21:54 log.46676269._096421.job.log.1
[2025-10-13 21:54:33] -rw------- 1 boinc boinc       357 Oct 13 21:54 output.list
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc       620 Oct 13 21:54 runtime_log
[2025-10-13 21:54:33] -rw------- 1 boinc boinc   1075200 Oct 13 21:54 result.tar.gz
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc      8797 Oct 13 21:54 runtime_log.err
[2025-10-13 21:54:33] -rw------- 1 boinc boinc       662 Oct 13 21:54 bgyNDm4ZRS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmGiVMDmoqon1n.diag
[2025-10-13 21:54:33] -rw-r--r-- 1 boinc boinc     12740 Oct 13 21:54 stderr.txt
[2025-10-13 21:54:33] HITS file was successfully produced:
[2025-10-13 21:54:33] -rw------- 1 boinc boinc 194836898 Oct 13 21:53 shared/HITS.pool.root.1
[2025-10-13 21:54:33]  *** Contents of shared directory: ***
[2025-10-13 21:54:33] total 407688
[2025-10-13 21:54:33] -rw-r--r-- 2 boinc boinc 220955255 Oct 13 20:22 ATLAS.root_0
[2025-10-13 21:54:33] -rw-r--r-- 2 boinc boinc    569686 Oct 13 20:22 input.tar.gz
[2025-10-13 21:54:33] -rw-r--r-- 2 boinc boinc     15120 Oct 13 20:22 start_atlas.sh
[2025-10-13 21:54:33] -rw------- 1 boinc boinc 194836898 Oct 13 21:53 HITS.pool.root.1
[2025-10-13 21:54:33] -rw------- 1 boinc boinc   1075200 Oct 13 21:54 result.tar.gz
21:54:35 (3191621): run_atlas exited; CPU time 15750.962561
21:54:35 (3191621): called boinc_finish(0)

</stderr_txt>
]]>

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