Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
04:30:28 (178354): wrapper (7.7.26015): starting
04:30:28 (178354): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 04:30:28] Arguments: --nthreads 12
[2025-10-13 04:30:28] Threads: 12
[2025-10-13 04:30:28] Checking for CVMFS
[2025-10-13 04:30:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:30:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:30:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:30:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:30:28] 2.13.2.0 3676992 330 56248 151656 1 188 16545682 16777217 916 130560 0 1244587 99.996 15025 2039 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-13 04:30:28] CVMFS is ok
[2025-10-13 04:30:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:30:28] Checking for apptainer binary...
[2025-10-13 04:30:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:30:28] Running /usr/bin/apptainer --version
[2025-10-13 04:30:28] apptainer version 1.3.0-bp160.1.36
[2025-10-13 04:30:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:30:28] boinc-runner
[2025-10-13 04:30:28] apptainer works
[2025-10-13 04:30:28] Set ATHENA_PROC_NUMBER=12
[2025-10-13 04:30:28] Set ATHENA_CORE_NUMBER=12
[2025-10-13 04:30:28] Starting ATLAS job with PandaID=6841070190
[2025-10-13 04:30:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:00:43]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:00:43]  protocol_id=None
[2025-10-13 05:00:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 05:00:43]  replicas=None
[2025-10-13 05:00:43]  scope=mc23_13p6TeV
[2025-10-13 05:00:43]  status=None
[2025-10-13 05:00:43]  status_code=0
[2025-10-13 05:00:43]  storage_token=
[2025-10-13 05:00:43]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-6841070190/log.46676269._093995.job.log.tgz.1
[2025-10-13 05:00:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/c0/log.46676269._093995.job.log.tgz.1
[2025-10-13 05:00:43]  workdir=None
[2025-10-13 05:00:43] ]
[2025-10-13 05:00:43] 2025-10-13 09:59:53,181 | INFO     | transferring file log.46676269._093995.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6841070190/log.46676269._093995.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 05:00:43] 2025-10-13 09:59:53,182 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6841070190/log.46676269._093995.job.log.tgz.1 /var/lib/boinc/slots/3/log.46676269._093995.job
[2025-10-13 05:00:43] 2025-10-13 09:59:53,195 | INFO     | adding to output.list: log.46676269._093995.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/c0/log.46676269._093995.job.log.tg
[2025-10-13 05:00:43] 2025-10-13 09:59:53,196 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:00:43] 2025-10-13 09:59:53,196 | INFO     | summary of transferred files:
[2025-10-13 05:00:43] 2025-10-13 09:59:53,196 | INFO     |  -- lfn=log.46676269._093995.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:00:43] 2025-10-13 09:59:53,196 | INFO     | stage-out finished correctly
[2025-10-13 05:00:43] 2025-10-13 09:59:53,231 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:00:43] 2025-10-13 09:59:54,047 | INFO     | monitor loop #138: job 0:6841070190 is in state 'finished'
[2025-10-13 05:00:43] 2025-10-13 09:59:54,048 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:00:43] 2025-10-13 09:59:55,119 | INFO     | time since job start (1761s) is within the limit (172800.0s)
[2025-10-13 05:00:43] 2025-10-13 09:59:55,514 | INFO     | job 6841070190 has state=finished
[2025-10-13 05:00:43] 2025-10-13 09:59:55,515 | INFO     | preparing for final server update for job 6841070190 in state='finished'
[2025-10-13 05:00:43] 2025-10-13 09:59:55,515 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:00:43] 2025-10-13 09:59:55,515 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:00:43] 2025-10-13 09:59:55,515 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:00:43] 2025-10-13 09:59:55,515 | INFO     | job 6841070190 has finished - writing final server update
[2025-10-13 05:00:43] 2025-10-13 09:59:55,515 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:00:43] 2025-10-13 09:59:55,516 | INFO     | executing command: lscpu
[2025-10-13 05:00:43] 2025-10-13 09:59:55,535 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:00:43] 2025-10-13 09:59:56,550 | INFO     | monitor loop #139: job 0:6841070190 is in state 'finished'
[2025-10-13 05:00:43] 2025-10-13 09:59:56,551 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:00:43] 2025-10-13 09:59:57,124 | INFO     | time since job start (1763s) is within the limit (172800.0s)
[2025-10-13 05:00:43] 2025-10-13 09:59:58,376 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 05:00:43] 2025-10-13 09:59:58,379 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4197.56828125
[2025-10-13 05:00:43] 2025-10-13 09:59:58,382 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6841070190/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:00:43] 2025-10-13 09:59:58,382 | INFO     | extracted standard info from prmon json
[2025-10-13 05:00:43] 2025-10-13 09:59:58,382 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:00:43] 2025-10-13 09:59:58,382 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:00:43] 2025-10-13 09:59:58,383 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:00:43] 2025-10-13 09:59:58,383 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:00:43] 2025-10-13 09:59:58,383 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:00:43] 2025-10-13 09:59:58,383 | INFO     | sum of square deviations: 3294945.5
[2025-10-13 05:00:43] 2025-10-13 09:59:58,383 | INFO     | sum of deviations: 129697742.49999994
[2025-10-13 05:00:43] 2025-10-13 09:59:58,383 | INFO     | mean x: 1760348797.5
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | mean y: 2994808.8636363638
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | -- intersect: -69288975285.43369
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | intersect: -69288975285.43369
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | chi2: 0.0055733600639821905
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | -- intersect: -69288975285.43369
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | current memory leak: 39.36 B/s (using 22 data points, chi2=0.01)
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | could have reported an average CPU frequency of 3932 MHz (4 samples)
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | ..............................
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | . Timing measurements:
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | . get job = 0 s
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | . initial setup = 2 s
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | . payload setup = 2 s
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | . stage-in = 0 s
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | . payload execution = 1739 s
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | . stage-out = 0 s
[2025-10-13 05:00:43] 2025-10-13 09:59:58,384 | INFO     | . log creation = 0 s
[2025-10-13 05:00:43] 2025-10-13 09:59:58,385 | INFO     | ..............................
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | 
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | job summary report
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | --------------------------------------------------
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | PanDA job id: 6841070190
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | task id: 46676269
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | errors: (none)
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | pilot state: finished 
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | transexitcode: 0
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | exeerrorcode: 0
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | exeerrordiag: 
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | exitcode: 0
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | exitmsg: OK
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | cpuconsumptiontime: 19062 s
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | nevents: 400
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | neventsw: 0
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | pid: 189105
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | pgrp: 189105
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | corecount: 12
[2025-10-13 05:00:43] 2025-10-13 09:59:58,708 | INFO     | event service: False
[2025-10-13 05:00:43] 2025-10-13 09:59:58,709 | INFO     | sizes: {0: 2348857, 2: 2349119, 11: 2349147, 1745: 2374046, 1746: 2383099, 1751: 2383237}
[2025-10-13 05:00:43] 2025-10-13 09:59:58,709 | INFO     | --------------------------------------------------
[2025-10-13 05:00:43] 2025-10-13 09:59:58,709 | INFO     | 
[2025-10-13 05:00:43] 2025-10-13 09:59:58,709 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | job 6841070190 has completed (purged errors)
[2025-10-13 05:00:43] 2025-10-13 09:59:58,722 | INFO     | overall cleanup function is called
[2025-10-13 05:00:43] 2025-10-13 09:59:59,730 | INFO     | --- collectZombieJob: --- 10, [189105]
[2025-10-13 05:00:43] 2025-10-13 09:59:59,730 | INFO     | zombie collector waiting for pid 189105
[2025-10-13 05:00:43] 2025-10-13 09:59:59,730 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:00:43] 2025-10-13 09:59:59,730 | INFO     | collected zombie processes
[2025-10-13 05:00:43] 2025-10-13 09:59:59,730 | INFO     | will attempt to kill all subprocesses of pid=189105
[2025-10-13 05:00:43] 2025-10-13 09:59:59,796 | INFO     | process IDs to be killed: [189105] (in reverse order)
[2025-10-13 05:00:43] 2025-10-13 09:59:59,828 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:00:43] 2025-10-13 09:59:59,828 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:00:43] 2025-10-13 09:59:59,832 | INFO     | did not find any defunct processes belonging to 189105
[2025-10-13 05:00:43] 2025-10-13 09:59:59,834 | INFO     | did not find any defunct processes belonging to 189105
[2025-10-13 05:00:43] 2025-10-13 09:59:59,835 | INFO     | ready for new job
[2025-10-13 05:00:43] 2025-10-13 09:59:59,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:00:43] 2025-10-13 09:59:59,836 | INFO     | ***************************************
[2025-10-13 05:00:43] 2025-10-13 09:59:59,836 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:00:43] 2025-10-13 09:59:59,836 | INFO     | ***************************************
[2025-10-13 05:00:43] 2025-10-13 09:59:59,836 | INFO     | 
[2025-10-13 05:00:43] 2025-10-13 09:59:59,837 | INFO     | architecture information:
[2025-10-13 05:00:43] 2025-10-13 09:59:59,837 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:00:43] 2025-10-13 09:59:59,846 | INFO     | cat /etc/os-release:
[2025-10-13 05:00:43] NAME="CentOS Linux"
[2025-10-13 05:00:43] VERSION="7 (Core)"
[2025-10-13 05:00:43] ID="centos"
[2025-10-13 05:00:43] ID_LIKE="rhel fedora"
[2025-10-13 05:00:43] VERSION_ID="7"
[2025-10-13 05:00:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:00:43] ANSI_COLOR="0;31"
[2025-10-13 05:00:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:00:43] HOME_URL="https://www.centos.org/"
[2025-10-13 05:00:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:00:43] 
[2025-10-13 05:00:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:00:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:00:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:00:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:00:43] 
[2025-10-13 05:00:43] 2025-10-13 09:59:59,846 | INFO     | ***************************************
[2025-10-13 05:00:43] 2025-10-13 10:00:00,349 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-13 05:00:43] 2025-10-13 10:00:00,360 | INFO     | sufficient remaining disk space (3854631436288 B)
[2025-10-13 05:00:43] 2025-10-13 10:00:00,360 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:00:43] 2025-10-13 10:00:00,360 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:00:43] 2025-10-13 10:00:00,361 | INFO     | update_server=False
[2025-10-13 05:00:43] 2025-10-13 10:00:00,361 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:00:43] 2025-10-13 10:00:00,361 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:00:43] 2025-10-13 10:00:00,361 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:00:43] 2025-10-13 10:00:00,361 | INFO     | aborting loop
[2025-10-13 05:00:43] 2025-10-13 10:00:00,498 | INFO     | all job control threads have been joined
[2025-10-13 05:00:43] 2025-10-13 10:00:01,012 | INFO     | all data control threads have been joined
[2025-10-13 05:00:43] 2025-10-13 10:00:01,240 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:00:43] 2025-10-13 10:00:01,365 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:01,366 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:01,366 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:01,481 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:01,504 | INFO     | [job] control thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:01,644 | INFO     | all payload control threads have been joined
[2025-10-13 05:00:43] 2025-10-13 10:00:01,722 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:01,739 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:01,985 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:02,018 | INFO     | [data] control thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:02,649 | INFO     | [payload] control thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:02,679 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:02,698 | INFO     | [job] validate thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:02,817 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:03,245 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:03,772 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:00:43] 2025-10-13 10:00:07,778 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:11,109 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:00:43] 2025-10-13 10:00:12,114 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:00:43] 2025-10-13 10:00:30,270 | INFO     | PID=182239 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 05:00:43] 2025-10-13 10:00:30,270 | INFO     | .. there are 2 such processes running
[2025-10-13 05:00:43] 2025-10-13 10:00:30,270 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:00:43] 2025-10-13 10:00:30,270 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:00:43] 2025-10-13 10:00:30,270 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:00:43] 2025-10-13 10:00:31,930 [wrapper] supervise_pilot (15 min periods counter: 3)
[2025-10-13 05:00:43] 2025-10-13 10:00:37,106 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:00:43] 2025-10-13 10:00:38,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139782909839168)>', '<ExcThread(monitor, started 139782562756352)>']
[2025-10-13 05:00:43] 2025-10-13 10:00:39,312 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:00:43] 2025-10-13 10:00:39,312 | INFO     | [monitor] control thread has ended
[2025-10-13 05:00:43] 2025-10-13 10:00:43,332 | INFO     | all workflow threads have been joined
[2025-10-13 05:00:43] 2025-10-13 10:00:43,333 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:00:43] 2025-10-13 10:00:43,333 | INFO     | traces error code: 0
[2025-10-13 05:00:43] 2025-10-13 10:00:43,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:00:43] 2025-10-13 10:00:43,422 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:00:43] 2025-10-13 10:00:43,424 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:00:43] 2025-10-13 10:00:43,426 [wrapper] pilotpid: 182239
[2025-10-13 05:00:43] 2025-10-13 10:00:43,427 [wrapper] Pilot exit status: 0
[2025-10-13 05:00:43] 2025-10-13 10:00:43,433 [wrapper] pandaids: 6841070190
[2025-10-13 05:00:43] 2025-10-13 10:00:43,454 [wrapper] cleanup supervisor_pilot  239886 182240
[2025-10-13 05:00:43] 2025-10-13 10:00:43,456 [wrapper] Test setup, not cleaning
[2025-10-13 05:00:43] 2025-10-13 10:00:43,458 [wrapper] apfmon messages muted
[2025-10-13 05:00:43] 2025-10-13 10:00:43,459 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:00:43] 2025-10-13 10:00:43,460 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:00:43]  *** Error codes and diagnostics ***
[2025-10-13 05:00:43]     "exeErrorCode": 0,
[2025-10-13 05:00:43]     "exeErrorDiag": "",
[2025-10-13 05:00:43]     "pilotErrorCode": 0,
[2025-10-13 05:00:43]     "pilotErrorDiag": "",
[2025-10-13 05:00:43]  *** Listing of results directory ***
[2025-10-13 05:00:43] total 422788
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc    557409 Oct 12 20:18 pilot3.tar.gz
[2025-10-13 05:00:43] -rwx------. 1 boinc boinc     36292 Oct 12 20:19 runpilot2-wrapper.sh
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc      5112 Oct 12 20:19 queuedata.json
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc       100 Oct 13 04:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:00:43] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 04:30 run_atlas
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc       105 Oct 13 04:30 job.xml
[2025-10-13 05:00:43] -rw-r--r--. 2 boinc boinc     15120 Oct 13 04:30 start_atlas.sh
[2025-10-13 05:00:43] drwxrwx--x. 1 boinc boinc        76 Oct 13 04:30 shared
[2025-10-13 05:00:43] -rw-r--r--. 2 boinc boinc    569678 Oct 13 04:30 input.tar.gz
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc     10052 Oct 13 04:30 init_data.xml
[2025-10-13 05:00:43] -rw-r--r--. 2 boinc boinc 224971093 Oct 13 04:30 EVNT.46676267._004726.pool.root.1
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc         0 Oct 13 04:30 boinc_setup_complete
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc         0 Oct 13 04:30 boinc_lockfile
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc      2550 Oct 13 04:30 pandaJob.out
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc    972849 Oct 13 04:30 agis_schedconf.cvmfs.json
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc   1560580 Oct 13 04:30 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:00:43] drwx------. 1 boinc boinc       414 Oct 13 04:30 pilot3
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc       529 Oct 13 04:59 boinc_task_state.xml
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc 202777194 Oct 13 04:59 HITS.46676269._093995.pool.root.1
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc        95 Oct 13 04:59 pilot_heartbeat.json
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc      1028 Oct 13 04:59 memory_monitor_summary.json
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc    352667 Oct 13 04:59 log.46676269._093995.job.log.tgz.1
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc      7791 Oct 13 04:59 heartbeat.json
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc        27 Oct 13 05:00 wrapper_checkpoint.txt
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc      8192 Oct 13 05:00 boinc_mmap_file
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc      4896 Oct 13 05:00 pilotlog.txt
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc    297792 Oct 13 05:00 log.46676269._093995.job.log.1
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc       357 Oct 13 05:00 output.list
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc       620 Oct 13 05:00 runtime_log
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc    665600 Oct 13 05:00 result.tar.gz
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc      8727 Oct 13 05:00 runtime_log.err
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc       649 Oct 13 05:00 8jYNDmUOMS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmpRVMDmXB5Qcn.diag
[2025-10-13 05:00:43] -rw-r--r--. 1 boinc boinc     21405 Oct 13 05:00 stderr.txt
[2025-10-13 05:00:43] HITS file was successfully produced:
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc 202777194 Oct 13 04:59 shared/HITS.pool.root.1
[2025-10-13 05:00:43]  *** Contents of shared directory: ***
[2025-10-13 05:00:43] total 418956
[2025-10-13 05:00:43] -rw-r--r--. 2 boinc boinc     15120 Oct 13 04:30 start_atlas.sh
[2025-10-13 05:00:43] -rw-r--r--. 2 boinc boinc    569678 Oct 13 04:30 input.tar.gz
[2025-10-13 05:00:43] -rw-r--r--. 2 boinc boinc 224971093 Oct 13 04:30 ATLAS.root_0
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc 202777194 Oct 13 04:59 HITS.pool.root.1
[2025-10-13 05:00:43] -rw-------. 1 boinc boinc    665600 Oct 13 05:00 result.tar.gz
05:00:44 (178354): run_atlas exited; CPU time 19070.131388
05:00:44 (178354): called boinc_finish(0)

</stderr_txt>
]]>

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