Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:35:00 (2412987): wrapper (7.7.26015): starting
20:35:00 (2412987): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 20:35:00] Arguments: --nthreads 3
[2025-10-13 20:35:00] Threads: 3
[2025-10-13 20:35:00] Checking for CVMFS
[2025-10-13 20:35:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 20:35:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 20:35:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 20:35:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 20:35:00] 2.9.2.0 572386 5945 85600 151670 1 57 21847679 36864000 0 130560 0 4840092 99.991 206943 842 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 20:35:00] CVMFS is ok
[2025-10-13 20:35:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 20:35:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 20:35:00] Further information can be found at the LHC@home message board.
[2025-10-13 20:35:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 20:35:00] Checking for apptainer binary...
[2025-10-13 20:35:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 20:35:00] Running /usr/bin/apptainer --version
[2025-10-13 20:35:00] apptainer version 1.4.1-1.1
[2025-10-13 20:35:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 20:35:00] thA354b
[2025-10-13 20:35:00] apptainer works
[2025-10-13 20:35:00] Set ATHENA_PROC_NUMBER=3
[2025-10-13 20:35:00] Set ATHENA_CORE_NUMBER=3
[2025-10-13 20:35:00] Starting ATLAS job with PandaID=6840080964
[2025-10-13 20:35:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 21:56:17]  *** The last 200 lines of the pilot log: ***
[2025-10-13 21:56:17]  status=None
[2025-10-13 21:56:17]  status_code=0
[2025-10-13 21:56:17]  storage_token=
[2025-10-13 21:56:17]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6840080964/log.46676269._079336.job.log.tgz.1
[2025-10-13 21:56:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/d2/log.46676269._079336.job.log.tgz.1
[2025-10-13 21:56:17]  workdir=None
[2025-10-13 21:56:17] ]
[2025-10-13 21:56:17] 2025-10-13 19:55:05,159 | INFO     | transferring file log.46676269._079336.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6840080964/log.46676269._079336.job.log.tgz.1 to /local/data/boinc/
[2025-10-13 21:56:17] 2025-10-13 19:55:05,159 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6840080964/log.46676269._079336.job.log.tgz.1 /local/data/boinc/slots/0/log.46676269._0793
[2025-10-13 21:56:17] 2025-10-13 19:55:05,171 | INFO     | adding to output.list: log.46676269._079336.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/d2/log.46676269._079336.job.log.tg
[2025-10-13 21:56:17] 2025-10-13 19:55:05,172 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 21:56:17] 2025-10-13 19:55:05,172 | INFO     | summary of transferred files:
[2025-10-13 21:56:17] 2025-10-13 19:55:05,172 | INFO     |  -- lfn=log.46676269._079336.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 21:56:17] 2025-10-13 19:55:05,172 | INFO     | stage-out finished correctly
[2025-10-13 21:56:17] 2025-10-13 19:55:06,042 | INFO     | time since job start (4800s) is within the limit (172800.0s)
[2025-10-13 21:56:17] 2025-10-13 19:55:06,749 | INFO     | monitor loop #369: job 0:6840080964 is in state 'finished'
[2025-10-13 21:56:17] 2025-10-13 19:55:06,749 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:56:17] 2025-10-13 19:55:08,048 | INFO     | time since job start (4802s) is within the limit (172800.0s)
[2025-10-13 21:56:17] 2025-10-13 19:55:08,349 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 21:56:17] 2025-10-13 19:55:09,253 | INFO     | monitor loop #370: job 0:6840080964 is in state 'finished'
[2025-10-13 21:56:17] 2025-10-13 19:55:09,253 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:56:17] 2025-10-13 19:55:10,055 | INFO     | time since job start (4804s) is within the limit (172800.0s)
[2025-10-13 21:56:17] 2025-10-13 19:55:10,766 | INFO     | job 6840080964 has state=finished
[2025-10-13 21:56:17] 2025-10-13 19:55:10,766 | INFO     | preparing for final server update for job 6840080964 in state='finished'
[2025-10-13 21:56:17] 2025-10-13 19:55:10,767 | INFO     | this job has now completed (state=finished)
[2025-10-13 21:56:17] 2025-10-13 19:55:10,767 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 21:56:17] 2025-10-13 19:55:10,767 | INFO     | log transfer has been attempted: DONE
[2025-10-13 21:56:17] 2025-10-13 19:55:10,767 | INFO     | job 6840080964 has finished - writing final server update
[2025-10-13 21:56:17] 2025-10-13 19:55:10,767 | INFO     | total number of processed events: 400 (read)
[2025-10-13 21:56:17] 2025-10-13 19:55:10,768 | INFO     | executing command: lscpu
[2025-10-13 21:56:17] 2025-10-13 19:55:10,783 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 21:56:17] 2025-10-13 19:55:11,757 | INFO     | monitor loop #371: job 0:6840080964 is in state 'finished'
[2025-10-13 21:56:17] 2025-10-13 19:55:11,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:56:17] 2025-10-13 19:55:12,060 | INFO     | time since job start (4806s) is within the limit (172800.0s)
[2025-10-13 21:56:17] 2025-10-13 19:55:14,065 | INFO     | time since job start (4808s) is within the limit (172800.0s)
[2025-10-13 21:56:17] 2025-10-13 19:55:14,259 | INFO     | monitor loop #372: job 0:6840080964 is in state 'finished'
[2025-10-13 21:56:17] 2025-10-13 19:55:14,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:56:17] 2025-10-13 19:55:15,354 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 21:56:17] 2025-10-13 19:55:15,356 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3493.7973333333334
[2025-10-13 21:56:17] 2025-10-13 19:55:15,357 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6840080964/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 21:56:17] 2025-10-13 19:55:15,357 | INFO     | extracted standard info from prmon json
[2025-10-13 21:56:17] 2025-10-13 19:55:15,357 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 21:56:17] 2025-10-13 19:55:15,357 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 21:56:17] 2025-10-13 19:55:15,357 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 21:56:17] 2025-10-13 19:55:15,357 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 21:56:17] 2025-10-13 19:55:15,358 | INFO     | fitting pss+swap vs Time
[2025-10-13 21:56:17] 2025-10-13 19:55:15,358 | INFO     | sum of square deviations: 115715658.0
[2025-10-13 21:56:17] 2025-10-13 19:55:15,358 | INFO     | sum of deviations: -11738694819.999998
[2025-10-13 21:56:17] 2025-10-13 19:55:15,358 | INFO     | mean x: 1760382995.5
[2025-10-13 21:56:17] 2025-10-13 19:55:15,358 | INFO     | mean y: 2483877.3333333335
[2025-10-13 21:56:17] 2025-10-13 19:55:15,358 | INFO     | -- intersect: 178583318205.66537
[2025-10-13 21:56:17] 2025-10-13 19:55:15,358 | INFO     | intersect: 178583318205.66537
[2025-10-13 21:56:17] 2025-10-13 19:55:15,358 | INFO     | chi2: 0.04788617974841952
[2025-10-13 21:56:17] 2025-10-13 19:55:15,358 | INFO     | -- intersect: 178583318205.66537
[2025-10-13 21:56:17] 2025-10-13 19:55:15,358 | INFO     | current memory leak: -101.44 B/s (using 72 data points, chi2=0.05)
[2025-10-13 21:56:17] 2025-10-13 19:55:15,358 | INFO     | could have reported an average CPU frequency of 3875 MHz (6 samples)
[2025-10-13 21:56:17] 2025-10-13 19:55:15,358 | INFO     | ..............................
[2025-10-13 21:56:17] 2025-10-13 19:55:15,358 | INFO     | . Timing measurements:
[2025-10-13 21:56:17] 2025-10-13 19:55:15,359 | INFO     | . get job = 0 s
[2025-10-13 21:56:17] 2025-10-13 19:55:15,359 | INFO     | . initial setup = 1 s
[2025-10-13 21:56:17] 2025-10-13 19:55:15,359 | INFO     | . payload setup = 2 s
[2025-10-13 21:56:17] 2025-10-13 19:55:15,359 | INFO     | . stage-in = 0 s
[2025-10-13 21:56:17] 2025-10-13 19:55:15,359 | INFO     | . payload execution = 4778 s
[2025-10-13 21:56:17] 2025-10-13 19:55:15,359 | INFO     | . stage-out = 0 s
[2025-10-13 21:56:17] 2025-10-13 19:55:15,359 | INFO     | . log creation = 0 s
[2025-10-13 21:56:17] 2025-10-13 19:55:15,359 | INFO     | ..............................
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | 
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | job summary report
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | --------------------------------------------------
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | PanDA job id: 6840080964
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | task id: 46676269
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | errors: (none)
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | pilot state: finished 
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | transexitcode: 0
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | exeerrorcode: 0
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | exeerrordiag: 
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | exitcode: 0
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | exitmsg: OK
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | cpuconsumptiontime: 13739 s
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | nevents: 400
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | neventsw: 0
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | pid: 2423137
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | pgrp: 2423137
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | corecount: 3
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | event service: False
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | sizes: {0: 2348810, 2: 2349072, 11: 2349100, 4784: 2375486, 4785: 2375485, 4786: 2384545, 4789: 2384729, 4796: 2384923}
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | --------------------------------------------------
[2025-10-13 21:56:17] 2025-10-13 19:55:15,390 | INFO     | 
[2025-10-13 21:56:17] 2025-10-13 19:55:15,391 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-13 21:56:17] 2025-10-13 19:55:15,401 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | job 6840080964 has completed (purged errors)
[2025-10-13 21:56:17] 2025-10-13 19:55:15,402 | INFO     | overall cleanup function is called
[2025-10-13 21:56:17] 2025-10-13 19:55:16,409 | INFO     | --- collectZombieJob: --- 10, [2423137]
[2025-10-13 21:56:17] 2025-10-13 19:55:16,409 | INFO     | zombie collector waiting for pid 2423137
[2025-10-13 21:56:17] 2025-10-13 19:55:16,409 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 21:56:17] 2025-10-13 19:55:16,409 | INFO     | collected zombie processes
[2025-10-13 21:56:17] 2025-10-13 19:55:16,409 | INFO     | will attempt to kill all subprocesses of pid=2423137
[2025-10-13 21:56:17] 2025-10-13 19:55:16,450 | INFO     | process IDs to be killed: [2423137] (in reverse order)
[2025-10-13 21:56:17] 2025-10-13 19:55:16,473 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 21:56:17] 2025-10-13 19:55:16,473 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 21:56:17] 2025-10-13 19:55:16,475 | INFO     | did not find any defunct processes belonging to 2423137
[2025-10-13 21:56:17] 2025-10-13 19:55:16,476 | INFO     | did not find any defunct processes belonging to 2423137
[2025-10-13 21:56:17] 2025-10-13 19:55:16,476 | INFO     | ready for new job
[2025-10-13 21:56:17] 2025-10-13 19:55:16,476 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 21:56:17] 2025-10-13 19:55:16,477 | INFO     | ***************************************
[2025-10-13 21:56:17] 2025-10-13 19:55:16,477 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 21:56:17] 2025-10-13 19:55:16,477 | INFO     | ***************************************
[2025-10-13 21:56:17] 2025-10-13 19:55:16,477 | INFO     | 
[2025-10-13 21:56:17] 2025-10-13 19:55:16,477 | INFO     | architecture information:
[2025-10-13 21:56:17] 2025-10-13 19:55:16,477 | INFO     | executing command: cat /etc/os-release
[2025-10-13 21:56:17] 2025-10-13 19:55:16,486 | INFO     | cat /etc/os-release:
[2025-10-13 21:56:17] NAME="CentOS Linux"
[2025-10-13 21:56:17] VERSION="7 (Core)"
[2025-10-13 21:56:17] ID="centos"
[2025-10-13 21:56:17] ID_LIKE="rhel fedora"
[2025-10-13 21:56:17] VERSION_ID="7"
[2025-10-13 21:56:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 21:56:17] ANSI_COLOR="0;31"
[2025-10-13 21:56:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 21:56:17] HOME_URL="https://www.centos.org/"
[2025-10-13 21:56:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 21:56:17] 
[2025-10-13 21:56:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 21:56:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 21:56:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 21:56:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 21:56:17] 
[2025-10-13 21:56:17] 2025-10-13 19:55:16,486 | INFO     | ***************************************
[2025-10-13 21:56:17] 2025-10-13 19:55:16,989 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 21:56:17] 2025-10-13 19:55:17,001 | INFO     | sufficient remaining disk space (339928416256 B)
[2025-10-13 21:56:17] 2025-10-13 19:55:17,002 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 21:56:17] 2025-10-13 19:55:17,002 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 21:56:17] 2025-10-13 19:55:17,002 | INFO     | update_server=False
[2025-10-13 21:56:17] 2025-10-13 19:55:17,002 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 21:56:17] 2025-10-13 19:55:17,002 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:56:17] 2025-10-13 19:55:17,067 | INFO     | all job control threads have been joined
[2025-10-13 21:56:17] 2025-10-13 19:55:17,467 | INFO     | all data control threads have been joined
[2025-10-13 21:56:17] 2025-10-13 19:55:17,768 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:56:17] 2025-10-13 19:55:17,768 | INFO     | aborting loop
[2025-10-13 21:56:17] 2025-10-13 19:55:17,873 | INFO     | all payload control threads have been joined
[2025-10-13 21:56:17] 2025-10-13 19:55:18,007 | INFO     | [job] retrieve thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:18,007 | INFO     | [job] queue monitor thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:18,073 | INFO     | [job] control thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:18,158 | INFO     | [data] copytool_in thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:18,215 | INFO     | [payload] validate_post thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:18,222 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 21:56:17] 2025-10-13 19:55:18,427 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:18,473 | INFO     | [data] control thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:18,634 | INFO     | [job] validate thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:18,717 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:18,774 | INFO     | [job] job monitor thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:18,778 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:18,879 | INFO     | [payload] control thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:18,894 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 21:56:17] 2025-10-13 19:55:19,295 | INFO     | [payload] failed_post thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:19,425 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:20,228 | INFO     | [data] copytool_out thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:22,901 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 21:56:17] 2025-10-13 19:55:47,181 | INFO     | PID=2416708 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 21:56:17] 2025-10-13 19:55:47,181 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 21:56:17] 2025-10-13 19:55:47,181 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 21:56:17] 2025-10-13 19:55:47,181 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 21:56:17] 2025-10-13 19:56:11,282 | INFO     | [monitor] cgroup control has ended
[2025-10-13 21:56:17] 2025-10-13 19:56:12,434 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140493273847616)>', '<ExcThread(monitor, started 140492784256768)>']
[2025-10-13 21:56:17] 2025-10-13 19:56:13,316 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 21:56:17] 2025-10-13 19:56:13,316 | INFO     | [monitor] control thread has ended
[2025-10-13 21:56:17] 2025-10-13 19:56:17,441 | INFO     | all workflow threads have been joined
[2025-10-13 21:56:17] 2025-10-13 19:56:17,442 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 21:56:17] 2025-10-13 19:56:17,442 | INFO     | traces error code: 0
[2025-10-13 21:56:17] 2025-10-13 19:56:17,442 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 21:56:17] 2025-10-13 19:56:17,493 [wrapper] ==== pilot stdout END ====
[2025-10-13 21:56:17] 2025-10-13 19:56:17,495 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 21:56:17] 2025-10-13 19:56:17,498 [wrapper] pilotpid: 2416708
[2025-10-13 21:56:17] 2025-10-13 19:56:17,500 [wrapper] Pilot exit status: 0
[2025-10-13 21:56:17] 2025-10-13 19:56:17,507 [wrapper] pandaids: 6840080964
[2025-10-13 21:56:17] 2025-10-13 19:56:17,523 [wrapper] cleanup supervisor_pilot 2434948 2416709
[2025-10-13 21:56:17] 2025-10-13 19:56:17,525 [wrapper] Test setup, not cleaning
[2025-10-13 21:56:17] 2025-10-13 19:56:17,528 [wrapper] apfmon messages muted
[2025-10-13 21:56:17] 2025-10-13 19:56:17,530 [wrapper] ==== wrapper stdout END ====
[2025-10-13 21:56:17] 2025-10-13 19:56:17,532 [wrapper] ==== wrapper stderr END ====
[2025-10-13 21:56:17]  *** Error codes and diagnostics ***
[2025-10-13 21:56:17]     "exeErrorCode": 0,
[2025-10-13 21:56:17]     "exeErrorDiag": "",
[2025-10-13 21:56:17]     "pilotErrorCode": 0,
[2025-10-13 21:56:17]     "pilotErrorDiag": "",
[2025-10-13 21:56:17]  *** Listing of results directory ***
[2025-10-13 21:56:17] total 410484
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc    557409 Oct 12 15:05 pilot3.tar.gz
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc      5112 Oct 12 15:17 queuedata.json
[2025-10-13 21:56:17] -rwx------ 1 boinc boinc     36292 Oct 12 15:17 runpilot2-wrapper.sh
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc       100 Oct 13 20:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 21:56:17] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 20:35 run_atlas
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc       105 Oct 13 20:35 job.xml
[2025-10-13 21:56:17] -rw-r--r-- 2 boinc boinc 220220051 Oct 13 20:35 EVNT.46676267._001531.pool.root.1
[2025-10-13 21:56:17] -rw-r--r-- 2 boinc boinc    569683 Oct 13 20:35 input.tar.gz
[2025-10-13 21:56:17] -rw-r--r-- 2 boinc boinc     15120 Oct 13 20:35 start_atlas.sh
[2025-10-13 21:56:17] drwxrwx--x 2 boinc boinc      4096 Oct 13 20:35 shared
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc         0 Oct 13 20:35 boinc_setup_complete
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc      6441 Oct 13 20:35 init_data.xml
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc         0 Oct 13 20:35 boinc_lockfile
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc      2550 Oct 13 20:35 pandaJob.out
[2025-10-13 21:56:17] -rw------- 1 boinc boinc    972799 Oct 13 20:35 agis_schedconf.cvmfs.json
[2025-10-13 21:56:17] -rw------- 1 boinc boinc   1560580 Oct 13 20:35 agis_ddmendpoints.agis.ALL.json
[2025-10-13 21:56:17] drwx------ 5 boinc boinc      4096 Oct 13 20:35 pilot3
[2025-10-13 21:56:17] -rw------- 1 boinc boinc 194300623 Oct 13 21:54 HITS.46676269._079336.pool.root.1
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc       529 Oct 13 21:54 boinc_task_state.xml
[2025-10-13 21:56:17] -rw------- 1 boinc boinc      1018 Oct 13 21:55 memory_monitor_summary.json
[2025-10-13 21:56:17] -rw------- 1 boinc boinc    250762 Oct 13 21:55 log.46676269._079336.job.log.tgz.1
[2025-10-13 21:56:17] -rw------- 1 boinc boinc      7766 Oct 13 21:55 heartbeat.json
[2025-10-13 21:56:17] -rw------- 1 boinc boinc        95 Oct 13 21:55 pilot_heartbeat.json
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc      8192 Oct 13 21:56 boinc_mmap_file
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc        27 Oct 13 21:56 wrapper_checkpoint.txt
[2025-10-13 21:56:17] -rw------- 1 boinc boinc      4752 Oct 13 21:56 pilotlog.txt
[2025-10-13 21:56:17] -rw------- 1 boinc boinc    707740 Oct 13 21:56 log.46676269._079336.job.log.1
[2025-10-13 21:56:17] -rw------- 1 boinc boinc       357 Oct 13 21:56 output.list
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc       620 Oct 13 21:56 runtime_log
[2025-10-13 21:56:17] -rw------- 1 boinc boinc    972800 Oct 13 21:56 result.tar.gz
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc      8782 Oct 13 21:56 runtime_log.err
[2025-10-13 21:56:17] -rw------- 1 boinc boinc       659 Oct 13 21:56 2CyLDmO8AS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQzjNDmx5V2Xn.diag
[2025-10-13 21:56:17] -rw-r--r-- 1 boinc boinc     22052 Oct 13 21:56 stderr.txt
[2025-10-13 21:56:17] HITS file was successfully produced:
[2025-10-13 21:56:17] -rw------- 1 boinc boinc 194300623 Oct 13 21:54 shared/HITS.pool.root.1
[2025-10-13 21:56:17]  *** Contents of shared directory: ***
[2025-10-13 21:56:17] total 406344
[2025-10-13 21:56:17] -rw-r--r-- 2 boinc boinc 220220051 Oct 13 20:35 ATLAS.root_0
[2025-10-13 21:56:17] -rw-r--r-- 2 boinc boinc    569683 Oct 13 20:35 input.tar.gz
[2025-10-13 21:56:17] -rw-r--r-- 2 boinc boinc     15120 Oct 13 20:35 start_atlas.sh
[2025-10-13 21:56:17] -rw------- 1 boinc boinc 194300623 Oct 13 21:54 HITS.pool.root.1
[2025-10-13 21:56:17] -rw------- 1 boinc boinc    972800 Oct 13 21:56 result.tar.gz
21:56:19 (2412987): run_atlas exited; CPU time 13755.663358
21:56:19 (2412987): called boinc_finish(0)

</stderr_txt>
]]>

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