Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:52:08 (4103159): wrapper (7.7.26015): starting
20:52:08 (4103159): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 20:52:08] Arguments: --nthreads 4
[2025-10-13 20:52:08] Threads: 4
[2025-10-13 20:52:08] Checking for CVMFS
[2025-10-13 20:52:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 20:52:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 20:52:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 20:52:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 20:52:08] 2.9.2.0 1695166 6155 96252 151670 1 57 28248744 36864000 0 130560 0 6293060 99.993 207375 790 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 20:52:08] CVMFS is ok
[2025-10-13 20:52:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 20:52:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 20:52:08] Further information can be found at the LHC@home message board.
[2025-10-13 20:52:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 20:52:08] Checking for apptainer binary...
[2025-10-13 20:52:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 20:52:08] Running /usr/bin/apptainer --version
[2025-10-13 20:52:08] apptainer version 1.4.1-1.1
[2025-10-13 20:52:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 20:52:08] magicA244a
[2025-10-13 20:52:08] apptainer works
[2025-10-13 20:52:08] Set ATHENA_PROC_NUMBER=4
[2025-10-13 20:52:08] Set ATHENA_CORE_NUMBER=4
[2025-10-13 20:52:08] Starting ATLAS job with PandaID=6841124583
[2025-10-13 20:52:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 21:55:25]  *** The last 200 lines of the pilot log: ***
[2025-10-13 21:55:25] 2025-10-13 19:54:48,763 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 21:55:25] 2025-10-13 19:54:48,763 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 21:55:25] 2025-10-13 19:54:48,763 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 21:55:25] 2025-10-13 19:54:48,763 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 21:55:25] 2025-10-13 19:54:48,763 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 21:55:25] 2025-10-13 19:54:48,763 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 21:55:25] 2025-10-13 19:54:48,763 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 21:55:25] 2025-10-13 19:54:48,763 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 21:55:25] 2025-10-13 19:54:48,763 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 21:55:25] 2025-10-13 19:54:48,763 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 21:55:25] 2025-10-13 19:54:48,763 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 21:55:25] 2025-10-13 19:54:48,763 | INFO     | job 6841124583 has completed (purged errors)
[2025-10-13 21:55:25] 2025-10-13 19:54:48,764 | INFO     | overall cleanup function is called
[2025-10-13 21:55:25] 2025-10-13 19:54:49,768 | INFO     | --- collectZombieJob: --- 10, [4113495]
[2025-10-13 21:55:25] 2025-10-13 19:54:49,768 | INFO     | zombie collector waiting for pid 4113495
[2025-10-13 21:55:25] 2025-10-13 19:54:49,769 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 21:55:25] 2025-10-13 19:54:49,769 | INFO     | collected zombie processes
[2025-10-13 21:55:25] 2025-10-13 19:54:49,769 | INFO     | will attempt to kill all subprocesses of pid=4113495
[2025-10-13 21:55:25] 2025-10-13 19:54:49,813 | INFO     | process IDs to be killed: [4113495] (in reverse order)
[2025-10-13 21:55:25] 2025-10-13 19:54:49,839 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 21:55:25] 2025-10-13 19:54:49,839 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 21:55:25] 2025-10-13 19:54:49,840 | INFO     | did not find any defunct processes belonging to 4113495
[2025-10-13 21:55:25] 2025-10-13 19:54:49,842 | INFO     | did not find any defunct processes belonging to 4113495
[2025-10-13 21:55:25] 2025-10-13 19:54:49,842 | INFO     | ready for new job
[2025-10-13 21:55:25] 2025-10-13 19:54:49,842 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 21:55:25] 2025-10-13 19:54:49,842 | INFO     | ***************************************
[2025-10-13 21:55:25] 2025-10-13 19:54:49,842 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 21:55:25] 2025-10-13 19:54:49,843 | INFO     | ***************************************
[2025-10-13 21:55:25] 2025-10-13 19:54:49,843 | INFO     | 
[2025-10-13 21:55:25] 2025-10-13 19:54:49,843 | INFO     | architecture information:
[2025-10-13 21:55:25] 2025-10-13 19:54:49,843 | INFO     | executing command: cat /etc/os-release
[2025-10-13 21:55:25] 2025-10-13 19:54:49,852 | INFO     | cat /etc/os-release:
[2025-10-13 21:55:25] NAME="CentOS Linux"
[2025-10-13 21:55:25] VERSION="7 (Core)"
[2025-10-13 21:55:25] ID="centos"
[2025-10-13 21:55:25] ID_LIKE="rhel fedora"
[2025-10-13 21:55:25] VERSION_ID="7"
[2025-10-13 21:55:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 21:55:25] ANSI_COLOR="0;31"
[2025-10-13 21:55:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 21:55:25] HOME_URL="https://www.centos.org/"
[2025-10-13 21:55:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 21:55:25] 
[2025-10-13 21:55:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 21:55:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 21:55:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 21:55:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 21:55:25] 
[2025-10-13 21:55:25] 2025-10-13 19:54:49,853 | INFO     | ***************************************
[2025-10-13 21:55:25] 2025-10-13 19:54:50,356 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 21:55:25] 2025-10-13 19:54:50,369 | INFO     | sufficient remaining disk space (333172441088 B)
[2025-10-13 21:55:25] 2025-10-13 19:54:50,369 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 21:55:25] 2025-10-13 19:54:50,369 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 21:55:25] 2025-10-13 19:54:50,370 | INFO     | update_server=False
[2025-10-13 21:55:25] 2025-10-13 19:54:50,370 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 21:55:25] 2025-10-13 19:54:50,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 21:55:25] 2025-10-13 19:54:50,370 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:55:25] 2025-10-13 19:54:50,948 | INFO     | all data control threads have been joined
[2025-10-13 21:55:25] 2025-10-13 19:54:50,958 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 21:55:25] 2025-10-13 19:54:51,086 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:55:25] 2025-10-13 19:54:51,086 | INFO     | aborting loop
[2025-10-13 21:55:25] 2025-10-13 19:54:51,375 | INFO     | [job] retrieve thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:51,376 | INFO     | [job] queue monitor thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:51,661 | INFO     | all job control threads have been joined
[2025-10-13 21:55:25] 2025-10-13 19:54:51,693 | INFO     | all payload control threads have been joined
[2025-10-13 21:55:25] 2025-10-13 19:54:51,739 | INFO     | [payload] failed_post thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:51,952 | INFO     | [data] control thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:52,091 | INFO     | [job] job monitor thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:52,266 | INFO     | [payload] validate_post thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:52,426 | INFO     | [data] copytool_in thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:52,528 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:52,652 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:52,666 | INFO     | [job] control thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:52,670 | INFO     | [job] validate thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:52,699 | INFO     | [payload] control thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:52,792 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:52,800 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:52,964 | INFO     | [data] copytool_out thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:54:54,377 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 21:55:25] 2025-10-13 19:55:19,532 | INFO     | [monitor] cgroup control has ended
[2025-10-13 21:55:25] 2025-10-13 19:55:20,096 | INFO     | PID=4106941 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 21:55:25] 2025-10-13 19:55:20,096 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 21:55:25] 2025-10-13 19:55:20,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 21:55:25] 2025-10-13 19:55:20,096 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 21:55:25] 2025-10-13 19:55:20,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140433500895040)>', '<ExcThread(monitor, started 140432881219328)>']
[2025-10-13 21:55:25] 2025-10-13 19:55:21,101 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 21:55:25] 2025-10-13 19:55:21,102 | INFO     | [monitor] control thread has ended
[2025-10-13 21:55:25] 2025-10-13 19:55:25,527 | INFO     | all workflow threads have been joined
[2025-10-13 21:55:25] 2025-10-13 19:55:25,528 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 21:55:25] 2025-10-13 19:55:25,528 | INFO     | traces error code: 0
[2025-10-13 21:55:25] 2025-10-13 19:55:25,528 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 21:55:25] 2025-10-13 19:55:25,584 [wrapper] ==== pilot stdout END ====
[2025-10-13 21:55:25] 2025-10-13 19:55:25,586 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 21:55:25] 2025-10-13 19:55:25,589 [wrapper] pilotpid: 4106941
[2025-10-13 21:55:25] 2025-10-13 19:55:25,592 [wrapper] Pilot exit status: 0
[2025-10-13 21:55:25] 2025-10-13 19:55:25,599 [wrapper] pandaids: 6841124583
[2025-10-13 21:55:25] 2025-10-13 19:55:25,617 [wrapper] cleanup supervisor_pilot 4123687 4106942
[2025-10-13 21:55:25] 2025-10-13 19:55:25,620 [wrapper] Test setup, not cleaning
[2025-10-13 21:55:25] 2025-10-13 19:55:25,622 [wrapper] apfmon messages muted
[2025-10-13 21:55:25] 2025-10-13 19:55:25,625 [wrapper] ==== wrapper stdout END ====
[2025-10-13 21:55:25] 2025-10-13 19:55:25,627 [wrapper] ==== wrapper stderr END ====
[2025-10-13 21:55:25]  *** Error codes and diagnostics ***
[2025-10-13 21:55:25]     "exeErrorCode": 0,
[2025-10-13 21:55:25]     "exeErrorDiag": "",
[2025-10-13 21:55:25]     "pilotErrorCode": 0,
[2025-10-13 21:55:25]     "pilotErrorDiag": "",
[2025-10-13 21:55:25]  *** Listing of results directory ***
[2025-10-13 21:55:25] total 405636
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc    557409 Oct 13 03:18 pilot3.tar.gz
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc      5112 Oct 13 03:58 queuedata.json
[2025-10-13 21:55:25] -rwx------ 1 boinc boinc     36292 Oct 13 03:59 runpilot2-wrapper.sh
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc       100 Oct 13 20:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 21:55:25] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 20:52 run_atlas
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc       105 Oct 13 20:52 job.xml
[2025-10-13 21:55:25] -rw-r--r-- 2 boinc boinc 218206666 Oct 13 20:52 EVNT.46676267._004373.pool.root.1
[2025-10-13 21:55:25] -rw-r--r-- 2 boinc boinc    569681 Oct 13 20:52 input.tar.gz
[2025-10-13 21:55:25] -rw-r--r-- 2 boinc boinc     15120 Oct 13 20:52 start_atlas.sh
[2025-10-13 21:55:25] drwxrwx--x 2 boinc boinc      4096 Oct 13 20:52 shared
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc         0 Oct 13 20:52 boinc_setup_complete
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc      6438 Oct 13 20:52 init_data.xml
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc         0 Oct 13 20:52 boinc_lockfile
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc      2550 Oct 13 20:52 pandaJob.out
[2025-10-13 21:55:25] -rw------- 1 boinc boinc    972799 Oct 13 20:52 agis_schedconf.cvmfs.json
[2025-10-13 21:55:25] -rw------- 1 boinc boinc   1560580 Oct 13 20:52 agis_ddmendpoints.agis.ALL.json
[2025-10-13 21:55:25] drwx------ 5 boinc boinc      4096 Oct 13 20:52 pilot3
[2025-10-13 21:55:25] -rw------- 1 boinc boinc 191632725 Oct 13 21:54 HITS.46676269._094450.pool.root.1
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc       530 Oct 13 21:54 boinc_task_state.xml
[2025-10-13 21:55:25] -rw------- 1 boinc boinc        95 Oct 13 21:54 pilot_heartbeat.json
[2025-10-13 21:55:25] -rw------- 1 boinc boinc      1014 Oct 13 21:54 memory_monitor_summary.json
[2025-10-13 21:55:25] -rw------- 1 boinc boinc    254051 Oct 13 21:54 log.46676269._094450.job.log.tgz.1
[2025-10-13 21:55:25] -rw------- 1 boinc boinc      7759 Oct 13 21:54 heartbeat.json
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc      8192 Oct 13 21:55 boinc_mmap_file
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc        27 Oct 13 21:55 wrapper_checkpoint.txt
[2025-10-13 21:55:25] -rw------- 1 boinc boinc      4752 Oct 13 21:55 pilotlog.txt
[2025-10-13 21:55:25] -rw------- 1 boinc boinc    564291 Oct 13 21:55 log.46676269._094450.job.log.1
[2025-10-13 21:55:25] -rw------- 1 boinc boinc       357 Oct 13 21:55 output.list
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc       620 Oct 13 21:55 runtime_log
[2025-10-13 21:55:25] -rw------- 1 boinc boinc    839680 Oct 13 21:55 result.tar.gz
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc      8797 Oct 13 21:55 runtime_log.err
[2025-10-13 21:55:25] -rw------- 1 boinc boinc       662 Oct 13 21:55 lIxKDmy1MS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwQmNDmOTH3Rn.diag
[2025-10-13 21:55:25] -rw-r--r-- 1 boinc boinc     11937 Oct 13 21:55 stderr.txt
[2025-10-13 21:55:25] HITS file was successfully produced:
[2025-10-13 21:55:25] -rw------- 1 boinc boinc 191632725 Oct 13 21:54 shared/HITS.pool.root.1
[2025-10-13 21:55:25]  *** Contents of shared directory: ***
[2025-10-13 21:55:25] total 401644
[2025-10-13 21:55:25] -rw-r--r-- 2 boinc boinc 218206666 Oct 13 20:52 ATLAS.root_0
[2025-10-13 21:55:25] -rw-r--r-- 2 boinc boinc    569681 Oct 13 20:52 input.tar.gz
[2025-10-13 21:55:25] -rw-r--r-- 2 boinc boinc     15120 Oct 13 20:52 start_atlas.sh
[2025-10-13 21:55:25] -rw------- 1 boinc boinc 191632725 Oct 13 21:54 HITS.pool.root.1
[2025-10-13 21:55:25] -rw------- 1 boinc boinc    839680 Oct 13 21:55 result.tar.gz
21:55:26 (4103159): run_atlas exited; CPU time 14038.071973
21:55:26 (4103159): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN