Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
08:51:14 (1638081): wrapper (7.7.26015): starting
08:51:14 (1638081): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 08:51:14] Arguments: --nthreads 12
[2025-10-13 08:51:14] Threads: 12
[2025-10-13 08:51:14] Checking for CVMFS
[2025-10-13 08:51:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:51:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:51:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:51:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:51:15] 2.11.0.0 3299214 4285 92104 151654 2 188 5519028 6144001 14759 130560 0 84163100 100.000 152804 169 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-13 08:51:15] CVMFS is ok
[2025-10-13 08:51:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:51:15] Checking for apptainer binary...
[2025-10-13 08:51:15] apptainer is not installed, using version from CVMFS
[2025-10-13 08:51:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:51:15] radiat0r
[2025-10-13 08:51:15] apptainer works
[2025-10-13 08:51:15] Set ATHENA_PROC_NUMBER=12
[2025-10-13 08:51:15] Set ATHENA_CORE_NUMBER=12
[2025-10-13 08:51:15] Starting ATLAS job with PandaID=6841177428
[2025-10-13 08:51:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:42:47]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:42:47]  status=None
[2025-10-13 09:42:47]  status_code=0
[2025-10-13 09:42:47]  storage_token=
[2025-10-13 09:42:47]  surl=/var/lib/boinc/slots/13/PanDA_Pilot-6841177428/log.46676269._094818.job.log.tgz.1
[2025-10-13 09:42:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0c/3d/log.46676269._094818.job.log.tgz.1
[2025-10-13 09:42:47]  workdir=None
[2025-10-13 09:42:47] ]
[2025-10-13 09:42:47] 2025-10-13 09:42:05,358 | INFO     | transferring file log.46676269._094818.job.log.tgz.1 from /var/lib/boinc/slots/13/PanDA_Pilot-6841177428/log.46676269._094818.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-13 09:42:47] 2025-10-13 09:42:05,359 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/13/PanDA_Pilot-6841177428/log.46676269._094818.job.log.tgz.1 /var/lib/boinc/slots/13/log.46676269._094818.j
[2025-10-13 09:42:47] 2025-10-13 09:42:05,388 | INFO     | adding to output.list: log.46676269._094818.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0c/3d/log.46676269._094818.job.log.tg
[2025-10-13 09:42:47] 2025-10-13 09:42:05,390 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 09:42:47] 2025-10-13 09:42:05,390 | INFO     | summary of transferred files:
[2025-10-13 09:42:47] 2025-10-13 09:42:05,390 | INFO     |  -- lfn=log.46676269._094818.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 09:42:47] 2025-10-13 09:42:05,390 | INFO     | stage-out finished correctly
[2025-10-13 09:42:47] 2025-10-13 09:42:06,124 | INFO     | number of running child processes to parent process 1650924: 1
[2025-10-13 09:42:47] 2025-10-13 09:42:06,124 | INFO     | maximum number of monitored processes: 6
[2025-10-13 09:42:47] 2025-10-13 09:42:06,358 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 09:42:47] 2025-10-13 09:42:06,942 | INFO     | time since job start (3037s) is within the limit (172800.0s)
[2025-10-13 09:42:47] 2025-10-13 09:42:07,167 | INFO     | job 6841177428 has state=finished
[2025-10-13 09:42:47] 2025-10-13 09:42:07,167 | INFO     | preparing for final server update for job 6841177428 in state='finished'
[2025-10-13 09:42:47] 2025-10-13 09:42:07,168 | INFO     | this job has now completed (state=finished)
[2025-10-13 09:42:47] 2025-10-13 09:42:07,168 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 09:42:47] 2025-10-13 09:42:07,168 | INFO     | log transfer has been attempted: DONE
[2025-10-13 09:42:47] 2025-10-13 09:42:07,168 | INFO     | job 6841177428 has finished - writing final server update
[2025-10-13 09:42:47] 2025-10-13 09:42:07,169 | INFO     | total number of processed events: 400 (read)
[2025-10-13 09:42:47] 2025-10-13 09:42:07,171 | INFO     | executing command: lscpu
[2025-10-13 09:42:47] 2025-10-13 09:42:07,384 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 09:42:47] 2025-10-13 09:42:08,626 | INFO     | monitor loop #212: job 0:6841177428 is in state 'finished'
[2025-10-13 09:42:47] 2025-10-13 09:42:08,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 09:42:47] 2025-10-13 09:42:08,948 | INFO     | time since job start (3039s) is within the limit (172800.0s)
[2025-10-13 09:42:47] 2025-10-13 09:42:10,954 | INFO     | time since job start (3041s) is within the limit (172800.0s)
[2025-10-13 09:42:47] 2025-10-13 09:42:11,130 | INFO     | monitor loop #213: job 0:6841177428 is in state 'finished'
[2025-10-13 09:42:47] 2025-10-13 09:42:11,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 09:42:47] 2025-10-13 09:42:12,960 | INFO     | time since job start (3043s) is within the limit (172800.0s)
[2025-10-13 09:42:47] 2025-10-13 09:42:13,634 | INFO     | monitor loop #214: job 0:6841177428 is in state 'finished'
[2025-10-13 09:42:47] 2025-10-13 09:42:13,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 09:42:47] 2025-10-13 09:42:13,652 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 09:42:47] 2025-10-13 09:42:13,708 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2372.0145507812495
[2025-10-13 09:42:47] 2025-10-13 09:42:13,786 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-6841177428/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 09:42:47] 2025-10-13 09:42:13,787 | INFO     | extracted standard info from prmon json
[2025-10-13 09:42:47] 2025-10-13 09:42:13,787 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 09:42:47] 2025-10-13 09:42:13,787 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 09:42:47] 2025-10-13 09:42:13,787 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 09:42:47] 2025-10-13 09:42:13,787 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 09:42:47] 2025-10-13 09:42:13,788 | INFO     | fitting pss+swap vs Time
[2025-10-13 09:42:47] 2025-10-13 09:42:13,788 | INFO     | sum of square deviations: 24640462.0
[2025-10-13 09:42:47] 2025-10-13 09:42:13,788 | INFO     | sum of deviations: 247120150.00000003
[2025-10-13 09:42:47] 2025-10-13 09:42:13,788 | INFO     | mean x: 1760347110.0
[2025-10-13 09:42:47] 2025-10-13 09:42:13,789 | INFO     | mean y: 2660819.418604651
[2025-10-13 09:42:47] 2025-10-13 09:42:13,789 | INFO     | -- intersect: -17651928687.680187
[2025-10-13 09:42:47] 2025-10-13 09:42:13,789 | INFO     | intersect: -17651928687.680187
[2025-10-13 09:42:47] 2025-10-13 09:42:13,789 | INFO     | chi2: 0.0011456612313876647
[2025-10-13 09:42:47] 2025-10-13 09:42:13,789 | INFO     | -- intersect: -17651928687.680187
[2025-10-13 09:42:47] 2025-10-13 09:42:13,789 | INFO     | current memory leak: 10.03 B/s (using 43 data points, chi2=0.00)
[2025-10-13 09:42:47] 2025-10-13 09:42:13,789 | INFO     | could have reported an average CPU frequency of 2372 MHz (5 samples)
[2025-10-13 09:42:47] 2025-10-13 09:42:13,789 | INFO     | ..............................
[2025-10-13 09:42:47] 2025-10-13 09:42:13,789 | INFO     | . Timing measurements:
[2025-10-13 09:42:47] 2025-10-13 09:42:13,789 | INFO     | . get job = 0 s
[2025-10-13 09:42:47] 2025-10-13 09:42:13,789 | INFO     | . initial setup = 1 s
[2025-10-13 09:42:47] 2025-10-13 09:42:13,789 | INFO     | . payload setup = 8 s
[2025-10-13 09:42:47] 2025-10-13 09:42:13,790 | INFO     | . stage-in = 0 s
[2025-10-13 09:42:47] 2025-10-13 09:42:13,790 | INFO     | . payload execution = 3003 s
[2025-10-13 09:42:47] 2025-10-13 09:42:13,790 | INFO     | . stage-out = 1 s
[2025-10-13 09:42:47] 2025-10-13 09:42:13,790 | INFO     | . log creation = 0 s
[2025-10-13 09:42:47] 2025-10-13 09:42:13,790 | INFO     | ..............................
[2025-10-13 09:42:47] 2025-10-13 09:42:13,858 | INFO     | 
[2025-10-13 09:42:47] 2025-10-13 09:42:13,859 | INFO     | job summary report
[2025-10-13 09:42:47] 2025-10-13 09:42:13,859 | INFO     | --------------------------------------------------
[2025-10-13 09:42:47] 2025-10-13 09:42:13,859 | INFO     | PanDA job id: 6841177428
[2025-10-13 09:42:47] 2025-10-13 09:42:13,859 | INFO     | task id: 46676269
[2025-10-13 09:42:47] 2025-10-13 09:42:13,859 | INFO     | errors: (none)
[2025-10-13 09:42:47] 2025-10-13 09:42:13,859 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 09:42:47] 2025-10-13 09:42:13,859 | INFO     | pilot state: finished 
[2025-10-13 09:42:47] 2025-10-13 09:42:13,859 | INFO     | transexitcode: 0
[2025-10-13 09:42:47] 2025-10-13 09:42:13,860 | INFO     | exeerrorcode: 0
[2025-10-13 09:42:47] 2025-10-13 09:42:13,860 | INFO     | exeerrordiag: 
[2025-10-13 09:42:47] 2025-10-13 09:42:13,860 | INFO     | exitcode: 0
[2025-10-13 09:42:47] 2025-10-13 09:42:13,860 | INFO     | exitmsg: OK
[2025-10-13 09:42:47] 2025-10-13 09:42:13,860 | INFO     | cpuconsumptiontime: 31810 s
[2025-10-13 09:42:47] 2025-10-13 09:42:13,860 | INFO     | nevents: 400
[2025-10-13 09:42:47] 2025-10-13 09:42:13,860 | INFO     | neventsw: 0
[2025-10-13 09:42:47] 2025-10-13 09:42:13,860 | INFO     | pid: 1650924
[2025-10-13 09:42:47] 2025-10-13 09:42:13,860 | INFO     | pgrp: 1650924
[2025-10-13 09:42:47] 2025-10-13 09:42:13,860 | INFO     | corecount: 12
[2025-10-13 09:42:47] 2025-10-13 09:42:13,860 | INFO     | event service: False
[2025-10-13 09:42:47] 2025-10-13 09:42:13,861 | INFO     | sizes: {0: 2348636, 1: 2348835, 8: 2349097, 11: 2349125, 3016: 2374541, 3017: 2374540, 3018: 2383724, 3019: 2383780, 3026: 2384006}
[2025-10-13 09:42:47] 2025-10-13 09:42:13,861 | INFO     | --------------------------------------------------
[2025-10-13 09:42:47] 2025-10-13 09:42:13,861 | INFO     | 
[2025-10-13 09:42:47] 2025-10-13 09:42:13,861 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-10-13 09:42:47] 2025-10-13 09:42:13,892 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,893 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,893 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,893 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,893 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,893 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,893 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,893 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,894 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,894 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,894 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,894 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,894 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,894 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,894 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,894 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,894 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,894 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:42:47] 2025-10-13 09:42:13,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,895 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:42:47] 2025-10-13 09:42:13,895 | INFO     | job 6841177428 has completed (purged errors)
[2025-10-13 09:42:47] 2025-10-13 09:42:13,895 | INFO     | overall cleanup function is called
[2025-10-13 09:42:47] 2025-10-13 09:42:14,903 | INFO     | --- collectZombieJob: --- 10, [1650924]
[2025-10-13 09:42:47] 2025-10-13 09:42:14,904 | INFO     | zombie collector waiting for pid 1650924
[2025-10-13 09:42:47] 2025-10-13 09:42:14,904 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:42:47] 2025-10-13 09:42:14,904 | INFO     | collected zombie processes
[2025-10-13 09:42:47] 2025-10-13 09:42:14,904 | INFO     | will attempt to kill all subprocesses of pid=1650924
[2025-10-13 09:42:47] 2025-10-13 09:42:15,734 | INFO     | process IDs to be killed: [1650924] (in reverse order)
[2025-10-13 09:42:47] 2025-10-13 09:42:16,016 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:42:47] 2025-10-13 09:42:16,016 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:42:47] 2025-10-13 09:42:16,045 | INFO     | did not find any defunct processes belonging to 1650924
[2025-10-13 09:42:47] 2025-10-13 09:42:16,072 | INFO     | did not find any defunct processes belonging to 1650924
[2025-10-13 09:42:47] 2025-10-13 09:42:16,072 | INFO     | ready for new job
[2025-10-13 09:42:47] 2025-10-13 09:42:16,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:42:47] 2025-10-13 09:42:16,075 | INFO     | ***************************************
[2025-10-13 09:42:47] 2025-10-13 09:42:16,075 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:42:47] 2025-10-13 09:42:16,075 | INFO     | ***************************************
[2025-10-13 09:42:47] 2025-10-13 09:42:16,075 | INFO     | 
[2025-10-13 09:42:47] 2025-10-13 09:42:16,113 | INFO     | architecture information:
[2025-10-13 09:42:47] 2025-10-13 09:42:16,114 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:42:47] 2025-10-13 09:42:16,139 | INFO     | cat /etc/os-release:
[2025-10-13 09:42:47] NAME="CentOS Linux"
[2025-10-13 09:42:47] VERSION="7 (Core)"
[2025-10-13 09:42:47] ID="centos"
[2025-10-13 09:42:47] ID_LIKE="rhel fedora"
[2025-10-13 09:42:47] VERSION_ID="7"
[2025-10-13 09:42:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:42:47] ANSI_COLOR="0;31"
[2025-10-13 09:42:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:42:47] HOME_URL="https://www.centos.org/"
[2025-10-13 09:42:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:42:47] 
[2025-10-13 09:42:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:42:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:42:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:42:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:42:47] 
[2025-10-13 09:42:47] 2025-10-13 09:42:16,140 | INFO     | ***************************************
[2025-10-13 09:42:47] 2025-10-13 09:42:16,643 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-10-13 09:42:47] 2025-10-13 09:42:16,670 | INFO     | sufficient remaining disk space (1724398960640 B)
[2025-10-13 09:42:47] 2025-10-13 09:42:16,671 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:42:47] 2025-10-13 09:42:16,671 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:42:47] 2025-10-13 09:42:16,671 | INFO     | update_server=False
[2025-10-13 09:42:47] 2025-10-13 09:42:16,671 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:42:47] 2025-10-13 09:42:16,671 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:42:47] 2025-10-13 09:42:16,878 | INFO     | all data control threads have been joined
[2025-10-13 09:42:47] 2025-10-13 09:42:16,965 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:42:47] 2025-10-13 09:42:17,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:42:47] 2025-10-13 09:42:17,139 | INFO     | aborting loop
[2025-10-13 09:42:47] 2025-10-13 09:42:17,446 | INFO     | all payload control threads have been joined
[2025-10-13 09:42:47] 2025-10-13 09:42:17,534 | INFO     | all job control threads have been joined
[2025-10-13 09:42:47] 2025-10-13 09:42:17,674 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:17,727 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:17,746 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:17,794 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:17,884 | INFO     | [data] control thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:17,902 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:17,986 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:18,142 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:18,450 | INFO     | [payload] control thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:18,540 | INFO     | [job] control thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:18,582 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:18,614 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:18,678 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:18,866 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:42:47] 2025-10-13 09:42:18,998 | INFO     | [job] validate thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:19,870 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:20,970 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:42:47] 2025-10-13 09:42:33,670 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:42:47] 2025-10-13 09:42:34,654 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140188010616640)>', '<ExcThread(monitor, started 140187413747456)>']
[2025-10-13 09:42:47] 2025-10-13 09:42:39,680 | INFO     | all workflow threads have been joined
[2025-10-13 09:42:47] 2025-10-13 09:42:39,680 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:42:47] 2025-10-13 09:42:39,680 | INFO     | traces error code: 0
[2025-10-13 09:42:47] 2025-10-13 09:42:39,681 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:42:47] 2025-10-13 09:42:47,051 | INFO     | PID=1642771 has CPU usage=12.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 09:42:47] 2025-10-13 09:42:47,052 | INFO     | .. there are 17 such processes running
[2025-10-13 09:42:47] 2025-10-13 09:42:47,053 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:42:47] 2025-10-13 09:42:47,053 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:42:47] 2025-10-13 09:42:47,053 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:42:47] 2025-10-13 09:42:47,053 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:42:47] 2025-10-13 09:42:47,053 | INFO     | [monitor] control thread has ended
[2025-10-13 09:42:47] 2025-10-13 09:42:47,227 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:42:47] 2025-10-13 09:42:47,232 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:42:47] 2025-10-13 09:42:47,236 [wrapper] pilotpid: 1642771
[2025-10-13 09:42:47] 2025-10-13 09:42:47,239 [wrapper] Pilot exit status: 0
[2025-10-13 09:42:47] 2025-10-13 09:42:47,253 [wrapper] pandaids: 6841177428
[2025-10-13 09:42:47] 2025-10-13 09:42:47,448 [wrapper] cleanup supervisor_pilot 2035722 1642772
[2025-10-13 09:42:47] 2025-10-13 09:42:47,451 [wrapper] Test setup, not cleaning
[2025-10-13 09:42:47] 2025-10-13 09:42:47,454 [wrapper] apfmon messages muted
[2025-10-13 09:42:47] 2025-10-13 09:42:47,456 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:42:47] 2025-10-13 09:42:47,460 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:42:47]  *** Error codes and diagnostics ***
[2025-10-13 09:42:47]     "exeErrorCode": 0,
[2025-10-13 09:42:47]     "exeErrorDiag": "",
[2025-10-13 09:42:47]     "pilotErrorCode": 0,
[2025-10-13 09:42:47]     "pilotErrorDiag": "",
[2025-10-13 09:42:47]  *** Listing of results directory ***
[2025-10-13 09:42:47] total 407652
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc    557409 Oct 13 02:00 pilot3.tar.gz
[2025-10-13 09:42:47] -rwx------ 1 boinc boinc     36292 Oct 13 02:16 runpilot2-wrapper.sh
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc      5112 Oct 13 02:16 queuedata.json
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc       100 Oct 13 08:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:42:47] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 08:51 run_atlas
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc       105 Oct 13 08:51 job.xml
[2025-10-13 09:42:47] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:51 start_atlas.sh
[2025-10-13 09:42:47] drwxrwx--x 2 boinc boinc      4096 Oct 13 08:51 shared
[2025-10-13 09:42:47] -rw-r--r-- 2 boinc boinc    569678 Oct 13 08:51 input.tar.gz
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc      9397 Oct 13 08:51 init_data.xml
[2025-10-13 09:42:47] -rw-r--r-- 2 boinc boinc 220370671 Oct 13 08:51 EVNT.46676267._001867.pool.root.1
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:51 boinc_setup_complete
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:51 boinc_lockfile
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc      2549 Oct 13 08:51 pandaJob.out
[2025-10-13 09:42:47] -rw------- 1 boinc boinc    972857 Oct 13 08:51 agis_schedconf.cvmfs.json
[2025-10-13 09:42:47] -rw------- 1 boinc boinc   1560580 Oct 13 08:51 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:42:47] drwx------ 5 boinc boinc      4096 Oct 13 08:51 pilot3
[2025-10-13 09:42:47] -rw------- 1 boinc boinc 191540951 Oct 13 09:41 HITS.46676269._094818.pool.root.1
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc       529 Oct 13 09:41 boinc_task_state.xml
[2025-10-13 09:42:47] -rw------- 1 boinc boinc      1023 Oct 13 09:42 memory_monitor_summary.json
[2025-10-13 09:42:47] -rw------- 1 boinc boinc    356467 Oct 13 09:42 log.46676269._094818.job.log.tgz.1
[2025-10-13 09:42:47] -rw------- 1 boinc boinc      7738 Oct 13 09:42 heartbeat.json
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc        27 Oct 13 09:42 wrapper_checkpoint.txt
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc      8192 Oct 13 09:42 boinc_mmap_file
[2025-10-13 09:42:47] -rw------- 1 boinc boinc       824 Oct 13 09:42 pilotlog.txt
[2025-10-13 09:42:47] -rw------- 1 boinc boinc        95 Oct 13 09:42 pilot_heartbeat.json
[2025-10-13 09:42:47] -rw------- 1 boinc boinc    453822 Oct 13 09:42 log.46676269._094818.job.log.1
[2025-10-13 09:42:47] -rw------- 1 boinc boinc       357 Oct 13 09:42 output.list
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc       620 Oct 13 09:42 runtime_log
[2025-10-13 09:42:47] -rw------- 1 boinc boinc    829440 Oct 13 09:42 result.tar.gz
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc      8672 Oct 13 09:42 runtime_log.err
[2025-10-13 09:42:47] -rw------- 1 boinc boinc       644 Oct 13 09:42 NdDODmFINS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjTmNDmYRjOZm.diag
[2025-10-13 09:42:47] -rw-r--r-- 1 boinc boinc     21542 Oct 13 09:42 stderr.txt
[2025-10-13 09:42:47] HITS file was successfully produced:
[2025-10-13 09:42:47] -rw------- 1 boinc boinc 191540951 Oct 13 09:41 shared/HITS.pool.root.1
[2025-10-13 09:42:47]  *** Contents of shared directory: ***
[2025-10-13 09:42:47] total 403656
[2025-10-13 09:42:47] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:51 start_atlas.sh
[2025-10-13 09:42:47] -rw-r--r-- 2 boinc boinc    569678 Oct 13 08:51 input.tar.gz
[2025-10-13 09:42:47] -rw-r--r-- 2 boinc boinc 220370671 Oct 13 08:51 ATLAS.root_0
[2025-10-13 09:42:47] -rw------- 1 boinc boinc 191540951 Oct 13 09:41 HITS.pool.root.1
[2025-10-13 09:42:47] -rw------- 1 boinc boinc    829440 Oct 13 09:42 result.tar.gz
09:42:49 (1638081): run_atlas exited; CPU time 31994.341978
09:42:49 (1638081): called boinc_finish(0)

</stderr_txt>
]]>

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