Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 13:47:15 (51500): vboxwrapper version 26210
2025-10-13 13:47:15 (51500): BOINC client version: 8.0.2
2025-10-13 13:47:16 (51500): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-10-13 13:47:16 (51500): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 13:47:17 (51500): Create VM. (boinc_7aaf30de51145095, slot#5)
2025-10-13 13:47:17 (51500): Setting Memory Size for VM. (4800MB)
2025-10-13 13:47:17 (51500): Setting CPU Count for VM. (8)
2025-10-13 13:47:18 (51500): Setting Chipset Options for VM.
2025-10-13 13:47:18 (51500): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 13:47:18 (51500): Setting Boot Options for VM.
2025-10-13 13:47:19 (51500): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 13:47:19 (51500): Enabling VM Network Access.
2025-10-13 13:47:19 (51500): Disabling USB Support for VM.
2025-10-13 13:47:20 (51500): Disabling COM Port Support for VM.
2025-10-13 13:47:20 (51500): Disabling LPT Port Support for VM.
2025-10-13 13:47:20 (51500): Disabling Audio Support for VM.
2025-10-13 13:47:20 (51500): Disabling Clipboard Support for VM.
2025-10-13 13:47:21 (51500): Disabling Drag and Drop Support for VM.
2025-10-13 13:47:21 (51500): Adding storage controller(s) to VM.
2025-10-13 13:47:21 (51500): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 13:47:23 (51500): Adding VirtualBox Guest Additions to VM.
2025-10-13 13:47:24 (51500): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 13:47:24 (51500): forwarding host port 54740 to guest port 80
2025-10-13 13:47:24 (51500): Enabling remote desktop for VM.
2025-10-13 13:47:24 (51500): Required extension pack not installed, remote desktop not enabled.
2025-10-13 13:47:24 (51500): Enabling shared directory for VM.
2025-10-13 13:47:25 (51500): Starting VM using VBoxManage interface. (boinc_7aaf30de51145095, slot#5)
2025-10-13 13:47:29 (51500): Successfully started VM. (PID = '16244')
2025-10-13 13:47:29 (51500): Reporting VM Process ID to BOINC.
2025-10-13 13:47:29 (51500): Guest Log: BIOS: VirtualBox 7.1.6
2025-10-13 13:47:29 (51500): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 13:47:29 (51500): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 13:47:29 (51500): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 13:47:29 (51500): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 13:47:29 (51500): Detected: Web Application Enabled (http://localhost:54740)
2025-10-13 13:47:29 (51500): Preference change detected
2025-10-13 13:47:29 (51500): Setting CPU throttle for VM. (100%)
2025-10-13 13:47:30 (51500): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 13:47:31 (51500): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 13:47:31 (51500): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 13:47:34 (51500): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 13:47:34 (51500): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 13:47:34 (51500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 13:47:38 (51500): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 13:47:38 (51500): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 13:47:43 (51500): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 13:47:43 (51500): Guest Log: 00:00:00.000132 main     Log opened 2025-10-13T13:47:40.988489000Z
2025-10-13 13:47:43 (51500): Guest Log: 00:00:00.000255 main     OS Product: Linux
2025-10-13 13:47:43 (51500): Guest Log: 00:00:00.000284 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 13:47:43 (51500): Guest Log: 00:00:00.000305 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 13:47:43 (51500): Guest Log: 00:00:00.000324 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 13:47:43 (51500): Guest Log: 00:00:00.000325 main     Process ID: 1376
2025-10-13 13:47:43 (51500): Guest Log: 00:00:00.000325 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 13:47:43 (51500): Guest Log: 00:00:00.000762 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 13:47:43 (51500): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 13:47:43 (51500): Guest Log: [INFO] Mounting shared directory
2025-10-13 13:47:43 (51500): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 13:47:48 (51500): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 13:47:48 (51500): Guest Log: [INFO] Detected branch: prod
2025-10-13 13:47:49 (51500): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 13:47:49 (51500): Guest Log: Copying input files
2025-10-13 13:47:50 (51500): Guest Log: Copied input files into RunAtlas.
2025-10-13 13:47:50 (51500): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 13:47:50 (51500): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 13:47:50 (51500): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 13:47:50 (51500): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 13:47:53 (51500): Guest Log: 00:00:10.003267 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 787 976 273 000ns (GuestNow=1 760 352 473 013 647 000 ns GuestLast=1 760 363 260 989 920 000 ns fSetTimeLastLoop=true )
2025-10-13 13:47:58 (51500): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 13:47:58 (51500): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 13:47:58 (51500): Guest Log: 2.6.3.0 1652 0 30156 151658 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 13:47:58 (51500): Guest Log: copied the webapp to /var/www
2025-10-13 13:47:58 (51500): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-13 13:47:58 (51500): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-13 13:47:59 (51500): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 13:47:59 (51500): Guest Log:  *** Starting ATLAS job. (PandaID=6841068647 taskID=46676269) ***
2025-10-13 15:29:28 (51500): Guest Log:  *** Job finished ***
2025-10-13 15:29:28 (51500): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:28:55,704 | INFO     | job.realtimelogging is not enabled
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:28:56,707 | INFO     | [payload] run_realtimelog thread has finished
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:18,400 | INFO     | [monitor] cgroup control has ended
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:19,815 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140260613003072)>', '<ExcThread(monitor, started 140259740350208)>']
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:19,902 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:19,902 | INFO     | [monitor] control thread has ended
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:24,886 | INFO     | all workflow threads have been joined
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:24,886 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:24,886 | INFO     | traces error code: 0
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:24,886 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:24,972 [wrapper] ==== pilot stdout END ====
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:24,975 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:24,978 [wrapper] pilotpid: 6091
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:24,982 [wrapper] Pilot exit status: 0
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:25,012 [wrapper] pandaids: 6841068647
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:25,039 [wrapper] cleanup supervisor_pilot  1235 6092
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:25,042 [wrapper] Test setup, not cleaning
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:25,047 [wrapper] apfmon messages muted
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:25,050 [wrapper] ==== wrapper stdout END ====
2025-10-13 15:29:28 (51500): Guest Log: 2025-10-13 12:29:25,053 [wrapper] ==== wrapper stderr END ====
2025-10-13 15:29:28 (51500): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 15:29:28 (51500): Guest Log:     "exeErrorCode": 0,
2025-10-13 15:29:28 (51500): Guest Log:     "exeErrorDiag": "",
2025-10-13 15:29:28 (51500): Guest Log:     "pilotErrorCode": 0,
2025-10-13 15:29:28 (51500): Guest Log:     "pilotErrorDiag": "",
2025-10-13 15:29:28 (51500): Guest Log:  *** Listing of results directory ***
2025-10-13 15:29:28 (51500): Guest Log: total 198324
2025-10-13 15:29:28 (51500): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 13 00:02 pilot3.tar.gz
2025-10-13 15:29:28 (51500): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 13 00:09 queuedata.json
2025-10-13 15:29:28 (51500): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 13 00:11 runpilot2-wrapper.sh
2025-10-13 15:29:28 (51500): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 10:47 start_atlas.sh
2025-10-13 15:29:28 (51500): Guest Log: -rwxr-xr-x. 1 atlas atlas    569683 Oct 13 10:47 input.tar.gz
2025-10-13 15:29:28 (51500): Guest Log: -rwxr-xr-x. 1 atlas atlas      9072 Oct 13 10:47 init_data.xml
2025-10-13 15:29:28 (51500): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 10:47 EVNT.46676267._002369.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 15:29:28 (51500): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 13 10:47 pandaJob.out
2025-10-13 15:29:28 (51500): Guest Log: -rw-------. 1 atlas atlas    972497 Oct 13 10:49 agis_schedconf.cvmfs.json
2025-10-13 15:29:28 (51500): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 10:49 agis_ddmendpoints.agis.ALL.json
2025-10-13 15:29:28 (51500): Guest Log: drwx------. 5 atlas atlas      4096 Oct 13 10:49 pilot3
2025-10-13 15:29:28 (51500): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 12:28 pilot_heartbeat.json
2025-10-13 15:29:28 (51500): Guest Log: -rw-------. 1 atlas atlas 196930261 Oct 13 12:28 HITS.46676269._092883.pool.root.1
2025-10-13 15:29:28 (51500): Guest Log: -rw-------. 1 atlas atlas      1025 Oct 13 12:28 memory_monitor_summary.json
2025-10-13 15:29:28 (51500): Guest Log: -rw-------. 1 atlas atlas    345391 Oct 13 12:28 log.46676269._092883.job.log.tgz.1
2025-10-13 15:29:28 (51500): Guest Log: -rw-------. 1 atlas atlas      7749 Oct 13 12:28 heartbeat.json
2025-10-13 15:29:28 (51500): Guest Log: -rw-------. 1 atlas atlas      4684 Oct 13 12:29 pilotlog.txt
2025-10-13 15:29:28 (51500): Guest Log: -rw-------. 1 atlas atlas    816122 Oct 13 12:29 log.46676269._092883.job.log.1
2025-10-13 15:29:28 (51500): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 12:29 output.list
2025-10-13 15:29:28 (51500): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 12:29 runtime_log
2025-10-13 15:29:28 (51500): Guest Log: -rw-------. 1 atlas atlas   1177600 Oct 13 12:29 result.tar.gz
2025-10-13 15:29:28 (51500): Guest Log: -rw-r--r--. 1 atlas atlas      8641 Oct 13 12:29 runtime_log.err
2025-10-13 15:29:28 (51500): Guest Log: -rw-------. 1 atlas atlas       658 Oct 13 12:29 o4OLDm0KLS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLAmNDmkPnPZm.diag
2025-10-13 15:29:28 (51500): Guest Log: Looking for outputfile HITS.46676269._092883.pool.root.1
2025-10-13 15:29:28 (51500): Guest Log: HITS file was successfully produced
2025-10-13 15:29:28 (51500): Guest Log: -rw-------. 1 atlas atlas 196930261 Oct 13 12:28 /home/atlas/RunAtlas/HITS.46676269._092883.pool.root.1
2025-10-13 15:29:29 (51500): Guest Log: Successfully finished the ATLAS job!
2025-10-13 15:29:29 (51500): Guest Log: Copying the results back to the shared directory!
2025-10-13 15:29:29 (51500): Guest Log:  *** Contents of shared directory: ***
2025-10-13 15:29:29 (51500): Guest Log: total 408884
2025-10-13 15:29:29 (51500): Guest Log: -rwxrwxrwx. 1 root root 219983233 Oct 13 10:47 ATLAS.root_0
2025-10-13 15:29:29 (51500): Guest Log: -rwxrwxrwx. 1 root root 196930261 Oct 13  2025 HITS.pool.root.1
2025-10-13 15:29:29 (51500): Guest Log: -rwxrwxrwx. 1 root root      9072 Oct 13 10:47 init_data.xml
2025-10-13 15:29:29 (51500): Guest Log: -rwxrwxrwx. 1 root root    569683 Oct 13 08:44 input.tar.gz
2025-10-13 15:29:29 (51500): Guest Log: -rwxrwxrwx. 1 root root   1177600 Oct 13  2025 result.tar.gz
2025-10-13 15:29:29 (51500): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 13 08:44 start_atlas.sh
2025-10-13 15:29:29 (51500): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 15:29:29 (51500): VM Completion File Detected.
2025-10-13 15:29:29 (51500): Powering off VM.
2025-10-13 15:29:30 (51500): Successfully stopped VM.
2025-10-13 15:29:30 (51500): Deregistering VM. (boinc_7aaf30de51145095, slot#5)
2025-10-13 15:29:30 (51500): Removing network bandwidth throttle group from VM.
2025-10-13 15:29:30 (51500): Removing VM from VirtualBox.
2025-10-13 15:29:35 (51500): called boinc_finish(0)

</stderr_txt>
]]>

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