Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:45:11 (27633): wrapper (7.7.26015): starting
04:45:11 (27633): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 04:45:11] Arguments: --nthreads 8
[2025-10-13 04:45:11] Threads: 8
[2025-10-13 04:45:11] Checking for CVMFS
[2025-10-13 04:45:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:45:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:45:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:45:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:45:11] 2.11.2.0 3213 629035 250576 151654 1 188 11759408 20275201 917 130560 1 361922559 99.992 26104598 20191 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 04:45:11] CVMFS is ok
[2025-10-13 04:45:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:45:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:45:11] Further information can be found at the LHC@home message board.
[2025-10-13 04:45:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:45:11] Checking for apptainer binary...
[2025-10-13 04:45:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:45:11] Running /usr/bin/apptainer --version
[2025-10-13 04:45:11] apptainer version 1.3.2-1.el7
[2025-10-13 04:45:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:45:12] c-205-38.aglt2.org
[2025-10-13 04:45:12] apptainer works
[2025-10-13 04:45:12] Set ATHENA_PROC_NUMBER=8
[2025-10-13 04:45:12] Set ATHENA_CORE_NUMBER=8
[2025-10-13 04:45:12] Starting ATLAS job with PandaID=6840851780
[2025-10-13 04:45:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:39:30]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:39:30] 2025-10-13 09:38:23,578 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840851780/log.46676269._090959.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._090959.job
[2025-10-13 05:39:30] 2025-10-13 09:38:23,597 | INFO     | adding to output.list: log.46676269._090959.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/fb/log.46676269._090959.job.log.tg
[2025-10-13 05:39:30] 2025-10-13 09:38:23,598 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:39:30] 2025-10-13 09:38:23,598 | INFO     | summary of transferred files:
[2025-10-13 05:39:30] 2025-10-13 09:38:23,598 | INFO     |  -- lfn=log.46676269._090959.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:39:30] 2025-10-13 09:38:23,599 | INFO     | stage-out finished correctly
[2025-10-13 05:39:30] 2025-10-13 09:38:24,659 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:39:30] 2025-10-13 09:38:25,340 | INFO     | time since job start (3185s) is within the limit (172800.0s)
[2025-10-13 05:39:30] 2025-10-13 09:38:26,170 | INFO     | job 6840851780 has state=finished
[2025-10-13 05:39:30] 2025-10-13 09:38:26,171 | INFO     | preparing for final server update for job 6840851780 in state='finished'
[2025-10-13 05:39:30] 2025-10-13 09:38:26,171 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:39:30] 2025-10-13 09:38:26,171 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:39:30] 2025-10-13 09:38:26,171 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:39:30] 2025-10-13 09:38:26,171 | INFO     | job 6840851780 has finished - writing final server update
[2025-10-13 05:39:30] 2025-10-13 09:38:26,171 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:39:30] 2025-10-13 09:38:26,172 | INFO     | executing command: lscpu
[2025-10-13 05:39:30] 2025-10-13 09:38:26,203 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:39:30] 2025-10-13 09:38:27,329 | WARNING  | process 5418 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 05:39:30] 2025-10-13 09:38:27,329 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840851780/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:39:30] 2025-10-13 09:38:27,330 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840851780/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:39:30] 2025-10-13 09:38:27,330 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 05:39:30] 2025-10-13 09:38:27,330 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 05:39:30] 2025-10-13 09:38:27,331 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3060927 B
[2025-10-13 05:39:30] 2025-10-13 09:38:27,331 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16164 B
[2025-10-13 05:39:30] 2025-10-13 09:38:27,331 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 05:39:30] 2025-10-13 09:38:27,344 | INFO     | time since job start (3187s) is within the limit (172800.0s)
[2025-10-13 05:39:30] 2025-10-13 09:38:28,559 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 05:39:30] 2025-10-13 09:38:28,565 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2785.7783124999996
[2025-10-13 05:39:30] 2025-10-13 09:38:28,567 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840851780/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:39:30] 2025-10-13 09:38:28,568 | INFO     | extracted standard info from prmon json
[2025-10-13 05:39:30] 2025-10-13 09:38:28,568 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:39:30] 2025-10-13 09:38:28,568 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:39:30] 2025-10-13 09:38:28,568 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:39:30] 2025-10-13 09:38:28,568 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:39:30] 2025-10-13 09:38:28,569 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:39:30] 2025-10-13 09:38:28,569 | INFO     | sum of square deviations: 28242390.0
[2025-10-13 05:39:30] 2025-10-13 09:38:28,569 | INFO     | sum of deviations: -2013846191.9999998
[2025-10-13 05:39:30] 2025-10-13 09:38:28,569 | INFO     | mean x: 1760346788.0
[2025-10-13 05:39:30] 2025-10-13 09:38:28,569 | INFO     | mean y: 2581893.6222222224
[2025-10-13 05:39:30] 2025-10-13 09:38:28,569 | INFO     | -- intersect: 125525516589.06517
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | intersect: 125525516589.06517
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | chi2: 0.010839446607427505
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | -- intersect: 125525516589.06517
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | current memory leak: -71.31 B/s (using 45 data points, chi2=0.01)
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | could have reported an average CPU frequency of 2923 MHz (5 samples)
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | ..............................
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | . Timing measurements:
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | . get job = 0 s
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | . initial setup = 2 s
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | . payload setup = 3 s
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | . stage-in = 0 s
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | . payload execution = 3161 s
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | . stage-out = 0 s
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | . log creation = 0 s
[2025-10-13 05:39:30] 2025-10-13 09:38:28,570 | INFO     | ..............................
[2025-10-13 05:39:30] 2025-10-13 09:38:28,601 | INFO     | sufficient remaining disk space (32761708544 B)
[2025-10-13 05:39:30] 2025-10-13 09:38:28,617 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 05:39:30] 2025-10-13 09:38:28,634 | INFO     | 
[2025-10-13 05:39:30] 2025-10-13 09:38:28,634 | INFO     | job summary report
[2025-10-13 05:39:30] 2025-10-13 09:38:28,634 | INFO     | --------------------------------------------------
[2025-10-13 05:39:30] 2025-10-13 09:38:28,634 | INFO     | PanDA job id: 6840851780
[2025-10-13 05:39:30] 2025-10-13 09:38:28,634 | INFO     | task id: 46676269
[2025-10-13 05:39:30] 2025-10-13 09:38:28,634 | INFO     | errors: (none)
[2025-10-13 05:39:30] 2025-10-13 09:38:28,634 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:39:30] 2025-10-13 09:38:28,634 | INFO     | pilot state: finished 
[2025-10-13 05:39:30] 2025-10-13 09:38:28,634 | INFO     | transexitcode: 0
[2025-10-13 05:39:30] 2025-10-13 09:38:28,634 | INFO     | exeerrorcode: 0
[2025-10-13 05:39:30] 2025-10-13 09:38:28,634 | INFO     | exeerrordiag: 
[2025-10-13 05:39:30] 2025-10-13 09:38:28,635 | INFO     | exitcode: 0
[2025-10-13 05:39:30] 2025-10-13 09:38:28,635 | INFO     | exitmsg: OK
[2025-10-13 05:39:30] 2025-10-13 09:38:28,635 | INFO     | cpuconsumptiontime: 23287 s
[2025-10-13 05:39:30] 2025-10-13 09:38:28,635 | INFO     | nevents: 400
[2025-10-13 05:39:30] 2025-10-13 09:38:28,635 | INFO     | neventsw: 0
[2025-10-13 05:39:30] 2025-10-13 09:38:28,635 | INFO     | pid: 5418
[2025-10-13 05:39:30] 2025-10-13 09:38:28,635 | INFO     | pgrp: 5418
[2025-10-13 05:39:30] 2025-10-13 09:38:28,635 | INFO     | corecount: 8
[2025-10-13 05:39:30] 2025-10-13 09:38:28,635 | INFO     | event service: False
[2025-10-13 05:39:30] 2025-10-13 09:38:28,635 | INFO     | sizes: {0: 2348635, 1: 2348834, 3: 2349096, 11: 2349124, 3168: 2374669, 3169: 2383667, 3170: 2383851, 3174: 2384077}
[2025-10-13 05:39:30] 2025-10-13 09:38:28,635 | INFO     | --------------------------------------------------
[2025-10-13 05:39:30] 2025-10-13 09:38:28,635 | INFO     | 
[2025-10-13 05:39:30] 2025-10-13 09:38:28,635 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 05:39:30] 2025-10-13 09:38:28,639 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6840851780: 3351184 B (within 2537553920 B limit)
[2025-10-13 05:39:30] 2025-10-13 09:38:28,640 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6840851780/HITS.46676269._090959.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 05:39:30] 2025-10-13 09:38:28,640 | INFO     | total size of present files: 0 B (workdir size: 3351184 B)
[2025-10-13 05:39:30] 2025-10-13 09:38:28,640 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6840851780/HITS.46676269._090959.pool.root.1 since it does not exist
[2025-10-13 05:39:30] 2025-10-13 09:38:28,657 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,657 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,658 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,658 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,658 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,658 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,658 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,658 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,658 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,658 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,658 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,658 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,659 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,659 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,659 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,659 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,659 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,659 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:39:30] 2025-10-13 09:38:28,659 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,659 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:39:30] 2025-10-13 09:38:28,659 | INFO     | job 6840851780 has completed (purged errors)
[2025-10-13 05:39:30] 2025-10-13 09:38:28,659 | INFO     | overall cleanup function is called
[2025-10-13 05:39:30] 2025-10-13 09:38:28,725 | INFO     | number of running child processes to parent process 5418: 1
[2025-10-13 05:39:30] 2025-10-13 09:38:28,725 | INFO     | maximum number of monitored processes: 6
[2025-10-13 05:39:30] 2025-10-13 09:38:28,726 | INFO     | aborting job monitoring since job object (job id=6840851780) has expired
[2025-10-13 05:39:30] 2025-10-13 09:38:29,667 | INFO     | --- collectZombieJob: --- 10, [5418]
[2025-10-13 05:39:30] 2025-10-13 09:38:29,667 | INFO     | zombie collector waiting for pid 5418
[2025-10-13 05:39:30] 2025-10-13 09:38:29,667 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:39:30] 2025-10-13 09:38:29,667 | INFO     | collected zombie processes
[2025-10-13 05:39:30] 2025-10-13 09:38:29,667 | INFO     | will attempt to kill all subprocesses of pid=5418
[2025-10-13 05:39:30] 2025-10-13 09:38:29,764 | INFO     | process IDs to be killed: [5418] (in reverse order)
[2025-10-13 05:39:30] 2025-10-13 09:38:29,816 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:39:30] 2025-10-13 09:38:29,817 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:39:30] 2025-10-13 09:38:29,819 | INFO     | did not find any defunct processes belonging to 5418
[2025-10-13 05:39:30] 2025-10-13 09:38:29,821 | INFO     | did not find any defunct processes belonging to 5418
[2025-10-13 05:39:30] 2025-10-13 09:38:29,821 | INFO     | ready for new job
[2025-10-13 05:39:30] 2025-10-13 09:38:29,821 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:39:30] 2025-10-13 09:38:29,823 | INFO     | ***************************************
[2025-10-13 05:39:30] 2025-10-13 09:38:29,823 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:39:30] 2025-10-13 09:38:29,823 | INFO     | ***************************************
[2025-10-13 05:39:30] 2025-10-13 09:38:29,823 | INFO     | 
[2025-10-13 05:39:30] 2025-10-13 09:38:29,824 | INFO     | architecture information:
[2025-10-13 05:39:30] 2025-10-13 09:38:29,825 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:39:30] 2025-10-13 09:38:29,838 | INFO     | cat /etc/os-release:
[2025-10-13 05:39:30] NAME="CentOS Linux"
[2025-10-13 05:39:30] VERSION="7 (Core)"
[2025-10-13 05:39:30] ID="centos"
[2025-10-13 05:39:30] ID_LIKE="rhel fedora"
[2025-10-13 05:39:30] VERSION_ID="7"
[2025-10-13 05:39:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:39:30] ANSI_COLOR="0;31"
[2025-10-13 05:39:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:39:30] HOME_URL="https://www.centos.org/"
[2025-10-13 05:39:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:39:30] 
[2025-10-13 05:39:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:39:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:39:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:39:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:39:30] 
[2025-10-13 05:39:30] 2025-10-13 09:38:29,838 | INFO     | ***************************************
[2025-10-13 05:39:30] 2025-10-13 09:38:30,342 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 05:39:30] 2025-10-13 09:38:30,360 | INFO     | sufficient remaining disk space (32765902848 B)
[2025-10-13 05:39:30] 2025-10-13 09:38:30,360 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:39:30] 2025-10-13 09:38:30,361 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:39:30] 2025-10-13 09:38:30,361 | INFO     | update_server=False
[2025-10-13 05:39:30] 2025-10-13 09:38:30,361 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:39:30] 2025-10-13 09:38:30,361 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:39:30] 2025-10-13 09:38:30,361 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:39:30] 2025-10-13 09:38:30,362 | INFO     | aborting loop
[2025-10-13 05:39:30] 2025-10-13 09:38:30,700 | INFO     | all data control threads have been joined
[2025-10-13 05:39:30] 2025-10-13 09:38:30,758 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:39:30] 2025-10-13 09:38:31,041 | INFO     | all payload control threads have been joined
[2025-10-13 05:39:30] 2025-10-13 09:38:31,366 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:31,367 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:31,367 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:31,688 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:39:30] 2025-10-13 09:38:31,706 | INFO     | [data] control thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:31,835 | INFO     | all job control threads have been joined
[2025-10-13 05:39:30] 2025-10-13 09:38:31,840 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:31,867 | INFO     | [job] validate thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:31,877 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:32,047 | INFO     | [payload] control thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:32,146 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:32,158 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:32,200 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:32,840 | INFO     | [job] control thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:32,840 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:33,693 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:34,764 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:38:40,767 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:39:30] 2025-10-13 09:38:41,772 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:39:30] 2025-10-13 09:39:00,540 | INFO     | PID=31320 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 05:39:30] 2025-10-13 09:39:00,541 | INFO     | .. there are 2 such processes running
[2025-10-13 05:39:30] 2025-10-13 09:39:00,541 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:39:30] 2025-10-13 09:39:00,541 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:39:30] 2025-10-13 09:39:00,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:39:30] 2025-10-13 09:39:25,307 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:39:30] 2025-10-13 09:39:25,533 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139777248741184)>', '<ExcThread(monitor, started 139776145483520)>']
[2025-10-13 05:39:30] 2025-10-13 09:39:25,667 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:39:30] 2025-10-13 09:39:25,667 | INFO     | [monitor] control thread has ended
[2025-10-13 05:39:30] 2025-10-13 09:39:30,558 | INFO     | all workflow threads have been joined
[2025-10-13 05:39:30] 2025-10-13 09:39:30,559 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:39:30] 2025-10-13 09:39:30,559 | INFO     | traces error code: 0
[2025-10-13 05:39:30] 2025-10-13 09:39:30,559 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:39:30] 2025-10-13 09:39:30,655 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:39:30] 2025-10-13 09:39:30,658 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:39:30] 2025-10-13 09:39:30,661 [wrapper] pilotpid: 31320
[2025-10-13 05:39:30] 2025-10-13 09:39:30,664 [wrapper] Pilot exit status: 0
[2025-10-13 05:39:30] 2025-10-13 09:39:30,674 [wrapper] pandaids: 6840851780
[2025-10-13 05:39:30] 2025-10-13 09:39:30,705 [wrapper] cleanup supervisor_pilot 12299 31321
[2025-10-13 05:39:30] 2025-10-13 09:39:30,708 [wrapper] Test setup, not cleaning
[2025-10-13 05:39:30] 2025-10-13 09:39:30,710 [wrapper] apfmon messages muted
[2025-10-13 05:39:30] 2025-10-13 09:39:30,713 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:39:30] 2025-10-13 09:39:30,715 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:39:30]  *** Error codes and diagnostics ***
[2025-10-13 05:39:30]     "exeErrorCode": 0,
[2025-10-13 05:39:30]     "exeErrorDiag": "",
[2025-10-13 05:39:30]     "pilotErrorCode": 0,
[2025-10-13 05:39:30]     "pilotErrorDiag": "",
[2025-10-13 05:39:30]  *** Listing of results directory ***
[2025-10-13 05:39:30] total 405740
[2025-10-13 05:39:30] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 05:39:30] -rwx------ 1 boincer umatlas     36292 Oct 12 18:18 runpilot2-wrapper.sh
[2025-10-13 05:39:30] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 18:18 queuedata.json
[2025-10-13 05:39:30] -rw-r--r-- 1 boincer umatlas       100 Oct 13 04:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:39:30] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 04:45 run_atlas
[2025-10-13 05:39:30] -rw-r--r-- 1 boincer umatlas       105 Oct 13 04:45 job.xml
[2025-10-13 05:39:30] -rw-r--r-- 2 boincer umatlas 219446787 Oct 13 04:45 EVNT.46676267._004610.pool.root.1
[2025-10-13 05:39:30] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 04:45 start_atlas.sh
[2025-10-13 05:39:30] drwxrwx--x 2 boincer umatlas      4096 Oct 13 04:45 shared
[2025-10-13 05:39:30] -rw-r--r-- 2 boincer umatlas    569676 Oct 13 04:45 input.tar.gz
[2025-10-13 05:39:30] -rw-r--r-- 1 boincer umatlas         0 Oct 13 04:45 boinc_lockfile
[2025-10-13 05:39:30] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 04:45 pandaJob.out
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas    972857 Oct 13 04:45 agis_schedconf.cvmfs.json
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas   1560580 Oct 13 04:45 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:39:30] drwx------ 5 boincer umatlas      4096 Oct 13 04:45 pilot3
[2025-10-13 05:39:30] -rw-r--r-- 1 boincer umatlas      6136 Oct 13 05:36 init_data.xml
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas 190536041 Oct 13 05:37 HITS.46676269._090959.pool.root.1
[2025-10-13 05:39:30] -rw-r--r-- 1 boincer umatlas       529 Oct 13 05:37 boinc_task_state.xml
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas      1045 Oct 13 05:38 memory_monitor_summary.json
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas    301267 Oct 13 05:38 log.46676269._090959.job.log.tgz.1
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas      7836 Oct 13 05:38 heartbeat.json
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas        95 Oct 13 05:39 pilot_heartbeat.json
[2025-10-13 05:39:30] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 05:39 boinc_mmap_file
[2025-10-13 05:39:30] -rw-r--r-- 1 boincer umatlas        27 Oct 13 05:39 wrapper_checkpoint.txt
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas      4893 Oct 13 05:39 pilotlog.txt
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas    494252 Oct 13 05:39 log.46676269._090959.job.log.1
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas       357 Oct 13 05:39 output.list
[2025-10-13 05:39:30] -rw-r--r-- 1 boincer umatlas       620 Oct 13 05:39 runtime_log
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas    819200 Oct 13 05:39 result.tar.gz
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas       654 Oct 13 05:39 u5lLDmlZJS8n9Rq4apOajLDm4fhM0noT9bVof3QYDma9UMDmLyLeWo.diag
[2025-10-13 05:39:30] -rw-r--r-- 1 boincer umatlas      8703 Oct 13 05:39 runtime_log.err
[2025-10-13 05:39:30] -rw-r--r-- 1 boincer umatlas     22584 Oct 13 05:39 stderr.txt
[2025-10-13 05:39:30] HITS file was successfully produced:
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas 190536041 Oct 13 05:37 shared/HITS.pool.root.1
[2025-10-13 05:39:30]  *** Contents of shared directory: ***
[2025-10-13 05:39:30] total 401760
[2025-10-13 05:39:30] -rw-r--r-- 2 boincer umatlas 219446787 Oct 13 04:45 ATLAS.root_0
[2025-10-13 05:39:30] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 04:45 start_atlas.sh
[2025-10-13 05:39:30] -rw-r--r-- 2 boincer umatlas    569676 Oct 13 04:45 input.tar.gz
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas 190536041 Oct 13 05:37 HITS.pool.root.1
[2025-10-13 05:39:30] -rw------- 1 boincer umatlas    819200 Oct 13 05:39 result.tar.gz
05:39:32 (27633): run_atlas exited; CPU time 23270.248528
05:39:32 (27633): called boinc_finish(0)

</stderr_txt>
]]>

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