Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:36:17 (3560139): wrapper (7.7.26015): starting
20:36:17 (3560139): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 20:36:17] Arguments: --nthreads 3
[2025-10-13 20:36:17] Threads: 3
[2025-10-13 20:36:17] Checking for CVMFS
[2025-10-13 20:36:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 20:36:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 20:36:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 20:36:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 20:36:18] 2.9.2.0 3205981 1236 61468 151670 3 57 30808893 36864001 0 130560 0 918333 99.991 42605 745 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 20:36:18] CVMFS is ok
[2025-10-13 20:36:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 20:36:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 20:36:18] Further information can be found at the LHC@home message board.
[2025-10-13 20:36:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 20:36:18] Checking for apptainer binary...
[2025-10-13 20:36:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 20:36:18] Running /usr/bin/apptainer --version
[2025-10-13 20:36:18] apptainer version 1.4.1-1.1
[2025-10-13 20:36:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 20:36:18] thA335
[2025-10-13 20:36:18] apptainer works
[2025-10-13 20:36:18] Set ATHENA_PROC_NUMBER=3
[2025-10-13 20:36:18] Set ATHENA_CORE_NUMBER=3
[2025-10-13 20:36:18] Starting ATLAS job with PandaID=6842448326
[2025-10-13 20:36:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 22:10:42]  *** The last 200 lines of the pilot log: ***
[2025-10-13 22:10:42] 2025-10-13 20:10:06,290 | INFO     | --- collectZombieJob: --- 10, [3570305]
[2025-10-13 22:10:42] 2025-10-13 20:10:06,290 | INFO     | zombie collector waiting for pid 3570305
[2025-10-13 22:10:42] 2025-10-13 20:10:06,291 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 22:10:42] 2025-10-13 20:10:06,291 | INFO     | collected zombie processes
[2025-10-13 22:10:42] 2025-10-13 20:10:06,291 | INFO     | will attempt to kill all subprocesses of pid=3570305
[2025-10-13 22:10:42] 2025-10-13 20:10:06,330 | INFO     | process IDs to be killed: [3570305] (in reverse order)
[2025-10-13 22:10:42] 2025-10-13 20:10:06,356 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 22:10:42] 2025-10-13 20:10:06,356 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 22:10:42] 2025-10-13 20:10:06,357 | INFO     | did not find any defunct processes belonging to 3570305
[2025-10-13 22:10:42] 2025-10-13 20:10:06,358 | INFO     | did not find any defunct processes belonging to 3570305
[2025-10-13 22:10:42] 2025-10-13 20:10:06,358 | INFO     | ready for new job
[2025-10-13 22:10:42] 2025-10-13 20:10:06,358 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 22:10:42] 2025-10-13 20:10:06,359 | INFO     | ***************************************
[2025-10-13 22:10:42] 2025-10-13 20:10:06,359 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 22:10:42] 2025-10-13 20:10:06,359 | INFO     | ***************************************
[2025-10-13 22:10:42] 2025-10-13 20:10:06,359 | INFO     | 
[2025-10-13 22:10:42] 2025-10-13 20:10:06,359 | INFO     | architecture information:
[2025-10-13 22:10:42] 2025-10-13 20:10:06,359 | INFO     | executing command: cat /etc/os-release
[2025-10-13 22:10:42] 2025-10-13 20:10:06,368 | INFO     | cat /etc/os-release:
[2025-10-13 22:10:42] NAME="CentOS Linux"
[2025-10-13 22:10:42] VERSION="7 (Core)"
[2025-10-13 22:10:42] ID="centos"
[2025-10-13 22:10:42] ID_LIKE="rhel fedora"
[2025-10-13 22:10:42] VERSION_ID="7"
[2025-10-13 22:10:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 22:10:42] ANSI_COLOR="0;31"
[2025-10-13 22:10:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 22:10:42] HOME_URL="https://www.centos.org/"
[2025-10-13 22:10:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 22:10:42] 
[2025-10-13 22:10:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 22:10:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 22:10:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 22:10:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 22:10:42] 
[2025-10-13 22:10:42] 2025-10-13 20:10:06,369 | INFO     | ***************************************
[2025-10-13 22:10:42] 2025-10-13 20:10:06,871 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 22:10:42] 2025-10-13 20:10:06,884 | INFO     | sufficient remaining disk space (832122650624 B)
[2025-10-13 22:10:42] 2025-10-13 20:10:06,884 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 22:10:42] 2025-10-13 20:10:06,884 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 22:10:42] 2025-10-13 20:10:06,884 | INFO     | update_server=False
[2025-10-13 22:10:42] 2025-10-13 20:10:06,884 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 22:10:42] 2025-10-13 20:10:06,885 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:10:42] 2025-10-13 20:10:07,227 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:10:42] 2025-10-13 20:10:07,227 | INFO     | aborting loop
[2025-10-13 22:10:42] 2025-10-13 20:10:07,380 | INFO     | all payload control threads have been joined
[2025-10-13 22:10:42] 2025-10-13 20:10:07,548 | INFO     | all data control threads have been joined
[2025-10-13 22:10:42] 2025-10-13 20:10:07,887 | INFO     | [job] queue monitor thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:07,888 | INFO     | [job] retrieve thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:08,030 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:08,036 | INFO     | [data] copytool_in thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:08,212 | INFO     | all job control threads have been joined
[2025-10-13 22:10:42] 2025-10-13 20:10:08,233 | INFO     | [job] job monitor thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:08,311 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:08,373 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 22:10:42] 2025-10-13 20:10:08,387 | INFO     | [payload] control thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:08,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 22:10:42] 2025-10-13 20:10:08,554 | INFO     | [data] control thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:08,856 | INFO     | [payload] validate_post thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:09,182 | INFO     | [payload] failed_post thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:09,218 | INFO     | [job] control thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:09,238 | INFO     | [job] validate thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:09,302 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:09,355 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:10,379 | INFO     | [data] copytool_out thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:12,545 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 22:10:42] 2025-10-13 20:10:37,511 | INFO     | PID=3563862 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 22:10:42] 2025-10-13 20:10:37,511 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 22:10:42] 2025-10-13 20:10:37,511 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 22:10:42] 2025-10-13 20:10:37,511 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 22:10:42] 2025-10-13 20:10:37,641 | INFO     | [monitor] cgroup control has ended
[2025-10-13 22:10:42] 2025-10-13 20:10:37,678 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140010593425216)>', '<ExcThread(monitor, started 140009801762560)>']
[2025-10-13 22:10:42] 2025-10-13 20:10:38,517 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 22:10:42] 2025-10-13 20:10:38,517 | INFO     | [monitor] control thread has ended
[2025-10-13 22:10:42] 2025-10-13 20:10:42,703 | INFO     | all workflow threads have been joined
[2025-10-13 22:10:42] 2025-10-13 20:10:42,705 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 22:10:42] 2025-10-13 20:10:42,705 | INFO     | traces error code: 0
[2025-10-13 22:10:42] 2025-10-13 20:10:42,706 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 22:10:42] 2025-10-13 20:10:42,756 [wrapper] ==== pilot stdout END ====
[2025-10-13 22:10:42] 2025-10-13 20:10:42,760 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 22:10:42] 2025-10-13 20:10:42,763 [wrapper] pilotpid: 3563862
[2025-10-13 22:10:42] 2025-10-13 20:10:42,766 [wrapper] Pilot exit status: 0
[2025-10-13 22:10:42] 2025-10-13 20:10:42,773 [wrapper] pandaids: 6842448326
[2025-10-13 22:10:42] 2025-10-13 20:10:42,790 [wrapper] cleanup supervisor_pilot 3583725 3563863
[2025-10-13 22:10:42] 2025-10-13 20:10:42,793 [wrapper] Test setup, not cleaning
[2025-10-13 22:10:42] 2025-10-13 20:10:42,796 [wrapper] apfmon messages muted
[2025-10-13 22:10:42] 2025-10-13 20:10:42,798 [wrapper] ==== wrapper stdout END ====
[2025-10-13 22:10:42] 2025-10-13 20:10:42,801 [wrapper] ==== wrapper stderr END ====
[2025-10-13 22:10:42]  *** Error codes and diagnostics ***
[2025-10-13 22:10:42]     "exeErrorCode": 0,
[2025-10-13 22:10:42]     "exeErrorDiag": "",
[2025-10-13 22:10:42]     "pilotErrorCode": 0,
[2025-10-13 22:10:42]     "pilotErrorDiag": "",
[2025-10-13 22:10:42]  *** Listing of results directory ***
[2025-10-13 22:10:42] total 408060
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc    557409 Oct 13 05:15 pilot3.tar.gz
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc      5112 Oct 13 05:59 queuedata.json
[2025-10-13 22:10:42] -rwx------ 1 boinc boinc     36292 Oct 13 06:00 runpilot2-wrapper.sh
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc       100 Oct 13 20:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 22:10:42] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 20:36 run_atlas
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc       105 Oct 13 20:36 job.xml
[2025-10-13 22:10:42] -rw-r--r-- 2 boinc boinc 219481618 Oct 13 20:36 EVNT.46676267._003169.pool.root.1
[2025-10-13 22:10:42] -rw-r--r-- 2 boinc boinc    569690 Oct 13 20:36 input.tar.gz
[2025-10-13 22:10:42] -rw-r--r-- 2 boinc boinc     15120 Oct 13 20:36 start_atlas.sh
[2025-10-13 22:10:42] drwxrwx--x 2 boinc boinc      4096 Oct 13 20:36 shared
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc         0 Oct 13 20:36 boinc_setup_complete
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc      6195 Oct 13 20:36 init_data.xml
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc         0 Oct 13 20:36 boinc_lockfile
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc      2550 Oct 13 20:36 pandaJob.out
[2025-10-13 22:10:42] -rw------- 1 boinc boinc    972799 Oct 13 20:36 agis_schedconf.cvmfs.json
[2025-10-13 22:10:42] -rw------- 1 boinc boinc   1560580 Oct 13 20:36 agis_ddmendpoints.agis.ALL.json
[2025-10-13 22:10:42] drwx------ 5 boinc boinc      4096 Oct 13 20:36 pilot3
[2025-10-13 22:10:42] -rw------- 1 boinc boinc 192310319 Oct 13 22:09 HITS.46676269._096226.pool.root.1
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc       529 Oct 13 22:09 boinc_task_state.xml
[2025-10-13 22:10:42] -rw------- 1 boinc boinc      1028 Oct 13 22:09 memory_monitor_summary.json
[2025-10-13 22:10:42] -rw------- 1 boinc boinc    268389 Oct 13 22:09 log.46676269._096226.job.log.tgz.1
[2025-10-13 22:10:42] -rw------- 1 boinc boinc        95 Oct 13 22:09 pilot_heartbeat.json
[2025-10-13 22:10:42] -rw------- 1 boinc boinc      7756 Oct 13 22:10 heartbeat.json
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc      8192 Oct 13 22:10 boinc_mmap_file
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc        27 Oct 13 22:10 wrapper_checkpoint.txt
[2025-10-13 22:10:42] -rw------- 1 boinc boinc      4752 Oct 13 22:10 pilotlog.txt
[2025-10-13 22:10:42] -rw------- 1 boinc boinc    819385 Oct 13 22:10 log.46676269._096226.job.log.1
[2025-10-13 22:10:42] -rw------- 1 boinc boinc       357 Oct 13 22:10 output.list
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc       620 Oct 13 22:10 runtime_log
[2025-10-13 22:10:42] -rw------- 1 boinc boinc   1105920 Oct 13 22:10 result.tar.gz
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc      8777 Oct 13 22:10 runtime_log.err
[2025-10-13 22:10:42] -rw------- 1 boinc boinc       658 Oct 13 22:10 JHQNDmOuOS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpgmNDm7cf1Io.diag
[2025-10-13 22:10:42] -rw-r--r-- 1 boinc boinc     10611 Oct 13 22:10 stderr.txt
[2025-10-13 22:10:42] HITS file was successfully produced:
[2025-10-13 22:10:42] -rw------- 1 boinc boinc 192310319 Oct 13 22:09 shared/HITS.pool.root.1
[2025-10-13 22:10:42]  *** Contents of shared directory: ***
[2025-10-13 22:10:42] total 403804
[2025-10-13 22:10:42] -rw-r--r-- 2 boinc boinc 219481618 Oct 13 20:36 ATLAS.root_0
[2025-10-13 22:10:42] -rw-r--r-- 2 boinc boinc    569690 Oct 13 20:36 input.tar.gz
[2025-10-13 22:10:42] -rw-r--r-- 2 boinc boinc     15120 Oct 13 20:36 start_atlas.sh
[2025-10-13 22:10:42] -rw------- 1 boinc boinc 192310319 Oct 13 22:09 HITS.pool.root.1
[2025-10-13 22:10:42] -rw------- 1 boinc boinc   1105920 Oct 13 22:10 result.tar.gz
22:10:44 (3560139): run_atlas exited; CPU time 16122.044217
22:10:44 (3560139): called boinc_finish(0)

</stderr_txt>
]]>

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