Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:32:06 (381145): wrapper (7.7.26015): starting
04:32:06 (381145): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 04:32:06] Arguments: --nthreads 8
[2025-10-13 04:32:06] Threads: 8
[2025-10-13 04:32:06] Checking for CVMFS
[2025-10-13 04:32:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:32:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:32:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:32:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:32:07] 2.13.2.0 5391 5410 85972 151654 0 65 18267086 40960001 12181 16776704 0 8963177 99.880 3208493 32048 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 04:32:07] CVMFS is ok
[2025-10-13 04:32:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:32:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:32:07] Further information can be found at the LHC@home message board.
[2025-10-13 04:32:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:32:07] Checking for apptainer binary...
[2025-10-13 04:32:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:32:07] Running /usr/bin/apptainer --version
[2025-10-13 04:32:07] apptainer version 1.4.3-1.el9
[2025-10-13 04:32:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:32:07] c-210-35-4.aglt2.org
[2025-10-13 04:32:07] apptainer works
[2025-10-13 04:32:07] Set ATHENA_PROC_NUMBER=8
[2025-10-13 04:32:07] Set ATHENA_CORE_NUMBER=8
[2025-10-13 04:32:07] Starting ATLAS job with PandaID=6842334695
[2025-10-13 04:32:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:16:38]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:16:38] 2025-10-13 10:15:54,697 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:16:38] 2025-10-13 10:15:54,697 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:16:38] 2025-10-13 10:15:54,698 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:16:38] 2025-10-13 10:15:54,698 | INFO     | sum of square deviations: 329031285.5
[2025-10-13 06:16:38] 2025-10-13 10:15:54,699 | INFO     | sum of deviations: -12933314519.5
[2025-10-13 06:16:38] 2025-10-13 10:15:54,699 | INFO     | mean x: 1760347455.5
[2025-10-13 06:16:38] 2025-10-13 10:15:54,699 | INFO     | mean y: 2576773.029411765
[2025-10-13 06:16:38] 2025-10-13 10:15:54,699 | INFO     | -- intersect: 69196991738.72432
[2025-10-13 06:16:38] 2025-10-13 10:15:54,699 | INFO     | intersect: 69196991738.72432
[2025-10-13 06:16:38] 2025-10-13 10:15:54,699 | INFO     | chi2: 2.2322043431888052
[2025-10-13 06:16:38] 2025-10-13 10:15:54,699 | INFO     | sum of square deviations: 282974608.0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,699 | INFO     | sum of deviations: -5285985378.0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,699 | INFO     | mean x: 1760347303.0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,700 | INFO     | mean y: 2601265.9484536084
[2025-10-13 06:16:38] 2025-10-13 10:15:54,700 | INFO     | -- intersect: 32886011440.54523
[2025-10-13 06:16:38] 2025-10-13 10:15:54,700 | INFO     | intersect: 32886011440.54523
[2025-10-13 06:16:38] 2025-10-13 10:15:54,700 | INFO     | chi2: 1.5658359140569356
[2025-10-13 06:16:38] 2025-10-13 10:15:54,700 | INFO     | current chi2=1.5658359140569356 (change=29.8524833161077 %)
[2025-10-13 06:16:38] 2025-10-13 10:15:54,700 | INFO     | sum of square deviations: 241429643.0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,700 | INFO     | sum of deviations: -4100961130.9999995
[2025-10-13 06:16:38] 2025-10-13 10:15:54,700 | INFO     | mean x: 1760347150.5
[2025-10-13 06:16:38] 2025-10-13 10:15:54,700 | INFO     | mean y: 2605619.934782609
[2025-10-13 06:16:38] 2025-10-13 10:15:54,700 | INFO     | -- intersect: 29904133665.79743
[2025-10-13 06:16:38] 2025-10-13 10:15:54,700 | INFO     | intersect: 29904133665.79743
[2025-10-13 06:16:38] 2025-10-13 10:15:54,700 | INFO     | chi2: 1.568477313440003
[2025-10-13 06:16:38] 2025-10-13 10:15:54,700 | INFO     | current chi2=1.568477313440003 (change=-0.16868941115444078 %)
[2025-10-13 06:16:38] 2025-10-13 10:15:54,701 | INFO     | right removable region: 91
[2025-10-13 06:16:38] 2025-10-13 10:15:54,701 | INFO     | sum of square deviations: 282974608.0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,701 | INFO     | sum of deviations: -27495009643.000008
[2025-10-13 06:16:38] 2025-10-13 10:15:54,701 | INFO     | mean x: 1760347608.0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,701 | INFO     | mean y: 2623818.2783505153
[2025-10-13 06:16:38] 2025-10-13 10:15:54,701 | INFO     | -- intersect: 171045442108.85797
[2025-10-13 06:16:38] 2025-10-13 10:15:54,701 | INFO     | intersect: 171045442108.85797
[2025-10-13 06:16:38] 2025-10-13 10:15:54,701 | INFO     | chi2: 0.8045494144233111
[2025-10-13 06:16:38] 2025-10-13 10:15:54,701 | INFO     | current chi2=0.8045494144233111 (change=63.95717906031956 %)
[2025-10-13 06:16:38] 2025-10-13 10:15:54,701 | INFO     | sum of square deviations: 241429643.0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,702 | INFO     | sum of deviations: -25355727168.5
[2025-10-13 06:16:38] 2025-10-13 10:15:54,702 | INFO     | mean x: 1760347760.5
[2025-10-13 06:16:38] 2025-10-13 10:15:54,702 | INFO     | mean y: 2615810.163043478
[2025-10-13 06:16:38] 2025-10-13 10:15:54,702 | INFO     | -- intersect: 184880069060.25122
[2025-10-13 06:16:38] 2025-10-13 10:15:54,702 | INFO     | intersect: 184880069060.25122
[2025-10-13 06:16:38] 2025-10-13 10:15:54,702 | INFO     | chi2: 0.7917328727053285
[2025-10-13 06:16:38] 2025-10-13 10:15:54,702 | INFO     | current chi2=0.7917328727053285 (change=1.59300864412029 %)
[2025-10-13 06:16:38] 2025-10-13 10:15:54,702 | INFO     | left removable region: 20
[2025-10-13 06:16:38] 2025-10-13 10:15:54,702 | INFO     | sum of square deviations: 110960220.0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,702 | INFO     | sum of deviations: -10488651344.0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,702 | INFO     | mean x: 1760347730.0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,702 | INFO     | mean y: 2623845.971830986
[2025-10-13 06:16:38] 2025-10-13 10:15:54,702 | INFO     | -- intersect: 166401659321.6752
[2025-10-13 06:16:38] 2025-10-13 10:15:54,703 | INFO     | intersect: 166401659321.6752
[2025-10-13 06:16:38] 2025-10-13 10:15:54,703 | INFO     | chi2: 0.06924170202859474
[2025-10-13 06:16:38] 2025-10-13 10:15:54,703 | INFO     | -- intersect: 166401659321.6752
[2025-10-13 06:16:38] 2025-10-13 10:15:54,703 | INFO     | current memory leak: -94.53 B/s (using 71 data points, chi2=0.07)
[2025-10-13 06:16:38] 2025-10-13 10:15:54,703 | INFO     | could have reported an average CPU frequency of 2732 MHz (7 samples)
[2025-10-13 06:16:38] 2025-10-13 10:15:54,703 | INFO     | ..............................
[2025-10-13 06:16:38] 2025-10-13 10:15:54,703 | INFO     | . Timing measurements:
[2025-10-13 06:16:38] 2025-10-13 10:15:54,703 | INFO     | . get job = 0 s
[2025-10-13 06:16:38] 2025-10-13 10:15:54,703 | INFO     | . initial setup = 2 s
[2025-10-13 06:16:38] 2025-10-13 10:15:54,703 | INFO     | . payload setup = 8 s
[2025-10-13 06:16:38] 2025-10-13 10:15:54,704 | INFO     | . stage-in = 0 s
[2025-10-13 06:16:38] 2025-10-13 10:15:54,704 | INFO     | . payload execution = 6175 s
[2025-10-13 06:16:38] 2025-10-13 10:15:54,704 | INFO     | . stage-out = 0 s
[2025-10-13 06:16:38] 2025-10-13 10:15:54,704 | INFO     | . log creation = 0 s
[2025-10-13 06:16:38] 2025-10-13 10:15:54,704 | INFO     | ..............................
[2025-10-13 06:16:38] 2025-10-13 10:15:54,756 | INFO     | 
[2025-10-13 06:16:38] 2025-10-13 10:15:54,756 | INFO     | job summary report
[2025-10-13 06:16:38] 2025-10-13 10:15:54,756 | INFO     | --------------------------------------------------
[2025-10-13 06:16:38] 2025-10-13 10:15:54,756 | INFO     | PanDA job id: 6842334695
[2025-10-13 06:16:38] 2025-10-13 10:15:54,756 | INFO     | task id: 46676269
[2025-10-13 06:16:38] 2025-10-13 10:15:54,756 | INFO     | errors: (none)
[2025-10-13 06:16:38] 2025-10-13 10:15:54,756 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:16:38] 2025-10-13 10:15:54,756 | INFO     | pilot state: finished 
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | transexitcode: 0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | exeerrorcode: 0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | exeerrordiag: 
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | exitcode: 0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | exitmsg: OK
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | cpuconsumptiontime: 40264 s
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | nevents: 400
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | neventsw: 0
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | pid: 391235
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | pgrp: 391235
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | corecount: 8
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | event service: False
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | sizes: {0: 2348636, 1: 2348835, 8: 2349097, 11: 2349125, 6188: 2375824, 6189: 2384822, 6190: 2385006, 6195: 2385200}
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | --------------------------------------------------
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | 
[2025-10-13 06:16:38] 2025-10-13 10:15:54,757 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 06:16:38] 2025-10-13 10:15:54,775 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,775 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,775 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,775 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,775 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,775 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,775 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | job 6842334695 has completed (purged errors)
[2025-10-13 06:16:38] 2025-10-13 10:15:54,776 | INFO     | overall cleanup function is called
[2025-10-13 06:16:38] 2025-10-13 10:15:55,781 | INFO     | --- collectZombieJob: --- 10, [391235]
[2025-10-13 06:16:38] 2025-10-13 10:15:55,782 | INFO     | zombie collector waiting for pid 391235
[2025-10-13 06:16:38] 2025-10-13 10:15:55,782 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:16:38] 2025-10-13 10:15:55,782 | INFO     | collected zombie processes
[2025-10-13 06:16:38] 2025-10-13 10:15:55,782 | INFO     | will attempt to kill all subprocesses of pid=391235
[2025-10-13 06:16:38] 2025-10-13 10:15:55,991 | INFO     | process IDs to be killed: [391235] (in reverse order)
[2025-10-13 06:16:38] 2025-10-13 10:15:56,058 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:16:38] 2025-10-13 10:15:56,059 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:16:38] 2025-10-13 10:15:56,067 | INFO     | did not find any defunct processes belonging to 391235
[2025-10-13 06:16:38] 2025-10-13 10:15:56,074 | INFO     | did not find any defunct processes belonging to 391235
[2025-10-13 06:16:38] 2025-10-13 10:15:56,075 | INFO     | ready for new job
[2025-10-13 06:16:38] 2025-10-13 10:15:56,075 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:16:38] 2025-10-13 10:15:56,077 | INFO     | ***************************************
[2025-10-13 06:16:38] 2025-10-13 10:15:56,077 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:16:38] 2025-10-13 10:15:56,077 | INFO     | ***************************************
[2025-10-13 06:16:38] 2025-10-13 10:15:56,077 | INFO     | 
[2025-10-13 06:16:38] 2025-10-13 10:15:56,080 | INFO     | architecture information:
[2025-10-13 06:16:38] 2025-10-13 10:15:56,081 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:16:38] 2025-10-13 10:15:56,099 | INFO     | cat /etc/os-release:
[2025-10-13 06:16:38] NAME="CentOS Linux"
[2025-10-13 06:16:38] VERSION="7 (Core)"
[2025-10-13 06:16:38] ID="centos"
[2025-10-13 06:16:38] ID_LIKE="rhel fedora"
[2025-10-13 06:16:38] VERSION_ID="7"
[2025-10-13 06:16:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:16:38] ANSI_COLOR="0;31"
[2025-10-13 06:16:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:16:38] HOME_URL="https://www.centos.org/"
[2025-10-13 06:16:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:16:38] 
[2025-10-13 06:16:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:16:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:16:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:16:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:16:38] 
[2025-10-13 06:16:38] 2025-10-13 10:15:56,100 | INFO     | ***************************************
[2025-10-13 06:16:38] 2025-10-13 10:15:56,602 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 06:16:38] 2025-10-13 10:15:56,620 | INFO     | sufficient remaining disk space (74265395200 B)
[2025-10-13 06:16:38] 2025-10-13 10:15:56,620 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:16:38] 2025-10-13 10:15:56,620 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:16:38] 2025-10-13 10:15:56,621 | INFO     | update_server=False
[2025-10-13 06:16:38] 2025-10-13 10:15:56,621 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:16:38] 2025-10-13 10:15:56,621 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:16:38] 2025-10-13 10:15:56,621 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:16:38] 2025-10-13 10:15:57,053 | INFO     | all job control threads have been joined
[2025-10-13 06:16:38] 2025-10-13 10:15:57,409 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:16:38] 2025-10-13 10:15:57,409 | INFO     | aborting loop
[2025-10-13 06:16:38] 2025-10-13 10:15:57,483 | INFO     | all data control threads have been joined
[2025-10-13 06:16:38] 2025-10-13 10:15:57,622 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:16:38] 2025-10-13 10:15:57,624 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:15:57,625 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:15:57,644 | INFO     | all payload control threads have been joined
[2025-10-13 06:16:38] 2025-10-13 10:15:57,920 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:15:57,926 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:15:58,058 | INFO     | [job] control thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:15:58,065 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:15:58,220 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:15:58,414 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:15:58,488 | INFO     | [data] control thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:15:58,649 | INFO     | [payload] control thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:15:58,803 | INFO     | [job] validate thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:15:58,847 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:15:58,928 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:15:59,628 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:16:00,628 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:16:07,205 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:16:38] 2025-10-13 10:16:08,211 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:16:38] 2025-10-13 10:16:26,873 | INFO     | PID=384817 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 06:16:38] 2025-10-13 10:16:26,873 | INFO     | .. there are 8 such processes running
[2025-10-13 06:16:38] 2025-10-13 10:16:26,874 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:16:38] 2025-10-13 10:16:26,874 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:16:38] 2025-10-13 10:16:26,874 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:16:38] 2025-10-13 10:16:33,065 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:16:38] 2025-10-13 10:16:33,196 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140054604588864)>', '<ExcThread(monitor, started 140053380593408)>']
[2025-10-13 06:16:38] 2025-10-13 10:16:33,909 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:16:38] 2025-10-13 10:16:33,909 | INFO     | [monitor] control thread has ended
[2025-10-13 06:16:38] 2025-10-13 10:16:38,221 | INFO     | all workflow threads have been joined
[2025-10-13 06:16:38] 2025-10-13 10:16:38,222 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:16:38] 2025-10-13 10:16:38,222 | INFO     | traces error code: 0
[2025-10-13 06:16:38] 2025-10-13 10:16:38,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:16:38] 2025-10-13 10:16:38,364 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:16:38] 2025-10-13 10:16:38,367 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:16:38] 2025-10-13 10:16:38,371 [wrapper] pilotpid: 384817
[2025-10-13 06:16:38] 2025-10-13 10:16:38,374 [wrapper] Pilot exit status: 0
[2025-10-13 06:16:38] 2025-10-13 10:16:38,385 [wrapper] pandaids: 6842334695
[2025-10-13 06:16:38] 2025-10-13 10:16:38,432 [wrapper] cleanup supervisor_pilot  507098 384818
[2025-10-13 06:16:38] 2025-10-13 10:16:38,435 [wrapper] Test setup, not cleaning
[2025-10-13 06:16:38] 2025-10-13 10:16:38,439 [wrapper] apfmon messages muted
[2025-10-13 06:16:38] 2025-10-13 10:16:38,442 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:16:38] 2025-10-13 10:16:38,445 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:16:38]  *** Error codes and diagnostics ***
[2025-10-13 06:16:38]     "exeErrorCode": 0,
[2025-10-13 06:16:38]     "exeErrorDiag": "",
[2025-10-13 06:16:38]     "pilotErrorCode": 0,
[2025-10-13 06:16:38]     "pilotErrorDiag": "",
[2025-10-13 06:16:38]  *** Listing of results directory ***
[2025-10-13 06:16:38] total 413508
[2025-10-13 06:16:38] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 23:15 pilot3.tar.gz
[2025-10-13 06:16:38] -rwx------. 1 boincer umatlas     36292 Oct 12 23:41 runpilot2-wrapper.sh
[2025-10-13 06:16:38] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 23:41 queuedata.json
[2025-10-13 06:16:38] -rw-r--r--. 1 boincer umatlas       100 Oct 13 04:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:16:38] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 04:32 run_atlas
[2025-10-13 06:16:38] -rw-r--r--. 1 boincer umatlas       105 Oct 13 04:32 job.xml
[2025-10-13 06:16:38] -rw-r--r--. 2 boincer umatlas 222042639 Oct 13 04:32 EVNT.46676267._002544.pool.root.1
[2025-10-13 06:16:38] -rw-r--r--. 2 boincer umatlas    569687 Oct 13 04:32 input.tar.gz
[2025-10-13 06:16:38] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 04:32 start_atlas.sh
[2025-10-13 06:16:38] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 04:32 shared
[2025-10-13 06:16:38] -rw-r--r--. 1 boincer umatlas         0 Oct 13 04:32 boinc_lockfile
[2025-10-13 06:16:38] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 04:32 pandaJob.out
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas    972857 Oct 13 04:32 agis_schedconf.cvmfs.json
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas   1560580 Oct 13 04:32 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:16:38] drwx------. 5 boincer umatlas      4096 Oct 13 04:32 pilot3
[2025-10-13 06:16:38] -rw-r--r--. 1 boincer umatlas      6839 Oct 13 06:09 init_data.xml
[2025-10-13 06:16:38] -rw-r--r--. 1 boincer umatlas       530 Oct 13 06:15 boinc_task_state.xml
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas 195029154 Oct 13 06:15 HITS.46676269._096091.pool.root.1
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas      1038 Oct 13 06:15 memory_monitor_summary.json
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas    344365 Oct 13 06:15 log.46676269._096091.job.log.tgz.1
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas      7837 Oct 13 06:15 heartbeat.json
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas        95 Oct 13 06:16 pilot_heartbeat.json
[2025-10-13 06:16:38] -rw-r--r--. 1 boincer umatlas        27 Oct 13 06:16 wrapper_checkpoint.txt
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas      4894 Oct 13 06:16 pilotlog.txt
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas    886437 Oct 13 06:16 log.46676269._096091.job.log.1
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas       357 Oct 13 06:16 output.list
[2025-10-13 06:16:38] -rw-r--r--. 1 boincer umatlas       620 Oct 13 06:16 runtime_log
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas   1249280 Oct 13 06:16 result.tar.gz
[2025-10-13 06:16:38] -rw-r--r--. 1 boincer umatlas      8713 Oct 13 06:16 runtime_log.err
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas       654 Oct 13 06:16 kk7KDmCcOS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmpfVMDmr2BLHm.diag
[2025-10-13 06:16:38] -rw-r--r--. 1 boincer umatlas     20858 Oct 13 06:16 stderr.txt
[2025-10-13 06:16:38] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 06:16 boinc_mmap_file
[2025-10-13 06:16:38] HITS file was successfully produced:
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas 195029154 Oct 13 06:15 shared/HITS.pool.root.1
[2025-10-13 06:16:38]  *** Contents of shared directory: ***
[2025-10-13 06:16:38] total 409100
[2025-10-13 06:16:38] -rw-r--r--. 2 boincer umatlas 222042639 Oct 13 04:32 ATLAS.root_0
[2025-10-13 06:16:38] -rw-r--r--. 2 boincer umatlas    569687 Oct 13 04:32 input.tar.gz
[2025-10-13 06:16:38] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 04:32 start_atlas.sh
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas 195029154 Oct 13 06:15 HITS.pool.root.1
[2025-10-13 06:16:38] -rw-------. 1 boincer umatlas   1249280 Oct 13 06:16 result.tar.gz
06:16:40 (381145): run_atlas exited; CPU time 40364.674827
06:16:40 (381145): called boinc_finish(0)

</stderr_txt>
]]>

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