Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:44:40 (5237): wrapper (7.7.26015): starting
11:44:40 (5237): wrapper: running run_atlas (--nthreads 8)
[2025-10-14 11:44:40] Arguments: --nthreads 8
[2025-10-14 11:44:40] Threads: 8
[2025-10-14 11:44:40] Checking for CVMFS
[2025-10-14 11:44:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 11:44:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 11:44:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 11:44:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 11:44:43] 2.11.2.0 8404 223291 143116 151692 1 61 15228302 25165824 4632 130560 0 124005905 99.892 67761851 4118 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-14 11:44:43] CVMFS is ok
[2025-10-14 11:44:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 11:44:43] Checking for apptainer binary...
[2025-10-14 11:44:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 11:44:43] Running /usr/bin/apptainer --version
[2025-10-14 11:44:43] apptainer version 1.3.2-1.el7
[2025-10-14 11:44:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 11:45:02] cg-vwn309.simple-grid.lan
[2025-10-14 11:45:02] apptainer works
[2025-10-14 11:45:02] Set ATHENA_PROC_NUMBER=8
[2025-10-14 11:45:02] Set ATHENA_CORE_NUMBER=8
[2025-10-14 11:45:02] Starting ATLAS job with PandaID=6842091888
[2025-10-14 11:45:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 15:35:53]  *** The last 200 lines of the pilot log: ***
[2025-10-14 15:35:53] 2025-10-14 13:34:39,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 15:35:53] 2025-10-14 13:34:41,119 | INFO     | time since job start (13582s) is within the limit (172800.0s)
[2025-10-14 15:35:53] 2025-10-14 13:34:41,382 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 15:35:53] 2025-10-14 13:34:41,382 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-14 15:35:53] 2025-10-14 13:34:41,384 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6842091888/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 15:35:53] 2025-10-14 13:34:41,385 | INFO     | extracted standard info from prmon json
[2025-10-14 15:35:53] 2025-10-14 13:34:41,385 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 15:35:53] 2025-10-14 13:34:41,385 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 15:35:53] 2025-10-14 13:34:41,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 15:35:53] 2025-10-14 13:34:41,386 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 15:35:53] 2025-10-14 13:34:41,390 | INFO     | fitting pss+swap vs Time
[2025-10-14 15:35:53] 2025-10-14 13:34:41,391 | INFO     | sum of square deviations: 3038856977.5
[2025-10-14 15:35:53] 2025-10-14 13:34:41,392 | INFO     | sum of deviations: 76090829314.5
[2025-10-14 15:35:53] 2025-10-14 13:34:41,392 | INFO     | mean x: 1760442254.5
[2025-10-14 15:35:53] 2025-10-14 13:34:41,392 | INFO     | mean y: 2429170.9112149533
[2025-10-14 15:35:53] 2025-10-14 13:34:41,392 | INFO     | -- intersect: -44077799710.21028
[2025-10-14 15:35:53] 2025-10-14 13:34:41,393 | INFO     | intersect: -44077799710.21028
[2025-10-14 15:35:53] 2025-10-14 13:34:41,393 | INFO     | chi2: 4.810802967411643
[2025-10-14 15:35:53] 2025-10-14 13:34:41,393 | INFO     | sum of square deviations: 2830787960.0
[2025-10-14 15:35:53] 2025-10-14 13:34:41,395 | INFO     | sum of deviations: 88106952531.00002
[2025-10-14 15:35:53] 2025-10-14 13:34:41,395 | INFO     | mean x: 1760442102.0
[2025-10-14 15:35:53] 2025-10-14 13:34:41,395 | INFO     | mean y: 2437781.923444976
[2025-10-14 15:35:53] 2025-10-14 13:34:41,395 | INFO     | -- intersect: -54790500052.41999
[2025-10-14 15:35:53] 2025-10-14 13:34:41,395 | INFO     | intersect: -54790500052.41999
[2025-10-14 15:35:53] 2025-10-14 13:34:41,395 | INFO     | chi2: 4.0732028613243845
[2025-10-14 15:35:53] 2025-10-14 13:34:41,395 | INFO     | current chi2=4.0732028613243845 (change=15.332162033734456 %)
[2025-10-14 15:35:53] 2025-10-14 13:34:41,395 | INFO     | right removable region: 208
[2025-10-14 15:35:53] 2025-10-14 13:34:41,396 | INFO     | sum of square deviations: 2830787960.0
[2025-10-14 15:35:53] 2025-10-14 13:34:41,397 | INFO     | sum of deviations: 9235447091.999996
[2025-10-14 15:35:53] 2025-10-14 13:34:41,397 | INFO     | mean x: 1760442407.0
[2025-10-14 15:35:53] 2025-10-14 13:34:41,397 | INFO     | mean y: 2478072.9186602873
[2025-10-14 15:35:53] 2025-10-14 13:34:41,397 | INFO     | -- intersect: -5740966133.464647
[2025-10-14 15:35:53] 2025-10-14 13:34:41,398 | INFO     | intersect: -5740966133.464647
[2025-10-14 15:35:53] 2025-10-14 13:34:41,398 | INFO     | chi2: 0.970942155748016
[2025-10-14 15:35:53] 2025-10-14 13:34:41,398 | INFO     | current chi2=0.970942155748016 (change=79.8174616103554 %)
[2025-10-14 15:35:53] 2025-10-14 13:34:41,398 | INFO     | sum of square deviations: 2632440055.0
[2025-10-14 15:35:53] 2025-10-14 13:34:41,400 | INFO     | sum of deviations: -1176468722.4999943
[2025-10-14 15:35:53] 2025-10-14 13:34:41,400 | INFO     | mean x: 1760442559.5
[2025-10-14 15:35:53] 2025-10-14 13:34:41,400 | INFO     | mean y: 2485991.5833333335
[2025-10-14 15:35:53] 2025-10-14 13:34:41,400 | INFO     | -- intersect: 789248677.8127013
[2025-10-14 15:35:53] 2025-10-14 13:34:41,400 | INFO     | intersect: 789248677.8127013
[2025-10-14 15:35:53] 2025-10-14 13:34:41,400 | INFO     | chi2: 0.8306509468400312
[2025-10-14 15:35:53] 2025-10-14 13:34:41,400 | INFO     | current chi2=0.8306509468400312 (change=14.448977014485914 %)
[2025-10-14 15:35:53] 2025-10-14 13:34:41,400 | INFO     | left removable region: 20
[2025-10-14 15:35:53] 2025-10-14 13:34:41,401 | INFO     | sum of square deviations: 2060343747.0
[2025-10-14 15:35:53] 2025-10-14 13:34:41,402 | INFO     | sum of deviations: 5985289805.0
[2025-10-14 15:35:53] 2025-10-14 13:34:41,402 | INFO     | mean x: 1760442681.5
[2025-10-14 15:35:53] 2025-10-14 13:34:41,402 | INFO     | mean y: 2501528.425531915
[2025-10-14 15:35:53] 2025-10-14 13:34:41,402 | INFO     | -- intersect: -5111576959.307909
[2025-10-14 15:35:53] 2025-10-14 13:34:41,402 | INFO     | intersect: -5111576959.307909
[2025-10-14 15:35:53] 2025-10-14 13:34:41,402 | INFO     | chi2: 0.0024035918684429452
[2025-10-14 15:35:53] 2025-10-14 13:34:41,403 | INFO     | -- intersect: -5111576959.307909
[2025-10-14 15:35:53] 2025-10-14 13:34:41,403 | INFO     | current memory leak: 2.90 B/s (using 188 data points, chi2=0.00)
[2025-10-14 15:35:53] 2025-10-14 13:34:41,403 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2025-10-14 15:35:53] 2025-10-14 13:34:41,403 | INFO     | ..............................
[2025-10-14 15:35:53] 2025-10-14 13:34:41,403 | INFO     | . Timing measurements:
[2025-10-14 15:35:53] 2025-10-14 13:34:41,403 | INFO     | . get job = 0 s
[2025-10-14 15:35:53] 2025-10-14 13:34:41,404 | INFO     | . initial setup = 6 s
[2025-10-14 15:35:53] 2025-10-14 13:34:41,404 | INFO     | . payload setup = 120 s
[2025-10-14 15:35:53] 2025-10-14 13:34:41,404 | INFO     | . stage-in = 0 s
[2025-10-14 15:35:53] 2025-10-14 13:34:41,404 | INFO     | . payload execution = 13170 s
[2025-10-14 15:35:53] 2025-10-14 13:34:41,404 | INFO     | . stage-out = 3 s
[2025-10-14 15:35:53] 2025-10-14 13:34:41,404 | INFO     | . log creation = 1 s
[2025-10-14 15:35:53] 2025-10-14 13:34:41,404 | INFO     | ..............................
[2025-10-14 15:35:53] 2025-10-14 13:34:42,005 | INFO     | 
[2025-10-14 15:35:53] 2025-10-14 13:34:42,006 | INFO     | job summary report
[2025-10-14 15:35:53] 2025-10-14 13:34:42,006 | INFO     | --------------------------------------------------
[2025-10-14 15:35:53] 2025-10-14 13:34:42,006 | INFO     | PanDA job id: 6842091888
[2025-10-14 15:35:53] 2025-10-14 13:34:42,006 | INFO     | task id: 46676269
[2025-10-14 15:35:53] 2025-10-14 13:34:42,006 | INFO     | errors: (none)
[2025-10-14 15:35:53] 2025-10-14 13:34:42,006 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 15:35:53] 2025-10-14 13:34:42,006 | INFO     | pilot state: finished 
[2025-10-14 15:35:53] 2025-10-14 13:34:42,006 | INFO     | transexitcode: 0
[2025-10-14 15:35:53] 2025-10-14 13:34:42,006 | INFO     | exeerrorcode: 0
[2025-10-14 15:35:53] 2025-10-14 13:34:42,006 | INFO     | exeerrordiag: 
[2025-10-14 15:35:53] 2025-10-14 13:34:42,007 | INFO     | exitcode: 0
[2025-10-14 15:35:53] 2025-10-14 13:34:42,007 | INFO     | exitmsg: OK
[2025-10-14 15:35:53] 2025-10-14 13:34:42,007 | INFO     | cpuconsumptiontime: 48760 s
[2025-10-14 15:35:53] 2025-10-14 13:34:42,007 | INFO     | nevents: 400
[2025-10-14 15:35:53] 2025-10-14 13:34:42,007 | INFO     | neventsw: 0
[2025-10-14 15:35:53] 2025-10-14 13:34:42,007 | INFO     | pid: 15600
[2025-10-14 15:35:53] 2025-10-14 13:34:42,007 | INFO     | pgrp: 15600
[2025-10-14 15:35:53] 2025-10-14 13:34:42,007 | INFO     | corecount: 8
[2025-10-14 15:35:53] 2025-10-14 13:34:42,007 | INFO     | event service: False
[2025-10-14 15:35:53] 2025-10-14 13:34:42,007 | INFO     | sizes: {0: 2348581, 1: 2348836, 12: 2348836, 23: 2348864, 33: 2348892, 44: 2348948, 55: 2349104, 66: 2349132, 76: 2349160, 87: 2349216, 91: 2349506, 98: 2349814, 1
[2025-10-14 15:35:53] 2025-10-14 13:34:42,007 | INFO     | --------------------------------------------------
[2025-10-14 15:35:53] 2025-10-14 13:34:42,008 | INFO     | 
[2025-10-14 15:35:53] 2025-10-14 13:34:42,008 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-10-14 15:35:53] 2025-10-14 13:34:42,577 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,577 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,577 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,577 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,577 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,577 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,578 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,578 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,578 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,578 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,578 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,578 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,578 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,578 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,579 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 15:35:53] 2025-10-14 13:34:42,579 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,579 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 15:35:53] 2025-10-14 13:34:42,579 | INFO     | job 6842091888 has completed (purged errors)
[2025-10-14 15:35:53] 2025-10-14 13:34:42,579 | INFO     | overall cleanup function is called
[2025-10-14 15:35:53] 2025-10-14 13:34:43,588 | INFO     | --- collectZombieJob: --- 10, [15600]
[2025-10-14 15:35:53] 2025-10-14 13:34:43,589 | INFO     | zombie collector waiting for pid 15600
[2025-10-14 15:35:53] 2025-10-14 13:34:43,589 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 15:35:53] 2025-10-14 13:34:43,589 | INFO     | collected zombie processes
[2025-10-14 15:35:53] 2025-10-14 13:34:43,589 | INFO     | will attempt to kill all subprocesses of pid=15600
[2025-10-14 15:35:53] 2025-10-14 13:34:43,711 | INFO     | process IDs to be killed: [15600] (in reverse order)
[2025-10-14 15:35:53] 2025-10-14 13:34:44,650 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 15:35:53] 2025-10-14 13:34:44,650 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 15:35:53] 2025-10-14 13:34:44,653 | INFO     | did not find any defunct processes belonging to 15600
[2025-10-14 15:35:53] 2025-10-14 13:34:44,655 | INFO     | did not find any defunct processes belonging to 15600
[2025-10-14 15:35:53] 2025-10-14 13:34:44,655 | INFO     | ready for new job
[2025-10-14 15:35:53] 2025-10-14 13:34:44,656 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 15:35:53] 2025-10-14 13:34:44,657 | INFO     | ***************************************
[2025-10-14 15:35:53] 2025-10-14 13:34:44,658 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 15:35:53] 2025-10-14 13:34:44,658 | INFO     | ***************************************
[2025-10-14 15:35:53] 2025-10-14 13:34:44,658 | INFO     | 
[2025-10-14 15:35:53] 2025-10-14 13:34:44,658 | INFO     | pilot is running in a VM
[2025-10-14 15:35:53] 2025-10-14 13:34:44,659 | INFO     | architecture information:
[2025-10-14 15:35:53] 2025-10-14 13:34:44,672 | INFO     | executing command: cat /etc/os-release
[2025-10-14 15:35:53] 2025-10-14 13:34:44,872 | INFO     | cat /etc/os-release:
[2025-10-14 15:35:53] NAME="CentOS Linux"
[2025-10-14 15:35:53] VERSION="7 (Core)"
[2025-10-14 15:35:53] ID="centos"
[2025-10-14 15:35:53] ID_LIKE="rhel fedora"
[2025-10-14 15:35:53] VERSION_ID="7"
[2025-10-14 15:35:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 15:35:53] ANSI_COLOR="0;31"
[2025-10-14 15:35:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 15:35:53] HOME_URL="https://www.centos.org/"
[2025-10-14 15:35:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 15:35:53] 
[2025-10-14 15:35:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 15:35:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 15:35:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 15:35:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 15:35:53] 
[2025-10-14 15:35:53] 2025-10-14 13:34:44,872 | INFO     | ***************************************
[2025-10-14 15:35:53] 2025-10-14 13:34:45,375 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-10-14 15:35:53] 2025-10-14 13:34:45,625 | INFO     | sufficient remaining disk space (496321429504 B)
[2025-10-14 15:35:53] 2025-10-14 13:34:45,625 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 15:35:53] 2025-10-14 13:34:45,625 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 15:35:53] 2025-10-14 13:34:45,625 | INFO     | update_server=False
[2025-10-14 15:35:53] 2025-10-14 13:34:45,625 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 15:35:53] 2025-10-14 13:34:45,739 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 15:35:53] 2025-10-14 13:34:45,740 | INFO     | aborting loop
[2025-10-14 15:35:53] 2025-10-14 13:34:45,946 | INFO     | all job control threads have been joined
[2025-10-14 15:35:53] 2025-10-14 13:34:46,324 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 15:35:53] 2025-10-14 13:34:46,444 | INFO     | all data control threads have been joined
[2025-10-14 15:35:53] 2025-10-14 13:34:46,559 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 15:35:53] 2025-10-14 13:34:46,631 | INFO     | [job] retrieve thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:46,745 | INFO     | [job] job monitor thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:46,952 | INFO     | [job] control thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:47,113 | INFO     | all payload control threads have been joined
[2025-10-14 15:35:53] 2025-10-14 13:34:47,380 | INFO     | [payload] validate_post thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:47,451 | INFO     | [data] control thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:47,565 | INFO     | [job] queue monitor thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:47,612 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:47,719 | INFO     | [data] copytool_in thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:47,893 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:47,979 | INFO     | [payload] failed_post thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:47,984 | INFO     | [job] validate thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:48,092 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:48,103 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 15:35:53] 2025-10-14 13:34:48,105 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:48,119 | INFO     | [payload] control thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:48,331 | INFO     | [data] copytool_out thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:34:52,112 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 15:35:53] 2025-10-14 13:35:14,269 | INFO     | PID=9056 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-14 15:35:53] 2025-10-14 13:35:14,269 | INFO     | .. there are 9 such processes running
[2025-10-14 15:35:53] 2025-10-14 13:35:14,270 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 15:35:53] 2025-10-14 13:35:14,270 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 15:35:53] 2025-10-14 13:35:14,270 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 15:35:53] 2025-10-14 13:35:41,773 | INFO     | [monitor] cgroup control has ended
[2025-10-14 15:35:53] 2025-10-14 13:35:43,054 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139631849215808)>', '<ExcThread(monitor, started 139631190337280)>']
[2025-10-14 15:35:53] 2025-10-14 13:35:43,443 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 15:35:53] 2025-10-14 13:35:43,443 | INFO     | [monitor] control thread has ended
[2025-10-14 15:35:53] 2025-10-14 13:35:48,080 | INFO     | all workflow threads have been joined
[2025-10-14 15:35:53] 2025-10-14 13:35:48,080 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 15:35:53] 2025-10-14 13:35:48,081 | INFO     | traces error code: 0
[2025-10-14 15:35:53] 2025-10-14 13:35:48,081 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 15:35:53] 2025-10-14 13:35:48,350 [wrapper] ==== pilot stdout END ====
[2025-10-14 15:35:53] 2025-10-14 13:35:48,387 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 15:35:53] 2025-10-14 13:35:48,427 [wrapper] pilotpid: 9056
[2025-10-14 15:35:53] 2025-10-14 13:35:48,474 [wrapper] Pilot exit status: 0
[2025-10-14 15:35:53] 2025-10-14 13:35:48,842 [wrapper] pandaids: 6842091888
[2025-10-14 15:35:53] 2025-10-14 13:35:49,855 [wrapper] cleanup supervisor_pilot  5895 9057
[2025-10-14 15:35:53] 2025-10-14 13:35:49,925 [wrapper] Test setup, not cleaning
[2025-10-14 15:35:53] 2025-10-14 13:35:50,028 [wrapper] apfmon messages muted
[2025-10-14 15:35:53] 2025-10-14 13:35:50,133 [wrapper] ==== wrapper stdout END ====
[2025-10-14 15:35:53] 2025-10-14 13:35:50,231 [wrapper] ==== wrapper stderr END ====
[2025-10-14 15:35:53]  *** Error codes and diagnostics ***
[2025-10-14 15:35:53]     "exeErrorCode": 0,
[2025-10-14 15:35:53]     "exeErrorDiag": "",
[2025-10-14 15:35:53]     "pilotErrorCode": 0,
[2025-10-14 15:35:53]     "pilotErrorDiag": "",
[2025-10-14 15:35:53]  *** Listing of results directory ***
[2025-10-14 15:35:53] total 416440
[2025-10-14 15:35:53] -rw-r--r--. 1 boinc boinc    557409 Oct 13 05:15 pilot3.tar.gz
[2025-10-14 15:35:53] -rwx------. 1 boinc boinc     36292 Oct 13 05:26 runpilot2-wrapper.sh
[2025-10-14 15:35:53] -rw-r--r--. 1 boinc boinc      5112 Oct 13 05:26 queuedata.json
[2025-10-14 15:35:53] -rw-r--r--. 1 boinc boinc       100 Oct 14 11:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 15:35:53] -rwxr-xr-x. 1 boinc boinc      7986 Oct 14 11:44 run_atlas
[2025-10-14 15:35:53] -rw-r--r--. 1 boinc boinc       105 Oct 14 11:44 job.xml
[2025-10-14 15:35:53] -rw-r--r--. 1 boinc boinc      6388 Oct 14 11:44 init_data.xml
[2025-10-14 15:35:53] -rw-r--r--. 2 boinc boinc 225664141 Oct 14 11:44 EVNT.46676267._002144.pool.root.1
[2025-10-14 15:35:53] -rw-r--r--. 2 boinc boinc     15120 Oct 14 11:44 start_atlas.sh
[2025-10-14 15:35:53] drwxrwx--x. 2 boinc boinc        68 Oct 14 11:44 shared
[2025-10-14 15:35:53] -rw-r--r--. 2 boinc boinc    569682 Oct 14 11:44 input.tar.gz
[2025-10-14 15:35:53] -rw-r--r--. 1 boinc boinc         0 Oct 14 11:44 boinc_lockfile
[2025-10-14 15:35:53] -rw-r--r--. 1 boinc boinc      2550 Oct 14 11:45 pandaJob.out
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc    972837 Oct 14 11:48 agis_schedconf.cvmfs.json
[2025-10-14 15:35:53] drwx------. 5 boinc boinc      4096 Oct 14 11:48 pilot3
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc 192318754 Oct 14 15:31 HITS.46676269._095822.pool.root.1
[2025-10-14 15:35:53] -rw-r--r--. 1 boinc boinc       531 Oct 14 15:32 boinc_task_state.xml
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc      1018 Oct 14 15:32 memory_monitor_summary.json
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc   1560740 Oct 14 15:32 agis_ddmendpoints.agis.ALL.json
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc    449533 Oct 14 15:32 log.46676269._095822.job.log.tgz.1
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc      7785 Oct 14 15:34 heartbeat.json
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc        95 Oct 14 15:35 pilot_heartbeat.json
[2025-10-14 15:35:53] -rw-r--r--. 1 boinc boinc        28 Oct 14 15:35 wrapper_checkpoint.txt
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc      4884 Oct 14 15:35 pilotlog.txt
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc   1830957 Oct 14 15:35 log.46676269._095822.job.log.1
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc       357 Oct 14 15:35 output.list
[2025-10-14 15:35:53] -rw-r--r--. 1 boinc boinc       620 Oct 14 15:35 runtime_log
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc   2304000 Oct 14 15:35 result.tar.gz
[2025-10-14 15:35:53] -rw-r--r--. 1 boinc boinc      8717 Oct 14 15:35 runtime_log.err
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc       657 Oct 14 15:35 fvoLDmgNOS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2dmNDmYPHJ9n.diag
[2025-10-14 15:35:53] -rw-r--r--. 1 boinc boinc      8192 Oct 14 15:35 boinc_mmap_file
[2025-10-14 15:35:53] -rw-r--r--. 1 boinc boinc     20751 Oct 14 15:35 stderr.txt
[2025-10-14 15:35:53] HITS file was successfully produced:
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc 192318754 Oct 14 15:31 shared/HITS.pool.root.1
[2025-10-14 15:35:53]  *** Contents of shared directory: ***
[2025-10-14 15:35:53] total 411016
[2025-10-14 15:35:53] -rw-r--r--. 2 boinc boinc 225664141 Oct 14 11:44 ATLAS.root_0
[2025-10-14 15:35:53] -rw-r--r--. 2 boinc boinc     15120 Oct 14 11:44 start_atlas.sh
[2025-10-14 15:35:53] -rw-r--r--. 2 boinc boinc    569682 Oct 14 11:44 input.tar.gz
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc 192318754 Oct 14 15:31 HITS.pool.root.1
[2025-10-14 15:35:53] -rw-------. 1 boinc boinc   2304000 Oct 14 15:35 result.tar.gz
15:35:54 (5237): run_atlas exited; CPU time 48913.242635
15:35:54 (5237): called boinc_finish(0)

</stderr_txt>
]]>

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