Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:05:02 (2686514): wrapper (7.7.26015): starting
20:05:02 (2686514): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 20:05:02] Arguments: --nthreads 2
[2025-10-13 20:05:02] Threads: 2
[2025-10-13 20:05:02] Checking for CVMFS
[2025-10-13 20:05:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 20:05:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 20:05:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 20:05:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 20:05:02] 2.9.2.0 1554424 4697 60100 151668 0 57 30181833 36864001 0 130560 0 2816827 99.989 159652 792 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 20:05:02] CVMFS is ok
[2025-10-13 20:05:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 20:05:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 20:05:02] Further information can be found at the LHC@home message board.
[2025-10-13 20:05:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 20:05:02] Checking for apptainer binary...
[2025-10-13 20:05:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 20:05:02] Running /usr/bin/apptainer --version
[2025-10-13 20:05:02] apptainer version 1.4.1-1.1
[2025-10-13 20:05:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 20:05:02] thA310
[2025-10-13 20:05:02] apptainer works
[2025-10-13 20:05:02] Set ATHENA_PROC_NUMBER=2
[2025-10-13 20:05:02] Set ATHENA_CORE_NUMBER=2
[2025-10-13 20:05:02] Starting ATLAS job with PandaID=6839866025
[2025-10-13 20:05:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 22:16:38]  *** The last 200 lines of the pilot log: ***
[2025-10-13 22:16:38] 2025-10-13 20:16:08,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 22:16:38] 2025-10-13 20:16:08,147 | INFO     | collected zombie processes
[2025-10-13 22:16:38] 2025-10-13 20:16:08,147 | INFO     | will attempt to kill all subprocesses of pid=2696639
[2025-10-13 22:16:38] 2025-10-13 20:16:08,188 | INFO     | process IDs to be killed: [2696639] (in reverse order)
[2025-10-13 22:16:38] 2025-10-13 20:16:08,209 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 22:16:38] 2025-10-13 20:16:08,209 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 22:16:38] 2025-10-13 20:16:08,210 | INFO     | did not find any defunct processes belonging to 2696639
[2025-10-13 22:16:38] 2025-10-13 20:16:08,211 | INFO     | did not find any defunct processes belonging to 2696639
[2025-10-13 22:16:38] 2025-10-13 20:16:08,211 | INFO     | ready for new job
[2025-10-13 22:16:38] 2025-10-13 20:16:08,211 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 22:16:38] 2025-10-13 20:16:08,212 | INFO     | ***************************************
[2025-10-13 22:16:38] 2025-10-13 20:16:08,212 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 22:16:38] 2025-10-13 20:16:08,212 | INFO     | ***************************************
[2025-10-13 22:16:38] 2025-10-13 20:16:08,212 | INFO     | 
[2025-10-13 22:16:38] 2025-10-13 20:16:08,212 | INFO     | architecture information:
[2025-10-13 22:16:38] 2025-10-13 20:16:08,212 | INFO     | executing command: cat /etc/os-release
[2025-10-13 22:16:38] 2025-10-13 20:16:08,221 | INFO     | cat /etc/os-release:
[2025-10-13 22:16:38] NAME="CentOS Linux"
[2025-10-13 22:16:38] VERSION="7 (Core)"
[2025-10-13 22:16:38] ID="centos"
[2025-10-13 22:16:38] ID_LIKE="rhel fedora"
[2025-10-13 22:16:38] VERSION_ID="7"
[2025-10-13 22:16:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 22:16:38] ANSI_COLOR="0;31"
[2025-10-13 22:16:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 22:16:38] HOME_URL="https://www.centos.org/"
[2025-10-13 22:16:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 22:16:38] 
[2025-10-13 22:16:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 22:16:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 22:16:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 22:16:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 22:16:38] 
[2025-10-13 22:16:38] 2025-10-13 20:16:08,222 | INFO     | ***************************************
[2025-10-13 22:16:38] 2025-10-13 20:16:08,725 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 22:16:38] 2025-10-13 20:16:08,737 | INFO     | sufficient remaining disk space (494910046208 B)
[2025-10-13 22:16:38] 2025-10-13 20:16:08,738 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 22:16:38] 2025-10-13 20:16:08,738 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 22:16:38] 2025-10-13 20:16:08,738 | INFO     | update_server=False
[2025-10-13 22:16:38] 2025-10-13 20:16:08,738 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 22:16:38] 2025-10-13 20:16:08,738 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:16:38] 2025-10-13 20:16:08,738 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 22:16:38] 2025-10-13 20:16:08,738 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 22:16:38] 2025-10-13 20:16:09,011 | INFO     | all payload control threads have been joined
[2025-10-13 22:16:38] 2025-10-13 20:16:09,442 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:16:38] 2025-10-13 20:16:09,443 | INFO     | aborting loop
[2025-10-13 22:16:38] 2025-10-13 20:16:09,552 | INFO     | all job control threads have been joined
[2025-10-13 22:16:38] 2025-10-13 20:16:09,743 | INFO     | [job] queue monitor thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:09,744 | INFO     | [job] retrieve thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:09,754 | INFO     | all data control threads have been joined
[2025-10-13 22:16:38] 2025-10-13 20:16:10,017 | INFO     | [payload] control thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:10,171 | INFO     | [payload] failed_post thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:10,239 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:10,263 | INFO     | [data] copytool_in thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:10,449 | INFO     | [job] job monitor thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:10,558 | INFO     | [job] control thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:10,744 | INFO     | [data] copytool_out thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:10,760 | INFO     | [data] control thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:10,798 | INFO     | [job] validate thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:10,809 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:10,897 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:11,278 | INFO     | [payload] validate_post thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:12,745 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:19,664 | INFO     | job.realtimelogging is not enabled
[2025-10-13 22:16:38] 2025-10-13 20:16:20,670 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 22:16:38] 2025-10-13 20:16:26,823 | INFO     | [monitor] cgroup control has ended
[2025-10-13 22:16:38] 2025-10-13 20:16:26,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139643108321088)>', '<ExcThread(monitor, started 139642254907136)>']
[2025-10-13 22:16:38] 2025-10-13 20:16:32,017 | INFO     | all workflow threads have been joined
[2025-10-13 22:16:38] 2025-10-13 20:16:32,017 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 22:16:38] 2025-10-13 20:16:32,018 | INFO     | traces error code: 0
[2025-10-13 22:16:38] 2025-10-13 20:16:32,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 22:16:38] 2025-10-13 20:16:38,776 | INFO     | PID=2690227 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 22:16:38] 2025-10-13 20:16:38,776 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 22:16:38] 2025-10-13 20:16:38,776 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 22:16:38] 2025-10-13 20:16:38,776 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 22:16:38] 2025-10-13 20:16:38,776 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 22:16:38] 2025-10-13 20:16:38,776 | INFO     | [monitor] control thread has ended
[2025-10-13 22:16:38] 2025-10-13 20:16:38,817 [wrapper] ==== pilot stdout END ====
[2025-10-13 22:16:38] 2025-10-13 20:16:38,819 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 22:16:38] 2025-10-13 20:16:38,822 [wrapper] pilotpid: 2690227
[2025-10-13 22:16:38] 2025-10-13 20:16:38,824 [wrapper] Pilot exit status: 0
[2025-10-13 22:16:38] 2025-10-13 20:16:38,829 [wrapper] pandaids: 6839866025
[2025-10-13 22:16:38] 2025-10-13 20:16:38,841 [wrapper] cleanup supervisor_pilot 2711275 2690228
[2025-10-13 22:16:38] 2025-10-13 20:16:38,844 [wrapper] Test setup, not cleaning
[2025-10-13 22:16:38] 2025-10-13 20:16:38,846 [wrapper] apfmon messages muted
[2025-10-13 22:16:38] 2025-10-13 20:16:38,848 [wrapper] ==== wrapper stdout END ====
[2025-10-13 22:16:38] 2025-10-13 20:16:38,850 [wrapper] ==== wrapper stderr END ====
[2025-10-13 22:16:38]  *** Error codes and diagnostics ***
[2025-10-13 22:16:38]     "exeErrorCode": 0,
[2025-10-13 22:16:38]     "exeErrorDiag": "",
[2025-10-13 22:16:38]     "pilotErrorCode": 0,
[2025-10-13 22:16:38]     "pilotErrorDiag": "",
[2025-10-13 22:16:38]  *** Listing of results directory ***
[2025-10-13 22:16:38] total 417252
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc    557409 Oct 12 11:51 pilot3.tar.gz
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc      5112 Oct 12 12:05 queuedata.json
[2025-10-13 22:16:38] -rwx------ 1 boinc boinc     36292 Oct 12 12:07 runpilot2-wrapper.sh
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc       100 Oct 13 20:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 22:16:38] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 20:05 run_atlas
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc       105 Oct 13 20:05 job.xml
[2025-10-13 22:16:38] -rw-r--r-- 2 boinc boinc 220672513 Oct 13 20:05 EVNT.46676267._003606.pool.root.1
[2025-10-13 22:16:38] -rw-r--r-- 2 boinc boinc    569680 Oct 13 20:05 input.tar.gz
[2025-10-13 22:16:38] -rw-r--r-- 2 boinc boinc     15120 Oct 13 20:05 start_atlas.sh
[2025-10-13 22:16:38] drwxrwx--x 2 boinc boinc      4096 Oct 13 20:05 shared
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc         0 Oct 13 20:05 boinc_setup_complete
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc      6205 Oct 13 20:05 init_data.xml
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc         0 Oct 13 20:05 boinc_lockfile
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc      2550 Oct 13 20:05 pandaJob.out
[2025-10-13 22:16:38] -rw------- 1 boinc boinc    972791 Oct 13 20:05 agis_schedconf.cvmfs.json
[2025-10-13 22:16:38] -rw------- 1 boinc boinc   1560580 Oct 13 20:05 agis_ddmendpoints.agis.ALL.json
[2025-10-13 22:16:38] drwx------ 5 boinc boinc      4096 Oct 13 20:05 pilot3
[2025-10-13 22:16:38] -rw------- 1 boinc boinc 199857184 Oct 13 22:15 HITS.46676269._075760.pool.root.1
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc       529 Oct 13 22:15 boinc_task_state.xml
[2025-10-13 22:16:38] -rw------- 1 boinc boinc      1016 Oct 13 22:15 memory_monitor_summary.json
[2025-10-13 22:16:38] -rw------- 1 boinc boinc        95 Oct 13 22:15 pilot_heartbeat.json
[2025-10-13 22:16:38] -rw------- 1 boinc boinc    288997 Oct 13 22:15 log.46676269._075760.job.log.tgz.1
[2025-10-13 22:16:38] -rw------- 1 boinc boinc      7749 Oct 13 22:16 heartbeat.json
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc      8192 Oct 13 22:16 boinc_mmap_file
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc        27 Oct 13 22:16 wrapper_checkpoint.txt
[2025-10-13 22:16:38] -rw------- 1 boinc boinc       747 Oct 13 22:16 pilotlog.txt
[2025-10-13 22:16:38] -rw------- 1 boinc boinc   1130554 Oct 13 22:16 log.46676269._075760.job.log.1
[2025-10-13 22:16:38] -rw------- 1 boinc boinc       357 Oct 13 22:16 output.list
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc       620 Oct 13 22:16 runtime_log
[2025-10-13 22:16:38] -rw------- 1 boinc boinc   1443840 Oct 13 22:16 result.tar.gz
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc      8777 Oct 13 22:16 runtime_log.err
[2025-10-13 22:16:38] -rw------- 1 boinc boinc       659 Oct 13 22:16 11KMDmaA8R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiPjNDmszrHon.diag
[2025-10-13 22:16:38] -rw-r--r-- 1 boinc boinc     10508 Oct 13 22:16 stderr.txt
[2025-10-13 22:16:38] HITS file was successfully produced:
[2025-10-13 22:16:38] -rw------- 1 boinc boinc 199857184 Oct 13 22:15 shared/HITS.pool.root.1
[2025-10-13 22:16:38]  *** Contents of shared directory: ***
[2025-10-13 22:16:38] total 412676
[2025-10-13 22:16:38] -rw-r--r-- 2 boinc boinc 220672513 Oct 13 20:05 ATLAS.root_0
[2025-10-13 22:16:38] -rw-r--r-- 2 boinc boinc    569680 Oct 13 20:05 input.tar.gz
[2025-10-13 22:16:38] -rw-r--r-- 2 boinc boinc     15120 Oct 13 20:05 start_atlas.sh
[2025-10-13 22:16:38] -rw------- 1 boinc boinc 199857184 Oct 13 22:15 HITS.pool.root.1
[2025-10-13 22:16:38] -rw------- 1 boinc boinc   1443840 Oct 13 22:16 result.tar.gz
22:16:40 (2686514): run_atlas exited; CPU time 15276.948292
22:16:40 (2686514): called boinc_finish(0)

</stderr_txt>
]]>

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