Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:30:23 (4030370): wrapper (7.7.26015): starting
19:30:23 (4030370): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 19:30:23] Arguments: --nthreads 3
[2025-10-13 19:30:23] Threads: 3
[2025-10-13 19:30:23] Checking for CVMFS
[2025-10-13 19:30:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 19:30:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 19:30:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 19:30:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 19:30:23] 2.9.2.0 796922 6086 84964 151668 1 57 32914322 36864001 0 130560 0 4825547 99.991 210873 952 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 19:30:23] CVMFS is ok
[2025-10-13 19:30:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 19:30:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 19:30:23] Further information can be found at the LHC@home message board.
[2025-10-13 19:30:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 19:30:23] Checking for apptainer binary...
[2025-10-13 19:30:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 19:30:23] Running /usr/bin/apptainer --version
[2025-10-13 19:30:24] apptainer version 1.4.1-1.1
[2025-10-13 19:30:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 19:30:24] atlasA303
[2025-10-13 19:30:24] apptainer works
[2025-10-13 19:30:24] Set ATHENA_PROC_NUMBER=3
[2025-10-13 19:30:24] Set ATHENA_CORE_NUMBER=3
[2025-10-13 19:30:24] Starting ATLAS job with PandaID=6841068675
[2025-10-13 19:30:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 20:54:47]  *** The last 200 lines of the pilot log: ***
[2025-10-13 20:54:47] 2025-10-13 18:54:16,247 | INFO     | did not find any defunct processes belonging to 4040603
[2025-10-13 20:54:47] 2025-10-13 18:54:16,248 | INFO     | did not find any defunct processes belonging to 4040603
[2025-10-13 20:54:47] 2025-10-13 18:54:16,248 | INFO     | ready for new job
[2025-10-13 20:54:47] 2025-10-13 18:54:16,248 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 20:54:47] 2025-10-13 18:54:16,249 | INFO     | ***************************************
[2025-10-13 20:54:47] 2025-10-13 18:54:16,249 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 20:54:47] 2025-10-13 18:54:16,249 | INFO     | ***************************************
[2025-10-13 20:54:47] 2025-10-13 18:54:16,249 | INFO     | 
[2025-10-13 20:54:47] 2025-10-13 18:54:16,249 | INFO     | architecture information:
[2025-10-13 20:54:47] 2025-10-13 18:54:16,249 | INFO     | executing command: cat /etc/os-release
[2025-10-13 20:54:47] 2025-10-13 18:54:16,258 | INFO     | cat /etc/os-release:
[2025-10-13 20:54:47] NAME="CentOS Linux"
[2025-10-13 20:54:47] VERSION="7 (Core)"
[2025-10-13 20:54:47] ID="centos"
[2025-10-13 20:54:47] ID_LIKE="rhel fedora"
[2025-10-13 20:54:47] VERSION_ID="7"
[2025-10-13 20:54:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 20:54:47] ANSI_COLOR="0;31"
[2025-10-13 20:54:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 20:54:47] HOME_URL="https://www.centos.org/"
[2025-10-13 20:54:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 20:54:47] 
[2025-10-13 20:54:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 20:54:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 20:54:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 20:54:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 20:54:47] 
[2025-10-13 20:54:47] 2025-10-13 18:54:16,259 | INFO     | ***************************************
[2025-10-13 20:54:47] 2025-10-13 18:54:16,762 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 20:54:47] 2025-10-13 18:54:16,776 | INFO     | sufficient remaining disk space (373217558528 B)
[2025-10-13 20:54:47] 2025-10-13 18:54:16,776 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 20:54:47] 2025-10-13 18:54:16,776 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 20:54:47] 2025-10-13 18:54:16,776 | INFO     | update_server=False
[2025-10-13 20:54:47] 2025-10-13 18:54:16,776 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 20:54:47] 2025-10-13 18:54:16,776 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:54:47] 2025-10-13 18:54:17,103 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 20:54:47] 2025-10-13 18:54:17,103 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 20:54:47] 2025-10-13 18:54:17,104 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:54:47] 2025-10-13 18:54:17,104 | INFO     | will abort loop
[2025-10-13 20:54:47] 2025-10-13 18:54:17,287 | INFO     | all data control threads have been joined
[2025-10-13 20:54:47] 2025-10-13 18:54:17,453 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 20:54:47] 2025-10-13 18:54:17,697 | INFO     | all payload control threads have been joined
[2025-10-13 20:54:47] 2025-10-13 18:54:17,782 | INFO     | [job] retrieve thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:17,782 | INFO     | [job] queue monitor thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:18,109 | INFO     | [job] job monitor thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:18,115 | INFO     | [payload] failed_post thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:18,292 | INFO     | [data] control thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:18,301 | INFO     | all job control threads have been joined
[2025-10-13 20:54:47] 2025-10-13 18:54:18,461 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:18,689 | INFO     | [data] copytool_in thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:18,703 | INFO     | [payload] control thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:19,012 | INFO     | [job] validate thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:19,039 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 20:54:47] 2025-10-13 18:54:19,094 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:19,125 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:19,289 | INFO     | [payload] validate_post thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:19,307 | INFO     | [job] control thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:19,460 | INFO     | [data] copytool_out thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:23,047 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:27,076 | INFO     | job.realtimelogging is not enabled
[2025-10-13 20:54:47] 2025-10-13 18:54:28,082 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 20:54:47] 2025-10-13 18:54:35,612 | INFO     | [monitor] cgroup control has ended
[2025-10-13 20:54:47] 2025-10-13 18:54:37,087 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140199507679040)>', '<ExcThread(monitor, started 140199227000576)>']
[2025-10-13 20:54:47] 2025-10-13 18:54:42,113 | INFO     | all workflow threads have been joined
[2025-10-13 20:54:47] 2025-10-13 18:54:42,113 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 20:54:47] 2025-10-13 18:54:42,113 | INFO     | traces error code: 0
[2025-10-13 20:54:47] 2025-10-13 18:54:42,114 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 20:54:47] 2025-10-13 18:54:46,988 | INFO     | PID=4034105 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 20:54:47] 2025-10-13 18:54:46,988 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 20:54:47] 2025-10-13 18:54:46,988 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 20:54:47] 2025-10-13 18:54:46,988 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 20:54:47] 2025-10-13 18:54:46,988 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 20:54:47] 2025-10-13 18:54:46,988 | INFO     | [monitor] control thread has ended
[2025-10-13 20:54:47] 2025-10-13 18:54:47,035 [wrapper] ==== pilot stdout END ====
[2025-10-13 20:54:47] 2025-10-13 18:54:47,038 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 20:54:47] 2025-10-13 18:54:47,041 [wrapper] pilotpid: 4034105
[2025-10-13 20:54:47] 2025-10-13 18:54:47,043 [wrapper] Pilot exit status: 0
[2025-10-13 20:54:47] 2025-10-13 18:54:47,051 [wrapper] pandaids: 6841068675
[2025-10-13 20:54:47] 2025-10-13 18:54:47,068 [wrapper] cleanup supervisor_pilot 4070106 4034106
[2025-10-13 20:54:47] 2025-10-13 18:54:47,071 [wrapper] Test setup, not cleaning
[2025-10-13 20:54:47] 2025-10-13 18:54:47,073 [wrapper] apfmon messages muted
[2025-10-13 20:54:47] 2025-10-13 18:54:47,076 [wrapper] ==== wrapper stdout END ====
[2025-10-13 20:54:47] 2025-10-13 18:54:47,078 [wrapper] ==== wrapper stderr END ====
[2025-10-13 20:54:47]  *** Error codes and diagnostics ***
[2025-10-13 20:54:47]     "exeErrorCode": 0,
[2025-10-13 20:54:47]     "exeErrorDiag": "",
[2025-10-13 20:54:47]     "pilotErrorCode": 0,
[2025-10-13 20:54:47]     "pilotErrorDiag": "",
[2025-10-13 20:54:47]  *** Listing of results directory ***
[2025-10-13 20:54:47] total 407860
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc    557409 Oct 13 02:11 pilot3.tar.gz
[2025-10-13 20:54:47] -rwx------ 1 boinc boinc     36292 Oct 13 02:15 runpilot2-wrapper.sh
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc      5112 Oct 13 02:15 queuedata.json
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc       100 Oct 13 19:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 20:54:47] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 19:30 run_atlas
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc       105 Oct 13 19:30 job.xml
[2025-10-13 20:54:47] -rw-r--r-- 2 boinc boinc 219609713 Oct 13 19:30 EVNT.46676267._004683.pool.root.1
[2025-10-13 20:54:47] -rw-r--r-- 2 boinc boinc    569675 Oct 13 19:30 input.tar.gz
[2025-10-13 20:54:47] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:30 start_atlas.sh
[2025-10-13 20:54:47] drwxrwx--x 2 boinc boinc      4096 Oct 13 19:30 shared
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc         0 Oct 13 19:30 boinc_setup_complete
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc      6450 Oct 13 19:30 init_data.xml
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc         0 Oct 13 19:30 boinc_lockfile
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc      2550 Oct 13 19:30 pandaJob.out
[2025-10-13 20:54:47] -rw------- 1 boinc boinc    972791 Oct 13 19:30 agis_schedconf.cvmfs.json
[2025-10-13 20:54:47] -rw------- 1 boinc boinc   1560580 Oct 13 19:30 agis_ddmendpoints.agis.ALL.json
[2025-10-13 20:54:47] drwx------ 5 boinc boinc      4096 Oct 13 19:30 pilot3
[2025-10-13 20:54:47] -rw------- 1 boinc boinc 192165887 Oct 13 20:53 HITS.46676269._092911.pool.root.1
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc       529 Oct 13 20:53 boinc_task_state.xml
[2025-10-13 20:54:47] -rw------- 1 boinc boinc        95 Oct 13 20:53 pilot_heartbeat.json
[2025-10-13 20:54:47] -rw------- 1 boinc boinc      1016 Oct 13 20:54 memory_monitor_summary.json
[2025-10-13 20:54:47] -rw------- 1 boinc boinc    252631 Oct 13 20:54 log.46676269._092911.job.log.tgz.1
[2025-10-13 20:54:47] -rw------- 1 boinc boinc      7757 Oct 13 20:54 heartbeat.json
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc        27 Oct 13 20:54 wrapper_checkpoint.txt
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc      8192 Oct 13 20:54 boinc_mmap_file
[2025-10-13 20:54:47] -rw------- 1 boinc boinc       747 Oct 13 20:54 pilotlog.txt
[2025-10-13 20:54:47] -rw------- 1 boinc boinc    737608 Oct 13 20:54 log.46676269._092911.job.log.1
[2025-10-13 20:54:47] -rw------- 1 boinc boinc       357 Oct 13 20:54 output.list
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc       620 Oct 13 20:54 runtime_log
[2025-10-13 20:54:47] -rw------- 1 boinc boinc   1013760 Oct 13 20:54 result.tar.gz
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc      8792 Oct 13 20:54 runtime_log.err
[2025-10-13 20:54:47] -rw------- 1 boinc boinc       661 Oct 13 20:54 hBhNDmeOLS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiAmNDmOmkIFn.diag
[2025-10-13 20:54:47] -rw-r--r-- 1 boinc boinc     10081 Oct 13 20:54 stderr.txt
[2025-10-13 20:54:47] HITS file was successfully produced:
[2025-10-13 20:54:47] -rw------- 1 boinc boinc 192165887 Oct 13 20:53 shared/HITS.pool.root.1
[2025-10-13 20:54:47]  *** Contents of shared directory: ***
[2025-10-13 20:54:47] total 403704
[2025-10-13 20:54:47] -rw-r--r-- 2 boinc boinc 219609713 Oct 13 19:30 ATLAS.root_0
[2025-10-13 20:54:47] -rw-r--r-- 2 boinc boinc    569675 Oct 13 19:30 input.tar.gz
[2025-10-13 20:54:47] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:30 start_atlas.sh
[2025-10-13 20:54:47] -rw------- 1 boinc boinc 192165887 Oct 13 20:53 HITS.pool.root.1
[2025-10-13 20:54:47] -rw------- 1 boinc boinc   1013760 Oct 13 20:54 result.tar.gz
20:54:48 (4030370): run_atlas exited; CPU time 14362.503799
20:54:48 (4030370): called boinc_finish(0)

</stderr_txt>
]]>

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