Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:20:37 (13154): wrapper (7.7.26015): starting
04:20:37 (13154): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 04:20:37] Arguments: --nthreads 12
[2025-10-13 04:20:37] Threads: 12
[2025-10-13 04:20:37] Checking for CVMFS
[2025-10-13 04:20:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:20:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:20:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:20:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:20:38] 2.11.2.0 3103 14049 89328 151654 0 56 11790853 20275201 1 130560 0 14695568 99.993 470063 46389 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 04:20:38] CVMFS is ok
[2025-10-13 04:20:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:20:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:20:38] Further information can be found at the LHC@home message board.
[2025-10-13 04:20:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:20:38] Checking for apptainer binary...
[2025-10-13 04:20:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:20:38] Running /usr/bin/apptainer --version
[2025-10-13 04:20:38] apptainer version 1.3.2-1.el7
[2025-10-13 04:20:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:20:39] c-115-41.aglt2.org
[2025-10-13 04:20:39] apptainer works
[2025-10-13 04:20:39] Set ATHENA_PROC_NUMBER=12
[2025-10-13 04:20:39] Set ATHENA_CORE_NUMBER=12
[2025-10-13 04:20:39] Starting ATLAS job with PandaID=6842251048
[2025-10-13 04:20:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:28:28]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:28:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 05:28:28]  replicas=None
[2025-10-13 05:28:28]  scope=mc23_13p6TeV
[2025-10-13 05:28:28]  status=None
[2025-10-13 05:28:28]  status_code=0
[2025-10-13 05:28:28]  storage_token=
[2025-10-13 05:28:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6842251048/log.46676269._095987.job.log.tgz.1
[2025-10-13 05:28:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/e7/log.46676269._095987.job.log.tgz.1
[2025-10-13 05:28:28]  workdir=None
[2025-10-13 05:28:28] ]
[2025-10-13 05:28:28] 2025-10-13 09:27:48,961 | INFO     | transferring file log.46676269._095987.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6842251048/log.46676269._095987.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 05:28:28] 2025-10-13 09:27:48,961 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6842251048/log.46676269._095987.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._095987.job
[2025-10-13 05:28:28] 2025-10-13 09:27:48,983 | INFO     | adding to output.list: log.46676269._095987.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/e7/log.46676269._095987.job.log.tg
[2025-10-13 05:28:28] 2025-10-13 09:27:48,984 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:28:28] 2025-10-13 09:27:48,984 | INFO     | summary of transferred files:
[2025-10-13 05:28:28] 2025-10-13 09:27:48,984 | INFO     |  -- lfn=log.46676269._095987.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:28:28] 2025-10-13 09:27:48,985 | INFO     | stage-out finished correctly
[2025-10-13 05:28:28] 2025-10-13 09:27:49,065 | INFO     | number of running child processes to parent process 23321: 1
[2025-10-13 05:28:28] 2025-10-13 09:27:49,066 | INFO     | maximum number of monitored processes: 6
[2025-10-13 05:28:28] 2025-10-13 09:27:49,291 | INFO     | time since job start (4015s) is within the limit (172800.0s)
[2025-10-13 05:28:28] 2025-10-13 09:27:50,011 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:28:28] 2025-10-13 09:27:51,296 | INFO     | time since job start (4017s) is within the limit (172800.0s)
[2025-10-13 05:28:28] 2025-10-13 09:27:51,493 | INFO     | job 6842251048 has state=finished
[2025-10-13 05:28:28] 2025-10-13 09:27:51,493 | INFO     | preparing for final server update for job 6842251048 in state='finished'
[2025-10-13 05:28:28] 2025-10-13 09:27:51,493 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:28:28] 2025-10-13 09:27:51,493 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:28:28] 2025-10-13 09:27:51,494 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:28:28] 2025-10-13 09:27:51,494 | INFO     | job 6842251048 has finished - writing final server update
[2025-10-13 05:28:28] 2025-10-13 09:27:51,494 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:28:28] 2025-10-13 09:27:51,495 | INFO     | executing command: lscpu
[2025-10-13 05:28:28] 2025-10-13 09:27:51,521 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:28:28] 2025-10-13 09:27:51,572 | INFO     | monitor loop #300: job 0:6842251048 is in state 'finished'
[2025-10-13 05:28:28] 2025-10-13 09:27:51,572 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:28:28] 2025-10-13 09:27:53,301 | INFO     | time since job start (4019s) is within the limit (172800.0s)
[2025-10-13 05:28:28] 2025-10-13 09:27:54,075 | INFO     | monitor loop #301: job 0:6842251048 is in state 'finished'
[2025-10-13 05:28:28] 2025-10-13 09:27:54,075 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:28:28] 2025-10-13 09:27:55,306 | INFO     | time since job start (4021s) is within the limit (172800.0s)
[2025-10-13 05:28:28] 2025-10-13 09:27:56,120 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 05:28:28] 2025-10-13 09:27:56,124 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-10-13 05:28:28] 2025-10-13 09:27:56,127 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6842251048/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:28:28] 2025-10-13 09:27:56,128 | INFO     | extracted standard info from prmon json
[2025-10-13 05:28:28] 2025-10-13 09:27:56,128 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:28:28] 2025-10-13 09:27:56,128 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:28:28] 2025-10-13 09:27:56,128 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:28:28] 2025-10-13 09:27:56,129 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:28:28] 2025-10-13 09:27:56,130 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:28:28] 2025-10-13 09:27:56,130 | INFO     | sum of square deviations: 63666310.0
[2025-10-13 05:28:28] 2025-10-13 09:27:56,130 | INFO     | sum of deviations: -2075930771.9999998
[2025-10-13 05:28:28] 2025-10-13 09:27:56,131 | INFO     | mean x: 1760345756.0
[2025-10-13 05:28:28] 2025-10-13 09:27:56,131 | INFO     | mean y: 2932838.7627118644
[2025-10-13 05:28:28] 2025-10-13 09:27:56,131 | INFO     | -- intersect: 57401514981.18628
[2025-10-13 05:28:28] 2025-10-13 09:27:56,131 | INFO     | intersect: 57401514981.18628
[2025-10-13 05:28:28] 2025-10-13 09:27:56,131 | INFO     | chi2: 0.09012997791017058
[2025-10-13 05:28:28] 2025-10-13 09:27:56,131 | INFO     | -- intersect: 57401514981.18628
[2025-10-13 05:28:28] 2025-10-13 09:27:56,131 | INFO     | current memory leak: -32.61 B/s (using 59 data points, chi2=0.09)
[2025-10-13 05:28:28] 2025-10-13 09:27:56,132 | INFO     | could have reported an average CPU frequency of 2148 MHz (6 samples)
[2025-10-13 05:28:28] 2025-10-13 09:27:56,132 | INFO     | ..............................
[2025-10-13 05:28:28] 2025-10-13 09:27:56,132 | INFO     | . Timing measurements:
[2025-10-13 05:28:28] 2025-10-13 09:27:56,132 | INFO     | . get job = 0 s
[2025-10-13 05:28:28] 2025-10-13 09:27:56,132 | INFO     | . initial setup = 2 s
[2025-10-13 05:28:28] 2025-10-13 09:27:56,132 | INFO     | . payload setup = 6 s
[2025-10-13 05:28:28] 2025-10-13 09:27:56,132 | INFO     | . stage-in = 0 s
[2025-10-13 05:28:28] 2025-10-13 09:27:56,132 | INFO     | . payload execution = 3987 s
[2025-10-13 05:28:28] 2025-10-13 09:27:56,132 | INFO     | . stage-out = 0 s
[2025-10-13 05:28:28] 2025-10-13 09:27:56,132 | INFO     | . log creation = 0 s
[2025-10-13 05:28:28] 2025-10-13 09:27:56,133 | INFO     | ..............................
[2025-10-13 05:28:28] 2025-10-13 09:27:56,208 | INFO     | 
[2025-10-13 05:28:28] 2025-10-13 09:27:56,208 | INFO     | job summary report
[2025-10-13 05:28:28] 2025-10-13 09:27:56,208 | INFO     | --------------------------------------------------
[2025-10-13 05:28:28] 2025-10-13 09:27:56,208 | INFO     | PanDA job id: 6842251048
[2025-10-13 05:28:28] 2025-10-13 09:27:56,208 | INFO     | task id: 46676269
[2025-10-13 05:28:28] 2025-10-13 09:27:56,208 | INFO     | errors: (none)
[2025-10-13 05:28:28] 2025-10-13 09:27:56,208 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:28:28] 2025-10-13 09:27:56,208 | INFO     | pilot state: finished 
[2025-10-13 05:28:28] 2025-10-13 09:27:56,208 | INFO     | transexitcode: 0
[2025-10-13 05:28:28] 2025-10-13 09:27:56,209 | INFO     | exeerrorcode: 0
[2025-10-13 05:28:28] 2025-10-13 09:27:56,209 | INFO     | exeerrordiag: 
[2025-10-13 05:28:28] 2025-10-13 09:27:56,209 | INFO     | exitcode: 0
[2025-10-13 05:28:28] 2025-10-13 09:27:56,209 | INFO     | exitmsg: OK
[2025-10-13 05:28:28] 2025-10-13 09:27:56,209 | INFO     | cpuconsumptiontime: 42822 s
[2025-10-13 05:28:28] 2025-10-13 09:27:56,209 | INFO     | nevents: 400
[2025-10-13 05:28:28] 2025-10-13 09:27:56,209 | INFO     | neventsw: 0
[2025-10-13 05:28:28] 2025-10-13 09:27:56,209 | INFO     | pid: 23321
[2025-10-13 05:28:28] 2025-10-13 09:27:56,209 | INFO     | pgrp: 23321
[2025-10-13 05:28:28] 2025-10-13 09:27:56,209 | INFO     | corecount: 12
[2025-10-13 05:28:28] 2025-10-13 09:27:56,209 | INFO     | event service: False
[2025-10-13 05:28:28] 2025-10-13 09:27:56,210 | INFO     | sizes: {0: 2348801, 5: 2349063, 11: 2349119, 3998: 2374929, 3999: 2383927, 4000: 2383983, 4007: 2384305}
[2025-10-13 05:28:28] 2025-10-13 09:27:56,210 | INFO     | --------------------------------------------------
[2025-10-13 05:28:28] 2025-10-13 09:27:56,210 | INFO     | 
[2025-10-13 05:28:28] 2025-10-13 09:27:56,210 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 05:28:28] 2025-10-13 09:27:56,232 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,232 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,233 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,233 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,233 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,233 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,233 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,233 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,234 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,234 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,234 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,234 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,234 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,234 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,235 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,235 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,235 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,235 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:28:28] 2025-10-13 09:27:56,235 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,235 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:28:28] 2025-10-13 09:27:56,236 | INFO     | job 6842251048 has completed (purged errors)
[2025-10-13 05:28:28] 2025-10-13 09:27:56,236 | INFO     | overall cleanup function is called
[2025-10-13 05:28:28] 2025-10-13 09:27:57,244 | INFO     | --- collectZombieJob: --- 10, [23321]
[2025-10-13 05:28:28] 2025-10-13 09:27:57,244 | INFO     | zombie collector waiting for pid 23321
[2025-10-13 05:28:28] 2025-10-13 09:27:57,244 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:28:28] 2025-10-13 09:27:57,244 | INFO     | collected zombie processes
[2025-10-13 05:28:28] 2025-10-13 09:27:57,245 | INFO     | will attempt to kill all subprocesses of pid=23321
[2025-10-13 05:28:28] 2025-10-13 09:27:57,330 | INFO     | process IDs to be killed: [23321] (in reverse order)
[2025-10-13 05:28:28] 2025-10-13 09:27:57,380 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:28:28] 2025-10-13 09:27:57,380 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:28:28] 2025-10-13 09:27:57,384 | INFO     | did not find any defunct processes belonging to 23321
[2025-10-13 05:28:28] 2025-10-13 09:27:57,388 | INFO     | did not find any defunct processes belonging to 23321
[2025-10-13 05:28:28] 2025-10-13 09:27:57,388 | INFO     | ready for new job
[2025-10-13 05:28:28] 2025-10-13 09:27:57,388 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:28:28] 2025-10-13 09:27:57,390 | INFO     | ***************************************
[2025-10-13 05:28:28] 2025-10-13 09:27:57,390 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:28:28] 2025-10-13 09:27:57,390 | INFO     | ***************************************
[2025-10-13 05:28:28] 2025-10-13 09:27:57,390 | INFO     | 
[2025-10-13 05:28:28] 2025-10-13 09:27:57,390 | INFO     | architecture information:
[2025-10-13 05:28:28] 2025-10-13 09:27:57,391 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:28:28] 2025-10-13 09:27:57,408 | INFO     | cat /etc/os-release:
[2025-10-13 05:28:28] NAME="CentOS Linux"
[2025-10-13 05:28:28] VERSION="7 (Core)"
[2025-10-13 05:28:28] ID="centos"
[2025-10-13 05:28:28] ID_LIKE="rhel fedora"
[2025-10-13 05:28:28] VERSION_ID="7"
[2025-10-13 05:28:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:28:28] ANSI_COLOR="0;31"
[2025-10-13 05:28:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:28:28] HOME_URL="https://www.centos.org/"
[2025-10-13 05:28:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:28:28] 
[2025-10-13 05:28:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:28:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:28:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:28:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:28:28] 
[2025-10-13 05:28:28] 2025-10-13 09:27:57,408 | INFO     | ***************************************
[2025-10-13 05:28:28] 2025-10-13 09:27:57,911 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 05:28:28] 2025-10-13 09:27:57,930 | INFO     | sufficient remaining disk space (18583912448 B)
[2025-10-13 05:28:28] 2025-10-13 09:27:57,931 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:28:28] 2025-10-13 09:27:57,931 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:28:28] 2025-10-13 09:27:57,931 | INFO     | update_server=False
[2025-10-13 05:28:28] 2025-10-13 09:27:57,931 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:28:28] 2025-10-13 09:27:57,932 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:28:28] 2025-10-13 09:27:57,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:28:28] 2025-10-13 09:27:57,932 | INFO     | aborting loop
[2025-10-13 05:28:28] 2025-10-13 09:27:57,933 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:28:28] 2025-10-13 09:27:58,892 | INFO     | all payload control threads have been joined
[2025-10-13 05:28:28] 2025-10-13 09:27:58,937 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:27:58,938 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:27:58,938 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:27:58,939 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:27:58,996 | INFO     | all data control threads have been joined
[2025-10-13 05:28:28] 2025-10-13 09:27:59,003 | INFO     | all job control threads have been joined
[2025-10-13 05:28:28] 2025-10-13 09:27:59,200 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:27:59,357 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:27:59,571 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:27:59,897 | INFO     | [payload] control thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:27:59,921 | INFO     | [job] validate thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:27:59,938 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:27:59,977 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:28:00,001 | INFO     | [data] control thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:28:00,007 | INFO     | [job] control thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:28:00,089 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:28:00,149 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:28:00,236 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:28:28] 2025-10-13 09:28:00,594 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:28:28] 2025-10-13 09:28:04,600 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:28:28] 2025-10-13 09:28:06,016 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140559863670592)>', '<ExcThread(monitor, started 140558894880512)>']
[2025-10-13 05:28:28] 2025-10-13 09:28:11,042 | INFO     | all workflow threads have been joined
[2025-10-13 05:28:28] 2025-10-13 09:28:11,042 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:28:28] 2025-10-13 09:28:11,042 | INFO     | traces error code: 0
[2025-10-13 05:28:28] 2025-10-13 09:28:11,043 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:28:28] 2025-10-13 09:28:28,506 | INFO     | PID=16846 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 05:28:28] 2025-10-13 09:28:28,506 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:28:28] 2025-10-13 09:28:28,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:28:28] 2025-10-13 09:28:28,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:28:28] 2025-10-13 09:28:28,507 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:28:28] 2025-10-13 09:28:28,507 | INFO     | [monitor] control thread has ended
[2025-10-13 05:28:28] 2025-10-13 09:28:28,595 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:28:28] 2025-10-13 09:28:28,599 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:28:28] 2025-10-13 09:28:28,603 [wrapper] pilotpid: 16846
[2025-10-13 05:28:28] 2025-10-13 09:28:28,607 [wrapper] Pilot exit status: 0
[2025-10-13 05:28:28] 2025-10-13 09:28:28,621 [wrapper] pandaids: 6842251048
[2025-10-13 05:28:28] 2025-10-13 09:28:28,658 [wrapper] cleanup supervisor_pilot 20172 16847
[2025-10-13 05:28:28] 2025-10-13 09:28:28,662 [wrapper] Test setup, not cleaning
[2025-10-13 05:28:28] 2025-10-13 09:28:28,666 [wrapper] apfmon messages muted
[2025-10-13 05:28:28] 2025-10-13 09:28:28,670 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:28:28] 2025-10-13 09:28:28,674 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:28:28]  *** Error codes and diagnostics ***
[2025-10-13 05:28:28]     "exeErrorCode": 0,
[2025-10-13 05:28:28]     "exeErrorDiag": "",
[2025-10-13 05:28:28]     "pilotErrorCode": 0,
[2025-10-13 05:28:28]     "pilotErrorDiag": "",
[2025-10-13 05:28:28]  *** Listing of results directory ***
[2025-10-13 05:28:28] total 415228
[2025-10-13 05:28:28] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 23:15 pilot3.tar.gz
[2025-10-13 05:28:28] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 23:35 queuedata.json
[2025-10-13 05:28:28] -rwx------ 1 boincer umatlas     36292 Oct 12 23:35 runpilot2-wrapper.sh
[2025-10-13 05:28:28] -rw-r--r-- 1 boincer umatlas       100 Oct 13 04:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:28:28] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 04:20 run_atlas
[2025-10-13 05:28:28] -rw-r--r-- 1 boincer umatlas       105 Oct 13 04:20 job.xml
[2025-10-13 05:28:28] -rw-r--r-- 2 boincer umatlas 219463065 Oct 13 04:20 EVNT.46676267._004186.pool.root.1
[2025-10-13 05:28:28] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 04:20 start_atlas.sh
[2025-10-13 05:28:28] drwxrwx--x 2 boincer umatlas      4096 Oct 13 04:20 shared
[2025-10-13 05:28:28] -rw-r--r-- 2 boincer umatlas    569688 Oct 13 04:20 input.tar.gz
[2025-10-13 05:28:28] -rw-r--r-- 1 boincer umatlas         0 Oct 13 04:20 boinc_lockfile
[2025-10-13 05:28:28] -rw-r--r-- 1 boincer umatlas      2547 Oct 13 04:20 pandaJob.out
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas    972857 Oct 13 04:20 agis_schedconf.cvmfs.json
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas   1560580 Oct 13 04:20 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:28:28] drwx------ 5 boincer umatlas      4096 Oct 13 04:20 pilot3
[2025-10-13 05:28:28] -rw-r--r-- 1 boincer umatlas      5954 Oct 13 05:20 init_data.xml
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas 199925870 Oct 13 05:27 HITS.46676269._095987.pool.root.1
[2025-10-13 05:28:28] -rw-r--r-- 1 boincer umatlas       529 Oct 13 05:27 boinc_task_state.xml
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas        95 Oct 13 05:27 pilot_heartbeat.json
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas      1063 Oct 13 05:27 memory_monitor_summary.json
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas    363485 Oct 13 05:27 log.46676269._095987.job.log.tgz.1
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas      7844 Oct 13 05:27 heartbeat.json
[2025-10-13 05:28:28] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 05:28 boinc_mmap_file
[2025-10-13 05:28:28] -rw-r--r-- 1 boincer umatlas        27 Oct 13 05:28 wrapper_checkpoint.txt
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas       745 Oct 13 05:28 pilotlog.txt
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas    589927 Oct 13 05:28 log.46676269._095987.job.log.1
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas       357 Oct 13 05:28 output.list
[2025-10-13 05:28:28] -rw-r--r-- 1 boincer umatlas       620 Oct 13 05:28 runtime_log
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas    972800 Oct 13 05:28 result.tar.gz
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas       659 Oct 13 05:28 z5nMDmdWOS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmoemNDmcePYem.diag
[2025-10-13 05:28:28] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 05:28 runtime_log.err
[2025-10-13 05:28:28] -rw-r--r-- 1 boincer umatlas     21836 Oct 13 05:28 stderr.txt
[2025-10-13 05:28:28] HITS file was successfully produced:
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas 199925870 Oct 13 05:27 shared/HITS.pool.root.1
[2025-10-13 05:28:28]  *** Contents of shared directory: ***
[2025-10-13 05:28:28] total 411096
[2025-10-13 05:28:28] -rw-r--r-- 2 boincer umatlas 219463065 Oct 13 04:20 ATLAS.root_0
[2025-10-13 05:28:28] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 04:20 start_atlas.sh
[2025-10-13 05:28:28] -rw-r--r-- 2 boincer umatlas    569688 Oct 13 04:20 input.tar.gz
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas 199925870 Oct 13 05:27 HITS.pool.root.1
[2025-10-13 05:28:28] -rw------- 1 boincer umatlas    972800 Oct 13 05:28 result.tar.gz
05:28:29 (13154): run_atlas exited; CPU time 42812.990697
05:28:29 (13154): called boinc_finish(0)

</stderr_txt>
]]>

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