Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:12:00 (3455751): wrapper (7.7.26015): starting
00:12:00 (3455751): wrapper: running run_atlas (--nthreads 3)
[2025-10-14 00:12:00] Arguments: --nthreads 3
[2025-10-14 00:12:00] Threads: 3
[2025-10-14 00:12:00] Checking for CVMFS
[2025-10-14 00:12:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 00:12:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 00:12:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 00:12:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 00:12:00] 2.9.2.0 185998 10698 90544 151675 3 56 5249307 36864000 12 130560 0 8628218 99.991 365963 870 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-14 00:12:00] CVMFS is ok
[2025-10-14 00:12:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 00:12:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-14 00:12:00] Further information can be found at the LHC@home message board.
[2025-10-14 00:12:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 00:12:00] Checking for apptainer binary...
[2025-10-14 00:12:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 00:12:00] Running /usr/bin/apptainer --version
[2025-10-14 00:12:00] apptainer version 1.4.1-1.1
[2025-10-14 00:12:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 00:12:00] thA387a
[2025-10-14 00:12:00] apptainer works
[2025-10-14 00:12:00] Set ATHENA_PROC_NUMBER=3
[2025-10-14 00:12:00] Set ATHENA_CORE_NUMBER=3
[2025-10-14 00:12:00] Starting ATLAS job with PandaID=6841068825
[2025-10-14 00:12:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 01:32:16]  *** The last 200 lines of the pilot log: ***
[2025-10-14 01:32:16] 2025-10-13 23:31:44,230 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 01:32:16] 2025-10-13 23:31:44,230 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 01:32:16] 2025-10-13 23:31:44,230 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 01:32:16] 2025-10-13 23:31:44,230 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 01:32:16] 2025-10-13 23:31:44,230 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 01:32:16] 2025-10-13 23:31:44,230 | INFO     | job 6841068825 has completed (purged errors)
[2025-10-14 01:32:16] 2025-10-13 23:31:44,230 | INFO     | overall cleanup function is called
[2025-10-14 01:32:16] 2025-10-13 23:31:45,237 | INFO     | --- collectZombieJob: --- 10, [3465901]
[2025-10-14 01:32:16] 2025-10-13 23:31:45,237 | INFO     | zombie collector waiting for pid 3465901
[2025-10-14 01:32:16] 2025-10-13 23:31:45,237 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 01:32:16] 2025-10-13 23:31:45,237 | INFO     | collected zombie processes
[2025-10-14 01:32:16] 2025-10-13 23:31:45,237 | INFO     | will attempt to kill all subprocesses of pid=3465901
[2025-10-14 01:32:16] 2025-10-13 23:31:45,280 | INFO     | process IDs to be killed: [3465901] (in reverse order)
[2025-10-14 01:32:16] 2025-10-13 23:31:45,304 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 01:32:16] 2025-10-13 23:31:45,304 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 01:32:16] 2025-10-13 23:31:45,305 | INFO     | did not find any defunct processes belonging to 3465901
[2025-10-14 01:32:16] 2025-10-13 23:31:45,306 | INFO     | did not find any defunct processes belonging to 3465901
[2025-10-14 01:32:16] 2025-10-13 23:31:45,306 | INFO     | ready for new job
[2025-10-14 01:32:16] 2025-10-13 23:31:45,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 01:32:16] 2025-10-13 23:31:45,307 | INFO     | ***************************************
[2025-10-14 01:32:16] 2025-10-13 23:31:45,307 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 01:32:16] 2025-10-13 23:31:45,307 | INFO     | ***************************************
[2025-10-14 01:32:16] 2025-10-13 23:31:45,307 | INFO     | 
[2025-10-14 01:32:16] 2025-10-13 23:31:45,307 | INFO     | architecture information:
[2025-10-14 01:32:16] 2025-10-13 23:31:45,307 | INFO     | executing command: cat /etc/os-release
[2025-10-14 01:32:16] 2025-10-13 23:31:45,315 | INFO     | cat /etc/os-release:
[2025-10-14 01:32:16] NAME="CentOS Linux"
[2025-10-14 01:32:16] VERSION="7 (Core)"
[2025-10-14 01:32:16] ID="centos"
[2025-10-14 01:32:16] ID_LIKE="rhel fedora"
[2025-10-14 01:32:16] VERSION_ID="7"
[2025-10-14 01:32:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 01:32:16] ANSI_COLOR="0;31"
[2025-10-14 01:32:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 01:32:16] HOME_URL="https://www.centos.org/"
[2025-10-14 01:32:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 01:32:16] 
[2025-10-14 01:32:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 01:32:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 01:32:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 01:32:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 01:32:16] 
[2025-10-14 01:32:16] 2025-10-13 23:31:45,316 | INFO     | ***************************************
[2025-10-14 01:32:16] 2025-10-13 23:31:45,819 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-14 01:32:16] 2025-10-13 23:31:45,831 | INFO     | sufficient remaining disk space (256424017920 B)
[2025-10-14 01:32:16] 2025-10-13 23:31:45,831 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 01:32:16] 2025-10-13 23:31:45,832 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 01:32:16] 2025-10-13 23:31:45,832 | INFO     | update_server=False
[2025-10-14 01:32:16] 2025-10-13 23:31:45,832 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 01:32:16] 2025-10-13 23:31:45,832 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 01:32:16] 2025-10-13 23:31:45,832 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 01:32:16] 2025-10-13 23:31:45,832 | INFO     | aborting loop
[2025-10-14 01:32:16] 2025-10-13 23:31:45,926 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 01:32:16] 2025-10-13 23:31:46,608 | INFO     | all payload control threads have been joined
[2025-10-14 01:32:16] 2025-10-13 23:31:46,669 | INFO     | all job control threads have been joined
[2025-10-14 01:32:16] 2025-10-13 23:31:46,836 | INFO     | [job] queue monitor thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:46,836 | INFO     | [job] retrieve thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:46,837 | INFO     | [job] job monitor thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:46,855 | INFO     | all data control threads have been joined
[2025-10-14 01:32:16] 2025-10-13 23:31:47,226 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:47,343 | INFO     | [job] validate thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:47,426 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:47,471 | INFO     | [payload] failed_post thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:47,501 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:47,614 | INFO     | [payload] control thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:47,619 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 01:32:16] 2025-10-13 23:31:47,674 | INFO     | [job] control thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:47,861 | INFO     | [data] control thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:47,932 | INFO     | [data] copytool_out thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:48,056 | INFO     | [payload] validate_post thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:48,308 | INFO     | [data] copytool_in thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:51,626 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:31:56,716 | INFO     | job.realtimelogging is not enabled
[2025-10-14 01:32:16] 2025-10-13 23:31:57,721 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 01:32:16] 2025-10-13 23:32:11,139 | INFO     | [monitor] cgroup control has ended
[2025-10-14 01:32:16] 2025-10-13 23:32:11,415 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140253250611008)>', '<ExcThread(monitor, started 140252610025216)>']
[2025-10-14 01:32:16] 2025-10-13 23:32:15,427 | INFO     | PID=3459471 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 01:32:16] 2025-10-13 23:32:15,427 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 01:32:16] 2025-10-13 23:32:15,427 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 01:32:16] 2025-10-13 23:32:15,427 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 01:32:16] 2025-10-13 23:32:15,427 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 01:32:16] 2025-10-13 23:32:15,427 | INFO     | [monitor] control thread has ended
[2025-10-14 01:32:16] 2025-10-13 23:32:16,440 | INFO     | all workflow threads have been joined
[2025-10-14 01:32:16] 2025-10-13 23:32:16,441 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 01:32:16] 2025-10-13 23:32:16,441 | INFO     | traces error code: 0
[2025-10-14 01:32:16] 2025-10-13 23:32:16,441 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 01:32:16] 2025-10-13 23:32:16,491 [wrapper] ==== pilot stdout END ====
[2025-10-14 01:32:16] 2025-10-13 23:32:16,493 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 01:32:16] 2025-10-13 23:32:16,496 [wrapper] pilotpid: 3459471
[2025-10-14 01:32:16] 2025-10-13 23:32:16,498 [wrapper] Pilot exit status: 0
[2025-10-14 01:32:16] 2025-10-13 23:32:16,505 [wrapper] pandaids: 6841068825
[2025-10-14 01:32:16] 2025-10-13 23:32:16,520 [wrapper] cleanup supervisor_pilot 3478005 3459472
[2025-10-14 01:32:16] 2025-10-13 23:32:16,523 [wrapper] Test setup, not cleaning
[2025-10-14 01:32:16] 2025-10-13 23:32:16,525 [wrapper] apfmon messages muted
[2025-10-14 01:32:16] 2025-10-13 23:32:16,527 [wrapper] ==== wrapper stdout END ====
[2025-10-14 01:32:16] 2025-10-13 23:32:16,529 [wrapper] ==== wrapper stderr END ====
[2025-10-14 01:32:16]  *** Error codes and diagnostics ***
[2025-10-14 01:32:16]     "exeErrorCode": 0,
[2025-10-14 01:32:16]     "exeErrorDiag": "",
[2025-10-14 01:32:16]     "pilotErrorCode": 0,
[2025-10-14 01:32:16]     "pilotErrorDiag": "",
[2025-10-14 01:32:16]  *** Listing of results directory ***
[2025-10-14 01:32:16] total 407680
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc    557409 Oct 13 02:11 pilot3.tar.gz
[2025-10-14 01:32:16] -rwx------ 1 boinc boinc     36292 Oct 13 02:21 runpilot2-wrapper.sh
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc      5112 Oct 13 02:21 queuedata.json
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc       100 Oct 14 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 01:32:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 14 00:12 run_atlas
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc       105 Oct 14 00:12 job.xml
[2025-10-14 01:32:16] -rw-r--r-- 2 boinc boinc 218217752 Oct 14 00:12 EVNT.46676267._004689.pool.root.1
[2025-10-14 01:32:16] -rw-r--r-- 2 boinc boinc    569674 Oct 14 00:12 input.tar.gz
[2025-10-14 01:32:16] -rw-r--r-- 2 boinc boinc     15120 Oct 14 00:12 start_atlas.sh
[2025-10-14 01:32:16] drwxrwx--x 2 boinc boinc      4096 Oct 14 00:12 shared
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc         0 Oct 14 00:12 boinc_setup_complete
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc      6439 Oct 14 00:12 init_data.xml
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc         0 Oct 14 00:12 boinc_lockfile
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc      2550 Oct 14 00:12 pandaJob.out
[2025-10-14 01:32:16] -rw------- 1 boinc boinc    972791 Oct 14 00:12 agis_schedconf.cvmfs.json
[2025-10-14 01:32:16] -rw------- 1 boinc boinc   1560580 Oct 14 00:12 agis_ddmendpoints.agis.ALL.json
[2025-10-14 01:32:16] drwx------ 5 boinc boinc      4096 Oct 14 00:12 pilot3
[2025-10-14 01:32:16] -rw------- 1 boinc boinc 193446879 Oct 14 01:31 HITS.46676269._093061.pool.root.1
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc       529 Oct 14 01:31 boinc_task_state.xml
[2025-10-14 01:32:16] -rw------- 1 boinc boinc        95 Oct 14 01:31 pilot_heartbeat.json
[2025-10-14 01:32:16] -rw------- 1 boinc boinc      1020 Oct 14 01:31 memory_monitor_summary.json
[2025-10-14 01:32:16] -rw------- 1 boinc boinc    252038 Oct 14 01:31 log.46676269._093061.job.log.tgz.1
[2025-10-14 01:32:16] -rw------- 1 boinc boinc      7760 Oct 14 01:31 heartbeat.json
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc        27 Oct 14 01:32 wrapper_checkpoint.txt
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc      8192 Oct 14 01:32 boinc_mmap_file
[2025-10-14 01:32:16] -rw------- 1 boinc boinc      4824 Oct 14 01:32 pilotlog.txt
[2025-10-14 01:32:16] -rw------- 1 boinc boinc    703922 Oct 14 01:32 log.46676269._093061.job.log.1
[2025-10-14 01:32:16] -rw------- 1 boinc boinc       357 Oct 14 01:32 output.list
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc       620 Oct 14 01:32 runtime_log
[2025-10-14 01:32:16] -rw------- 1 boinc boinc    972800 Oct 14 01:32 result.tar.gz
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc      8782 Oct 14 01:32 runtime_log.err
[2025-10-14 01:32:16] -rw------- 1 boinc boinc       659 Oct 14 01:32 q1RNDmvULS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmwMVMDmUQQrlm.diag
[2025-10-14 01:32:16] -rw-r--r-- 1 boinc boinc     11410 Oct 14 01:32 stderr.txt
[2025-10-14 01:32:16] HITS file was successfully produced:
[2025-10-14 01:32:16] -rw------- 1 boinc boinc 193446879 Oct 14 01:31 shared/HITS.pool.root.1
[2025-10-14 01:32:16]  *** Contents of shared directory: ***
[2025-10-14 01:32:16] total 403556
[2025-10-14 01:32:16] -rw-r--r-- 2 boinc boinc 218217752 Oct 14 00:12 ATLAS.root_0
[2025-10-14 01:32:16] -rw-r--r-- 2 boinc boinc    569674 Oct 14 00:12 input.tar.gz
[2025-10-14 01:32:16] -rw-r--r-- 2 boinc boinc     15120 Oct 14 00:12 start_atlas.sh
[2025-10-14 01:32:16] -rw------- 1 boinc boinc 193446879 Oct 14 01:31 HITS.pool.root.1
[2025-10-14 01:32:16] -rw------- 1 boinc boinc    972800 Oct 14 01:32 result.tar.gz
01:32:17 (3455751): run_atlas exited; CPU time 13567.917526
01:32:17 (3455751): called boinc_finish(0)

</stderr_txt>
]]>

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