Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:17:00 (2599842): wrapper (7.7.26015): starting
10:17:00 (2599842): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 10:17:00] Arguments: --nthreads 3
[2025-10-13 10:17:00] Threads: 3
[2025-10-13 10:17:00] Checking for CVMFS
[2025-10-13 10:17:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:17:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:17:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:17:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:17:00] 2.9.2.0 962579 5432 85968 151654 3 9 2904205 36864000 0 130560 0 4332690 99.991 185434 815 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 10:17:00] CVMFS is ok
[2025-10-13 10:17:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 10:17:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 10:17:00] Further information can be found at the LHC@home message board.
[2025-10-13 10:17:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:17:00] Checking for apptainer binary...
[2025-10-13 10:17:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:17:00] Running /usr/bin/apptainer --version
[2025-10-13 10:17:00] apptainer version 1.4.1-1.1
[2025-10-13 10:17:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:17:00] thA330b
[2025-10-13 10:17:00] apptainer works
[2025-10-13 10:17:00] Set ATHENA_PROC_NUMBER=3
[2025-10-13 10:17:00] Set ATHENA_CORE_NUMBER=3
[2025-10-13 10:17:00] Starting ATLAS job with PandaID=6841068650
[2025-10-13 10:17:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 11:38:16]  *** The last 200 lines of the pilot log: ***
[2025-10-13 11:38:16] 2025-10-13 09:37:33,981 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-13 11:38:16] 2025-10-13 09:37:33,995 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,995 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,995 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,995 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,995 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,995 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,995 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | job 6841068650 has completed (purged errors)
[2025-10-13 11:38:16] 2025-10-13 09:37:33,996 | INFO     | overall cleanup function is called
[2025-10-13 11:38:16] 2025-10-13 09:37:35,003 | INFO     | --- collectZombieJob: --- 10, [2609980]
[2025-10-13 11:38:16] 2025-10-13 09:37:35,003 | INFO     | zombie collector waiting for pid 2609980
[2025-10-13 11:38:16] 2025-10-13 09:37:35,003 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 11:38:16] 2025-10-13 09:37:35,003 | INFO     | collected zombie processes
[2025-10-13 11:38:16] 2025-10-13 09:37:35,003 | INFO     | will attempt to kill all subprocesses of pid=2609980
[2025-10-13 11:38:16] 2025-10-13 09:37:35,053 | INFO     | process IDs to be killed: [2609980] (in reverse order)
[2025-10-13 11:38:16] 2025-10-13 09:37:35,078 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 11:38:16] 2025-10-13 09:37:35,079 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 11:38:16] 2025-10-13 09:37:35,080 | INFO     | did not find any defunct processes belonging to 2609980
[2025-10-13 11:38:16] 2025-10-13 09:37:35,081 | INFO     | did not find any defunct processes belonging to 2609980
[2025-10-13 11:38:16] 2025-10-13 09:37:35,082 | INFO     | ready for new job
[2025-10-13 11:38:16] 2025-10-13 09:37:35,082 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 11:38:16] 2025-10-13 09:37:35,082 | INFO     | ***************************************
[2025-10-13 11:38:16] 2025-10-13 09:37:35,082 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 11:38:16] 2025-10-13 09:37:35,082 | INFO     | ***************************************
[2025-10-13 11:38:16] 2025-10-13 09:37:35,082 | INFO     | 
[2025-10-13 11:38:16] 2025-10-13 09:37:35,083 | INFO     | architecture information:
[2025-10-13 11:38:16] 2025-10-13 09:37:35,083 | INFO     | executing command: cat /etc/os-release
[2025-10-13 11:38:16] 2025-10-13 09:37:35,091 | INFO     | cat /etc/os-release:
[2025-10-13 11:38:16] NAME="CentOS Linux"
[2025-10-13 11:38:16] VERSION="7 (Core)"
[2025-10-13 11:38:16] ID="centos"
[2025-10-13 11:38:16] ID_LIKE="rhel fedora"
[2025-10-13 11:38:16] VERSION_ID="7"
[2025-10-13 11:38:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 11:38:16] ANSI_COLOR="0;31"
[2025-10-13 11:38:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 11:38:16] HOME_URL="https://www.centos.org/"
[2025-10-13 11:38:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 11:38:16] 
[2025-10-13 11:38:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 11:38:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 11:38:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 11:38:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 11:38:16] 
[2025-10-13 11:38:16] 2025-10-13 09:37:35,092 | INFO     | ***************************************
[2025-10-13 11:38:16] 2025-10-13 09:37:35,595 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 11:38:16] 2025-10-13 09:37:35,607 | INFO     | sufficient remaining disk space (258825256960 B)
[2025-10-13 11:38:16] 2025-10-13 09:37:35,608 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 11:38:16] 2025-10-13 09:37:35,608 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 11:38:16] 2025-10-13 09:37:35,608 | INFO     | update_server=False
[2025-10-13 11:38:16] 2025-10-13 09:37:35,608 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 11:38:16] 2025-10-13 09:37:35,608 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:38:16] 2025-10-13 09:37:35,608 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 11:38:16] 2025-10-13 09:37:35,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:38:16] 2025-10-13 09:37:35,608 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 11:38:16] 2025-10-13 09:37:35,608 | INFO     | aborting loop
[2025-10-13 11:38:16] 2025-10-13 09:37:35,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 11:38:16] 2025-10-13 09:37:35,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 11:38:16] 2025-10-13 09:37:35,637 | INFO     | all payload control threads have been joined
[2025-10-13 11:38:16] 2025-10-13 09:37:35,640 | INFO     | all job control threads have been joined
[2025-10-13 11:38:16] 2025-10-13 09:37:35,667 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 11:38:16] 2025-10-13 09:37:35,937 | INFO     | all data control threads have been joined
[2025-10-13 11:38:16] 2025-10-13 09:37:36,614 | INFO     | [job] queue monitor thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:36,614 | INFO     | [job] retrieve thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:36,614 | INFO     | [job] job monitor thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:36,643 | INFO     | [payload] control thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:36,646 | INFO     | [job] control thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:36,684 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:36,722 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:36,754 | INFO     | [payload] failed_post thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:36,886 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 11:38:16] 2025-10-13 09:37:36,943 | INFO     | [data] control thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:37,017 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:37,278 | INFO     | [payload] validate_post thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:37,489 | INFO     | [data] copytool_in thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:37,673 | INFO     | [data] copytool_out thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:38,008 | INFO     | [job] validate thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:38,104 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:37:40,891 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 11:38:16] 2025-10-13 09:38:11,136 | INFO     | [monitor] cgroup control has ended
[2025-10-13 11:38:16] 2025-10-13 09:38:11,757 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140005647284032)>', '<ExcThread(monitor, started 140004793775872)>']
[2025-10-13 11:38:16] 2025-10-13 09:38:11,790 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 11:38:16] 2025-10-13 09:38:11,790 | INFO     | [monitor] control thread has ended
[2025-10-13 11:38:16] 2025-10-13 09:38:16,783 | INFO     | all workflow threads have been joined
[2025-10-13 11:38:16] 2025-10-13 09:38:16,783 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 11:38:16] 2025-10-13 09:38:16,783 | INFO     | traces error code: 0
[2025-10-13 11:38:16] 2025-10-13 09:38:16,783 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 11:38:16] 2025-10-13 09:38:16,835 [wrapper] ==== pilot stdout END ====
[2025-10-13 11:38:16] 2025-10-13 09:38:16,837 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 11:38:16] 2025-10-13 09:38:16,840 [wrapper] pilotpid: 2603554
[2025-10-13 11:38:16] 2025-10-13 09:38:16,842 [wrapper] Pilot exit status: 0
[2025-10-13 11:38:16] 2025-10-13 09:38:16,849 [wrapper] pandaids: 6841068650
[2025-10-13 11:38:16] 2025-10-13 09:38:16,866 [wrapper] cleanup supervisor_pilot 2622170 2603555
[2025-10-13 11:38:16] 2025-10-13 09:38:16,868 [wrapper] Test setup, not cleaning
[2025-10-13 11:38:16] 2025-10-13 09:38:16,871 [wrapper] apfmon messages muted
[2025-10-13 11:38:16] 2025-10-13 09:38:16,873 [wrapper] ==== wrapper stdout END ====
[2025-10-13 11:38:16] 2025-10-13 09:38:16,875 [wrapper] ==== wrapper stderr END ====
[2025-10-13 11:38:16]  *** Error codes and diagnostics ***
[2025-10-13 11:38:16]     "exeErrorCode": 0,
[2025-10-13 11:38:16]     "exeErrorDiag": "",
[2025-10-13 11:38:16]     "pilotErrorCode": 0,
[2025-10-13 11:38:16]     "pilotErrorDiag": "",
[2025-10-13 11:38:16]  *** Listing of results directory ***
[2025-10-13 11:38:16] total 412296
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc    557409 Oct 13 02:02 pilot3.tar.gz
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc      5112 Oct 13 02:09 queuedata.json
[2025-10-13 11:38:16] -rwx------ 1 boinc boinc     36292 Oct 13 02:11 runpilot2-wrapper.sh
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc       100 Oct 13 10:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 11:38:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 10:17 run_atlas
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc       105 Oct 13 10:17 job.xml
[2025-10-13 11:38:16] -rw-r--r-- 2 boinc boinc 222902023 Oct 13 10:17 EVNT.46676267._002377.pool.root.1
[2025-10-13 11:38:16] -rw-r--r-- 2 boinc boinc    569682 Oct 13 10:17 input.tar.gz
[2025-10-13 11:38:16] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:17 start_atlas.sh
[2025-10-13 11:38:16] drwxrwx--x 2 boinc boinc      4096 Oct 13 10:17 shared
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:17 boinc_setup_complete
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc      6439 Oct 13 10:17 init_data.xml
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:17 boinc_lockfile
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc      2550 Oct 13 10:17 pandaJob.out
[2025-10-13 11:38:16] -rw------- 1 boinc boinc    972857 Oct 13 10:17 agis_schedconf.cvmfs.json
[2025-10-13 11:38:16] -rw------- 1 boinc boinc   1560580 Oct 13 10:17 agis_ddmendpoints.agis.ALL.json
[2025-10-13 11:38:16] drwx------ 5 boinc boinc      4096 Oct 13 10:17 pilot3
[2025-10-13 11:38:16] -rw------- 1 boinc boinc 193487924 Oct 13 11:37 HITS.46676269._092886.pool.root.1
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc       529 Oct 13 11:37 boinc_task_state.xml
[2025-10-13 11:38:16] -rw------- 1 boinc boinc      1018 Oct 13 11:37 memory_monitor_summary.json
[2025-10-13 11:38:16] -rw------- 1 boinc boinc    244550 Oct 13 11:37 log.46676269._092886.job.log.tgz.1
[2025-10-13 11:38:16] -rw------- 1 boinc boinc        95 Oct 13 11:37 pilot_heartbeat.json
[2025-10-13 11:38:16] -rw------- 1 boinc boinc      7762 Oct 13 11:37 heartbeat.json
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc      8192 Oct 13 11:38 boinc_mmap_file
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc        27 Oct 13 11:38 wrapper_checkpoint.txt
[2025-10-13 11:38:16] -rw------- 1 boinc boinc      4556 Oct 13 11:38 pilotlog.txt
[2025-10-13 11:38:16] -rw------- 1 boinc boinc    710753 Oct 13 11:38 log.46676269._092886.job.log.1
[2025-10-13 11:38:16] -rw------- 1 boinc boinc       357 Oct 13 11:38 output.list
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc       620 Oct 13 11:38 runtime_log
[2025-10-13 11:38:16] -rw------- 1 boinc boinc    972800 Oct 13 11:38 result.tar.gz
[2025-10-13 11:38:16] -rw------- 1 boinc boinc       659 Oct 13 11:38 vgTLDm0KLS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOAmNDmRUzTCn.diag
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc      8782 Oct 13 11:38 runtime_log.err
[2025-10-13 11:38:16] -rw-r--r-- 1 boinc boinc     12861 Oct 13 11:38 stderr.txt
[2025-10-13 11:38:16] HITS file was successfully produced:
[2025-10-13 11:38:16] -rw------- 1 boinc boinc 193487924 Oct 13 11:37 shared/HITS.pool.root.1
[2025-10-13 11:38:16]  *** Contents of shared directory: ***
[2025-10-13 11:38:16] total 408168
[2025-10-13 11:38:16] -rw-r--r-- 2 boinc boinc 222902023 Oct 13 10:17 ATLAS.root_0
[2025-10-13 11:38:16] -rw-r--r-- 2 boinc boinc    569682 Oct 13 10:17 input.tar.gz
[2025-10-13 11:38:16] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:17 start_atlas.sh
[2025-10-13 11:38:16] -rw------- 1 boinc boinc 193487924 Oct 13 11:37 HITS.pool.root.1
[2025-10-13 11:38:16] -rw------- 1 boinc boinc    972800 Oct 13 11:38 result.tar.gz
11:38:18 (2599842): run_atlas exited; CPU time 13808.528706
11:38:18 (2599842): called boinc_finish(0)

</stderr_txt>
]]>

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