Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:09:20 (8147): wrapper (7.7.26015): starting
04:09:20 (8147): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 04:09:20] Arguments: --nthreads 8
[2025-10-13 04:09:20] Threads: 8
[2025-10-13 04:09:20] Checking for CVMFS
[2025-10-13 04:09:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:09:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:09:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:09:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:09:21] 2.11.2.0 1598 217384 124664 151653 3 188 11521253 20275200 917 130560 1 224161900 99.992 11743212 11202 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 04:09:21] CVMFS is ok
[2025-10-13 04:09:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:09:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:09:21] Further information can be found at the LHC@home message board.
[2025-10-13 04:09:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:09:21] Checking for apptainer binary...
[2025-10-13 04:09:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:09:21] Running /usr/bin/apptainer --version
[2025-10-13 04:09:21] apptainer version 1.3.2-1.el7
[2025-10-13 04:09:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:09:22] c-205-36.aglt2.org
[2025-10-13 04:09:22] apptainer works
[2025-10-13 04:09:22] Set ATHENA_PROC_NUMBER=8
[2025-10-13 04:09:22] Set ATHENA_CORE_NUMBER=8
[2025-10-13 04:09:22] Starting ATLAS job with PandaID=6842281426
[2025-10-13 04:09:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:18:46]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:18:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6842281426/log.46676269._096020.job.log.tgz.1
[2025-10-13 05:18:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/19/2a/log.46676269._096020.job.log.tgz.1
[2025-10-13 05:18:46]  workdir=None
[2025-10-13 05:18:46] ]
[2025-10-13 05:18:46] 2025-10-13 09:17:39,928 | INFO     | transferring file log.46676269._096020.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6842281426/log.46676269._096020.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 05:18:46] 2025-10-13 09:17:39,928 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6842281426/log.46676269._096020.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._096020.job
[2025-10-13 05:18:46] 2025-10-13 09:17:39,946 | INFO     | adding to output.list: log.46676269._096020.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/19/2a/log.46676269._096020.job.log.tg
[2025-10-13 05:18:46] 2025-10-13 09:17:39,947 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:18:46] 2025-10-13 09:17:39,947 | INFO     | summary of transferred files:
[2025-10-13 05:18:46] 2025-10-13 09:17:39,947 | INFO     |  -- lfn=log.46676269._096020.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:18:46] 2025-10-13 09:17:39,948 | INFO     | stage-out finished correctly
[2025-10-13 05:18:46] 2025-10-13 09:17:40,010 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:18:46] 2025-10-13 09:17:41,101 | INFO     | time since job start (4088s) is within the limit (172800.0s)
[2025-10-13 05:18:46] 2025-10-13 09:17:41,876 | INFO     | job 6842281426 has state=finished
[2025-10-13 05:18:46] 2025-10-13 09:17:41,877 | INFO     | preparing for final server update for job 6842281426 in state='finished'
[2025-10-13 05:18:46] 2025-10-13 09:17:41,877 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:18:46] 2025-10-13 09:17:41,878 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:18:46] 2025-10-13 09:17:41,878 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:18:46] 2025-10-13 09:17:41,878 | INFO     | job 6842281426 has finished - writing final server update
[2025-10-13 05:18:46] 2025-10-13 09:17:41,878 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:18:46] 2025-10-13 09:17:41,879 | INFO     | executing command: lscpu
[2025-10-13 05:18:46] 2025-10-13 09:17:41,912 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:18:46] 2025-10-13 09:17:42,009 | WARNING  | process 18208 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 05:18:46] 2025-10-13 09:17:42,010 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6842281426/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:18:46] 2025-10-13 09:17:42,088 | INFO     | number of running child processes to parent process 18208: 1
[2025-10-13 05:18:46] 2025-10-13 09:17:42,088 | INFO     | maximum number of monitored processes: 6
[2025-10-13 05:18:46] 2025-10-13 09:17:43,106 | INFO     | time since job start (4090s) is within the limit (172800.0s)
[2025-10-13 05:18:46] 2025-10-13 09:17:44,590 | INFO     | monitor loop #303: job 0:6842281426 is in state 'finished'
[2025-10-13 05:18:46] 2025-10-13 09:17:44,591 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:18:46] 2025-10-13 09:17:45,107 | INFO     | time since job start (4092s) is within the limit (172800.0s)
[2025-10-13 05:18:46] 2025-10-13 09:17:47,094 | INFO     | monitor loop #304: job 0:6842281426 is in state 'finished'
[2025-10-13 05:18:46] 2025-10-13 09:17:47,094 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:18:46] 2025-10-13 09:17:47,108 | INFO     | time since job start (4094s) is within the limit (172800.0s)
[2025-10-13 05:18:46] 2025-10-13 09:17:47,653 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 05:18:46] 2025-10-13 09:17:47,658 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2032.2963750000001
[2025-10-13 05:18:46] 2025-10-13 09:17:47,662 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6842281426/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:18:46] 2025-10-13 09:17:47,663 | INFO     | extracted standard info from prmon json
[2025-10-13 05:18:46] 2025-10-13 09:17:47,663 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:18:46] 2025-10-13 09:17:47,663 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:18:46] 2025-10-13 09:17:47,664 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:18:46] 2025-10-13 09:17:47,664 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:18:46] 2025-10-13 09:17:47,666 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:18:46] 2025-10-13 09:17:47,666 | INFO     | sum of square deviations: 66959395.0
[2025-10-13 05:18:46] 2025-10-13 09:17:47,666 | INFO     | sum of deviations: -9247904.999999959
[2025-10-13 05:18:46] 2025-10-13 09:17:47,667 | INFO     | mean x: 1760345103.5
[2025-10-13 05:18:46] 2025-10-13 09:17:47,667 | INFO     | mean y: 2529281.533333333
[2025-10-13 05:18:46] 2025-10-13 09:17:47,667 | INFO     | -- intersect: 245654302.0682873
[2025-10-13 05:18:46] 2025-10-13 09:17:47,667 | INFO     | intersect: 245654302.0682873
[2025-10-13 05:18:46] 2025-10-13 09:17:47,667 | INFO     | chi2: 0.006501257757794214
[2025-10-13 05:18:46] 2025-10-13 09:17:47,667 | INFO     | -- intersect: 245654302.0682873
[2025-10-13 05:18:46] 2025-10-13 09:17:47,668 | INFO     | current memory leak: -0.14 B/s (using 60 data points, chi2=0.01)
[2025-10-13 05:18:46] 2025-10-13 09:17:47,668 | INFO     | could have reported an average CPU frequency of 2239 MHz (6 samples)
[2025-10-13 05:18:46] 2025-10-13 09:17:47,668 | INFO     | ..............................
[2025-10-13 05:18:46] 2025-10-13 09:17:47,668 | INFO     | . Timing measurements:
[2025-10-13 05:18:46] 2025-10-13 09:17:47,668 | INFO     | . get job = 0 s
[2025-10-13 05:18:46] 2025-10-13 09:17:47,669 | INFO     | . initial setup = 2 s
[2025-10-13 05:18:46] 2025-10-13 09:17:47,669 | INFO     | . payload setup = 5 s
[2025-10-13 05:18:46] 2025-10-13 09:17:47,669 | INFO     | . stage-in = 0 s
[2025-10-13 05:18:46] 2025-10-13 09:17:47,669 | INFO     | . payload execution = 4060 s
[2025-10-13 05:18:46] 2025-10-13 09:17:47,669 | INFO     | . stage-out = 0 s
[2025-10-13 05:18:46] 2025-10-13 09:17:47,669 | INFO     | . log creation = 0 s
[2025-10-13 05:18:46] 2025-10-13 09:17:47,669 | INFO     | ..............................
[2025-10-13 05:18:46] 2025-10-13 09:17:47,752 | INFO     | 
[2025-10-13 05:18:46] 2025-10-13 09:17:47,753 | INFO     | job summary report
[2025-10-13 05:18:46] 2025-10-13 09:17:47,753 | INFO     | --------------------------------------------------
[2025-10-13 05:18:46] 2025-10-13 09:17:47,753 | INFO     | PanDA job id: 6842281426
[2025-10-13 05:18:46] 2025-10-13 09:17:47,753 | INFO     | task id: 46676269
[2025-10-13 05:18:46] 2025-10-13 09:17:47,753 | INFO     | errors: (none)
[2025-10-13 05:18:46] 2025-10-13 09:17:47,753 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:18:46] 2025-10-13 09:17:47,753 | INFO     | pilot state: finished 
[2025-10-13 05:18:46] 2025-10-13 09:17:47,754 | INFO     | transexitcode: 0
[2025-10-13 05:18:46] 2025-10-13 09:17:47,754 | INFO     | exeerrorcode: 0
[2025-10-13 05:18:46] 2025-10-13 09:17:47,754 | INFO     | exeerrordiag: 
[2025-10-13 05:18:46] 2025-10-13 09:17:47,754 | INFO     | exitcode: 0
[2025-10-13 05:18:46] 2025-10-13 09:17:47,754 | INFO     | exitmsg: OK
[2025-10-13 05:18:46] 2025-10-13 09:17:47,754 | INFO     | cpuconsumptiontime: 29920 s
[2025-10-13 05:18:46] 2025-10-13 09:17:47,754 | INFO     | nevents: 400
[2025-10-13 05:18:46] 2025-10-13 09:17:47,754 | INFO     | neventsw: 0
[2025-10-13 05:18:46] 2025-10-13 09:17:47,754 | INFO     | pid: 18208
[2025-10-13 05:18:46] 2025-10-13 09:17:47,755 | INFO     | pgrp: 18208
[2025-10-13 05:18:46] 2025-10-13 09:17:47,755 | INFO     | corecount: 8
[2025-10-13 05:18:46] 2025-10-13 09:17:47,755 | INFO     | event service: False
[2025-10-13 05:18:46] 2025-10-13 09:17:47,755 | INFO     | sizes: {0: 2348807, 4: 2349069, 11: 2349097, 4070: 2375103, 4071: 2384157, 4079: 2384295}
[2025-10-13 05:18:46] 2025-10-13 09:17:47,755 | INFO     | --------------------------------------------------
[2025-10-13 05:18:46] 2025-10-13 09:17:47,755 | INFO     | 
[2025-10-13 05:18:46] 2025-10-13 09:17:47,755 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 05:18:46] 2025-10-13 09:17:47,777 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,778 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,778 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,778 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,778 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,778 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,778 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,778 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,779 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,779 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,779 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,779 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,779 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,779 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,779 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:18:46] 2025-10-13 09:17:47,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,780 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:18:46] 2025-10-13 09:17:47,780 | INFO     | job 6842281426 has completed (purged errors)
[2025-10-13 05:18:46] 2025-10-13 09:17:47,780 | INFO     | overall cleanup function is called
[2025-10-13 05:18:46] 2025-10-13 09:17:48,786 | INFO     | --- collectZombieJob: --- 10, [18208]
[2025-10-13 05:18:46] 2025-10-13 09:17:48,786 | INFO     | zombie collector waiting for pid 18208
[2025-10-13 05:18:46] 2025-10-13 09:17:48,787 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:18:46] 2025-10-13 09:17:48,787 | INFO     | collected zombie processes
[2025-10-13 05:18:46] 2025-10-13 09:17:48,787 | INFO     | will attempt to kill all subprocesses of pid=18208
[2025-10-13 05:18:46] 2025-10-13 09:17:48,902 | INFO     | process IDs to be killed: [18208] (in reverse order)
[2025-10-13 05:18:46] 2025-10-13 09:17:48,963 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:18:46] 2025-10-13 09:17:48,964 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:18:46] 2025-10-13 09:17:48,967 | INFO     | did not find any defunct processes belonging to 18208
[2025-10-13 05:18:46] 2025-10-13 09:17:48,970 | INFO     | did not find any defunct processes belonging to 18208
[2025-10-13 05:18:46] 2025-10-13 09:17:48,971 | INFO     | ready for new job
[2025-10-13 05:18:46] 2025-10-13 09:17:48,971 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:18:46] 2025-10-13 09:17:48,972 | INFO     | ***************************************
[2025-10-13 05:18:46] 2025-10-13 09:17:48,973 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:18:46] 2025-10-13 09:17:48,973 | INFO     | ***************************************
[2025-10-13 05:18:46] 2025-10-13 09:17:48,973 | INFO     | 
[2025-10-13 05:18:46] 2025-10-13 09:17:48,974 | INFO     | architecture information:
[2025-10-13 05:18:46] 2025-10-13 09:17:48,974 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:18:46] 2025-10-13 09:17:48,990 | INFO     | cat /etc/os-release:
[2025-10-13 05:18:46] NAME="CentOS Linux"
[2025-10-13 05:18:46] VERSION="7 (Core)"
[2025-10-13 05:18:46] ID="centos"
[2025-10-13 05:18:46] ID_LIKE="rhel fedora"
[2025-10-13 05:18:46] VERSION_ID="7"
[2025-10-13 05:18:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:18:46] ANSI_COLOR="0;31"
[2025-10-13 05:18:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:18:46] HOME_URL="https://www.centos.org/"
[2025-10-13 05:18:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:18:46] 
[2025-10-13 05:18:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:18:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:18:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:18:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:18:46] 
[2025-10-13 05:18:46] 2025-10-13 09:17:48,990 | INFO     | ***************************************
[2025-10-13 05:18:46] 2025-10-13 09:17:49,491 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 05:18:46] 2025-10-13 09:17:49,510 | INFO     | sufficient remaining disk space (32743882752 B)
[2025-10-13 05:18:46] 2025-10-13 09:17:49,511 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:18:46] 2025-10-13 09:17:49,511 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:18:46] 2025-10-13 09:17:49,511 | INFO     | update_server=False
[2025-10-13 05:18:46] 2025-10-13 09:17:49,511 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:18:46] 2025-10-13 09:17:49,512 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:18:46] 2025-10-13 09:17:49,597 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 05:18:46] 2025-10-13 09:17:49,597 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 05:18:46] 2025-10-13 09:17:49,598 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:18:46] 2025-10-13 09:17:49,598 | INFO     | will abort loop
[2025-10-13 05:18:46] 2025-10-13 09:17:50,258 | INFO     | all data control threads have been joined
[2025-10-13 05:18:46] 2025-10-13 09:17:50,517 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:50,517 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:50,521 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:18:46] 2025-10-13 09:17:50,603 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:50,603 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:18:46] 2025-10-13 09:17:50,656 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:50,778 | INFO     | all payload control threads have been joined
[2025-10-13 05:18:46] 2025-10-13 09:17:50,974 | INFO     | all job control threads have been joined
[2025-10-13 05:18:46] 2025-10-13 09:17:51,176 | INFO     | [job] validate thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:51,264 | INFO     | [data] control thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:51,340 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:51,341 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:51,450 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:51,492 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:51,768 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:51,783 | INFO     | [payload] control thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:51,976 | INFO     | [job] control thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:52,527 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:54,609 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:17:59,989 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:18:46] 2025-10-13 09:18:00,991 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:18:46] 2025-10-13 09:18:20,340 | INFO     | PID=11818 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 05:18:46] 2025-10-13 09:18:20,340 | INFO     | .. there are 2 such processes running
[2025-10-13 05:18:46] 2025-10-13 09:18:20,340 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:18:46] 2025-10-13 09:18:20,340 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:18:46] 2025-10-13 09:18:20,340 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:18:46] 2025-10-13 09:18:40,034 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:18:46] 2025-10-13 09:18:41,199 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033862711104)>', '<ExcThread(monitor, started 140033440868096)>']
[2025-10-13 05:18:46] 2025-10-13 09:18:41,441 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:18:46] 2025-10-13 09:18:41,442 | INFO     | [monitor] control thread has ended
[2025-10-13 05:18:46] 2025-10-13 09:18:46,220 | INFO     | all workflow threads have been joined
[2025-10-13 05:18:46] 2025-10-13 09:18:46,221 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:18:46] 2025-10-13 09:18:46,222 | INFO     | traces error code: 0
[2025-10-13 05:18:46] 2025-10-13 09:18:46,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:18:46] 2025-10-13 09:18:46,356 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:18:46] 2025-10-13 09:18:46,359 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:18:46] 2025-10-13 09:18:46,363 [wrapper] pilotpid: 11818
[2025-10-13 05:18:46] 2025-10-13 09:18:46,365 [wrapper] Pilot exit status: 0
[2025-10-13 05:18:46] 2025-10-13 09:18:46,378 [wrapper] pandaids: 6842281426
[2025-10-13 05:18:46] 2025-10-13 09:18:46,422 [wrapper] cleanup supervisor_pilot 31006 11819
[2025-10-13 05:18:46] 2025-10-13 09:18:46,426 [wrapper] Test setup, not cleaning
[2025-10-13 05:18:46] 2025-10-13 09:18:46,430 [wrapper] apfmon messages muted
[2025-10-13 05:18:46] 2025-10-13 09:18:46,433 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:18:46] 2025-10-13 09:18:46,437 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:18:46]  *** Error codes and diagnostics ***
[2025-10-13 05:18:46]     "exeErrorCode": 0,
[2025-10-13 05:18:46]     "exeErrorDiag": "",
[2025-10-13 05:18:46]     "pilotErrorCode": 0,
[2025-10-13 05:18:46]     "pilotErrorDiag": "",
[2025-10-13 05:18:46]  *** Listing of results directory ***
[2025-10-13 05:18:46] total 413032
[2025-10-13 05:18:46] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 23:15 pilot3.tar.gz
[2025-10-13 05:18:46] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 23:38 queuedata.json
[2025-10-13 05:18:46] -rwx------ 1 boincer umatlas     36292 Oct 12 23:39 runpilot2-wrapper.sh
[2025-10-13 05:18:46] -rw-r--r-- 1 boincer umatlas       100 Oct 13 04:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:18:46] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 04:09 run_atlas
[2025-10-13 05:18:46] -rw-r--r-- 1 boincer umatlas       105 Oct 13 04:09 job.xml
[2025-10-13 05:18:46] -rw-r--r-- 2 boincer umatlas 221034256 Oct 13 04:09 EVNT.46676267._003791.pool.root.1
[2025-10-13 05:18:46] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 04:09 start_atlas.sh
[2025-10-13 05:18:46] drwxrwx--x 2 boincer umatlas      4096 Oct 13 04:09 shared
[2025-10-13 05:18:46] -rw-r--r-- 2 boincer umatlas    569682 Oct 13 04:09 input.tar.gz
[2025-10-13 05:18:46] -rw-r--r-- 1 boincer umatlas         0 Oct 13 04:09 boinc_lockfile
[2025-10-13 05:18:46] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 04:09 pandaJob.out
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas    972849 Oct 13 04:09 agis_schedconf.cvmfs.json
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas   1560580 Oct 13 04:09 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:18:46] drwx------ 5 boincer umatlas      4096 Oct 13 04:09 pilot3
[2025-10-13 05:18:46] -rw-r--r-- 1 boincer umatlas      6135 Oct 13 05:09 init_data.xml
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas 196125062 Oct 13 05:17 HITS.46676269._096020.pool.root.1
[2025-10-13 05:18:46] -rw-r--r-- 1 boincer umatlas       529 Oct 13 05:17 boinc_task_state.xml
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas        95 Oct 13 05:17 pilot_heartbeat.json
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas      1045 Oct 13 05:17 memory_monitor_summary.json
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas    328180 Oct 13 05:17 log.46676269._096020.job.log.tgz.1
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas      7829 Oct 13 05:17 heartbeat.json
[2025-10-13 05:18:46] -rw-r--r-- 1 boincer umatlas        27 Oct 13 05:18 wrapper_checkpoint.txt
[2025-10-13 05:18:46] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 05:18 boinc_mmap_file
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas      5079 Oct 13 05:18 pilotlog.txt
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas    611440 Oct 13 05:18 log.46676269._096020.job.log.1
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas       357 Oct 13 05:18 output.list
[2025-10-13 05:18:46] -rw-r--r-- 1 boincer umatlas       620 Oct 13 05:18 runtime_log
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas    962560 Oct 13 05:18 result.tar.gz
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas       657 Oct 13 05:18 WEfKDmFaOS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmbfVMDmAY5sGo.diag
[2025-10-13 05:18:46] -rw-r--r-- 1 boincer umatlas      8703 Oct 13 05:18 runtime_log.err
[2025-10-13 05:18:46] -rw-r--r-- 1 boincer umatlas     22196 Oct 13 05:18 stderr.txt
[2025-10-13 05:18:46] HITS file was successfully produced:
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas 196125062 Oct 13 05:17 shared/HITS.pool.root.1
[2025-10-13 05:18:46]  *** Contents of shared directory: ***
[2025-10-13 05:18:46] total 408908
[2025-10-13 05:18:46] -rw-r--r-- 2 boincer umatlas 221034256 Oct 13 04:09 ATLAS.root_0
[2025-10-13 05:18:46] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 04:09 start_atlas.sh
[2025-10-13 05:18:46] -rw-r--r-- 2 boincer umatlas    569682 Oct 13 04:09 input.tar.gz
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas 196125062 Oct 13 05:17 HITS.pool.root.1
[2025-10-13 05:18:46] -rw------- 1 boincer umatlas    962560 Oct 13 05:18 result.tar.gz
05:18:47 (8147): run_atlas exited; CPU time 29927.908384
05:18:47 (8147): called boinc_finish(0)

</stderr_txt>
]]>

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