Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:39:52 (3447675): wrapper (7.7.26015): starting
18:39:52 (3447675): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 18:39:52] Arguments: --nthreads 3
[2025-10-13 18:39:52] Threads: 3
[2025-10-13 18:39:52] Checking for CVMFS
[2025-10-13 18:39:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 18:39:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 18:39:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 18:39:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 18:39:52] 2.9.2.0 1670520 5828 82568 151667 0 57 30296191 36864001 0 130560 0 4661062 99.991 206891 818 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 18:39:52] CVMFS is ok
[2025-10-13 18:39:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 18:39:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 18:39:52] Further information can be found at the LHC@home message board.
[2025-10-13 18:39:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 18:39:52] Checking for apptainer binary...
[2025-10-13 18:39:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 18:39:52] Running /usr/bin/apptainer --version
[2025-10-13 18:39:52] apptainer version 1.4.1-1.1
[2025-10-13 18:39:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 18:39:52] magicA246
[2025-10-13 18:39:52] apptainer works
[2025-10-13 18:39:52] Set ATHENA_PROC_NUMBER=3
[2025-10-13 18:39:52] Set ATHENA_CORE_NUMBER=3
[2025-10-13 18:39:52] Starting ATLAS job with PandaID=6842334946
[2025-10-13 18:39:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 20:01:09]  *** The last 200 lines of the pilot log: ***
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,224 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,225 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,225 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 20:01:09] 2025-10-13 18:00:24,225 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,225 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 20:01:09] 2025-10-13 18:00:24,225 | INFO     | job 6842334946 has completed (purged errors)
[2025-10-13 20:01:09] 2025-10-13 18:00:24,225 | INFO     | overall cleanup function is called
[2025-10-13 20:01:09] 2025-10-13 18:00:25,231 | INFO     | --- collectZombieJob: --- 10, [3457840]
[2025-10-13 20:01:09] 2025-10-13 18:00:25,232 | INFO     | zombie collector waiting for pid 3457840
[2025-10-13 20:01:09] 2025-10-13 18:00:25,232 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 20:01:09] 2025-10-13 18:00:25,232 | INFO     | collected zombie processes
[2025-10-13 20:01:09] 2025-10-13 18:00:25,232 | INFO     | will attempt to kill all subprocesses of pid=3457840
[2025-10-13 20:01:09] 2025-10-13 18:00:25,275 | INFO     | process IDs to be killed: [3457840] (in reverse order)
[2025-10-13 20:01:09] 2025-10-13 18:00:25,301 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 20:01:09] 2025-10-13 18:00:25,301 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 20:01:09] 2025-10-13 18:00:25,302 | INFO     | did not find any defunct processes belonging to 3457840
[2025-10-13 20:01:09] 2025-10-13 18:00:25,303 | INFO     | did not find any defunct processes belonging to 3457840
[2025-10-13 20:01:09] 2025-10-13 18:00:25,303 | INFO     | ready for new job
[2025-10-13 20:01:09] 2025-10-13 18:00:25,303 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 20:01:09] 2025-10-13 18:00:25,304 | INFO     | ***************************************
[2025-10-13 20:01:09] 2025-10-13 18:00:25,304 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 20:01:09] 2025-10-13 18:00:25,304 | INFO     | ***************************************
[2025-10-13 20:01:09] 2025-10-13 18:00:25,304 | INFO     | 
[2025-10-13 20:01:09] 2025-10-13 18:00:25,305 | INFO     | architecture information:
[2025-10-13 20:01:09] 2025-10-13 18:00:25,305 | INFO     | executing command: cat /etc/os-release
[2025-10-13 20:01:09] 2025-10-13 18:00:25,314 | INFO     | cat /etc/os-release:
[2025-10-13 20:01:09] NAME="CentOS Linux"
[2025-10-13 20:01:09] VERSION="7 (Core)"
[2025-10-13 20:01:09] ID="centos"
[2025-10-13 20:01:09] ID_LIKE="rhel fedora"
[2025-10-13 20:01:09] VERSION_ID="7"
[2025-10-13 20:01:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 20:01:09] ANSI_COLOR="0;31"
[2025-10-13 20:01:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 20:01:09] HOME_URL="https://www.centos.org/"
[2025-10-13 20:01:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 20:01:09] 
[2025-10-13 20:01:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 20:01:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 20:01:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 20:01:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 20:01:09] 
[2025-10-13 20:01:09] 2025-10-13 18:00:25,314 | INFO     | ***************************************
[2025-10-13 20:01:09] 2025-10-13 18:00:25,817 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 20:01:09] 2025-10-13 18:00:25,831 | INFO     | sufficient remaining disk space (375918690304 B)
[2025-10-13 20:01:09] 2025-10-13 18:00:25,831 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 20:01:09] 2025-10-13 18:00:25,831 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 20:01:09] 2025-10-13 18:00:25,831 | INFO     | update_server=False
[2025-10-13 20:01:09] 2025-10-13 18:00:25,831 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 20:01:09] 2025-10-13 18:00:25,832 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 20:01:09] 2025-10-13 18:00:25,832 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:01:09] 2025-10-13 18:00:25,843 | INFO     | all payload control threads have been joined
[2025-10-13 20:01:09] 2025-10-13 18:00:26,025 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:01:09] 2025-10-13 18:00:26,026 | INFO     | aborting loop
[2025-10-13 20:01:09] 2025-10-13 18:00:26,834 | INFO     | [job] queue monitor thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:26,837 | INFO     | [job] retrieve thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:26,847 | INFO     | [payload] control thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:26,877 | INFO     | all data control threads have been joined
[2025-10-13 20:01:09] 2025-10-13 18:00:27,031 | INFO     | [job] job monitor thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:27,085 | INFO     | all job control threads have been joined
[2025-10-13 20:01:09] 2025-10-13 18:00:27,224 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:27,325 | INFO     | [data] copytool_in thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:27,543 | INFO     | [job] validate thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:27,656 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:27,662 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:27,759 | INFO     | [payload] failed_post thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:27,837 | INFO     | [data] copytool_out thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:27,883 | INFO     | [data] control thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:28,086 | INFO     | [job] control thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:28,255 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:28,318 | INFO     | [payload] validate_post thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:29,288 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 20:01:09] 2025-10-13 18:00:33,295 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 20:01:09] 2025-10-13 18:00:56,003 | INFO     | PID=3451395 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 20:01:09] 2025-10-13 18:00:56,003 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 20:01:09] 2025-10-13 18:00:56,003 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 20:01:09] 2025-10-13 18:00:56,003 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 20:01:09] 2025-10-13 18:01:04,423 | INFO     | [monitor] cgroup control has ended
[2025-10-13 20:01:09] 2025-10-13 18:01:04,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140402896570176)>', '<ExcThread(monitor, started 140402271184640)>']
[2025-10-13 20:01:09] 2025-10-13 18:01:05,047 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 20:01:09] 2025-10-13 18:01:05,047 | INFO     | [monitor] control thread has ended
[2025-10-13 20:01:09] 2025-10-13 18:01:09,737 | INFO     | all workflow threads have been joined
[2025-10-13 20:01:09] 2025-10-13 18:01:09,737 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 20:01:09] 2025-10-13 18:01:09,738 | INFO     | traces error code: 0
[2025-10-13 20:01:09] 2025-10-13 18:01:09,738 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 20:01:09] 2025-10-13 18:01:09,793 [wrapper] ==== pilot stdout END ====
[2025-10-13 20:01:09] 2025-10-13 18:01:09,795 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 20:01:09] 2025-10-13 18:01:09,798 [wrapper] pilotpid: 3451395
[2025-10-13 20:01:09] 2025-10-13 18:01:09,800 [wrapper] Pilot exit status: 0
[2025-10-13 20:01:09] 2025-10-13 18:01:09,808 [wrapper] pandaids: 6842334946
[2025-10-13 20:01:09] 2025-10-13 18:01:09,826 [wrapper] cleanup supervisor_pilot 3470565 3451396
[2025-10-13 20:01:09] 2025-10-13 18:01:09,829 [wrapper] Test setup, not cleaning
[2025-10-13 20:01:09] 2025-10-13 18:01:09,831 [wrapper] apfmon messages muted
[2025-10-13 20:01:09] 2025-10-13 18:01:09,834 [wrapper] ==== wrapper stdout END ====
[2025-10-13 20:01:09] 2025-10-13 18:01:09,837 [wrapper] ==== wrapper stderr END ====
[2025-10-13 20:01:09]  *** Error codes and diagnostics ***
[2025-10-13 20:01:09]     "exeErrorCode": 0,
[2025-10-13 20:01:09]     "exeErrorDiag": "",
[2025-10-13 20:01:09]     "pilotErrorCode": 0,
[2025-10-13 20:01:09]     "pilotErrorDiag": "",
[2025-10-13 20:01:09]  *** Listing of results directory ***
[2025-10-13 20:01:09] total 409996
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc    557409 Oct 13 05:15 pilot3.tar.gz
[2025-10-13 20:01:09] -rwx------ 1 boinc boinc     36292 Oct 13 05:41 runpilot2-wrapper.sh
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc      5112 Oct 13 05:41 queuedata.json
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc       100 Oct 13 18:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 20:01:09] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 18:39 run_atlas
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc       105 Oct 13 18:39 job.xml
[2025-10-13 20:01:09] -rw-r--r-- 2 boinc boinc 219371237 Oct 13 18:39 EVNT.46676267._004353.pool.root.1
[2025-10-13 20:01:09] -rw-r--r-- 2 boinc boinc    569689 Oct 13 18:39 input.tar.gz
[2025-10-13 20:01:09] -rw-r--r-- 2 boinc boinc     15120 Oct 13 18:39 start_atlas.sh
[2025-10-13 20:01:09] drwxrwx--x 2 boinc boinc      4096 Oct 13 18:39 shared
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc         0 Oct 13 18:39 boinc_setup_complete
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc      6448 Oct 13 18:39 init_data.xml
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc         0 Oct 13 18:39 boinc_lockfile
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc      2550 Oct 13 18:39 pandaJob.out
[2025-10-13 20:01:09] -rw------- 1 boinc boinc    972783 Oct 13 18:39 agis_schedconf.cvmfs.json
[2025-10-13 20:01:09] -rw------- 1 boinc boinc   1560580 Oct 13 18:39 agis_ddmendpoints.agis.ALL.json
[2025-10-13 20:01:09] drwx------ 5 boinc boinc      4096 Oct 13 18:39 pilot3
[2025-10-13 20:01:09] -rw------- 1 boinc boinc 194640921 Oct 13 19:59 HITS.46676269._096092.pool.root.1
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc       529 Oct 13 20:00 boinc_task_state.xml
[2025-10-13 20:01:09] -rw------- 1 boinc boinc      1014 Oct 13 20:00 memory_monitor_summary.json
[2025-10-13 20:01:09] -rw------- 1 boinc boinc    255657 Oct 13 20:00 log.46676269._096092.job.log.tgz.1
[2025-10-13 20:01:09] -rw------- 1 boinc boinc        95 Oct 13 20:00 pilot_heartbeat.json
[2025-10-13 20:01:09] -rw------- 1 boinc boinc      7755 Oct 13 20:00 heartbeat.json
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc      8192 Oct 13 20:01 boinc_mmap_file
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc        27 Oct 13 20:01 wrapper_checkpoint.txt
[2025-10-13 20:01:09] -rw------- 1 boinc boinc      4752 Oct 13 20:01 pilotlog.txt
[2025-10-13 20:01:09] -rw------- 1 boinc boinc    711158 Oct 13 20:01 log.46676269._096092.job.log.1
[2025-10-13 20:01:09] -rw------- 1 boinc boinc       357 Oct 13 20:01 output.list
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc       620 Oct 13 20:01 runtime_log
[2025-10-13 20:01:09] -rw------- 1 boinc boinc    983040 Oct 13 20:01 result.tar.gz
[2025-10-13 20:01:09] -rw------- 1 boinc boinc       661 Oct 13 20:01 v48KDmCcOS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmqfVMDmv0OwKn.diag
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc      8792 Oct 13 20:01 runtime_log.err
[2025-10-13 20:01:09] -rw-r--r-- 1 boinc boinc     12645 Oct 13 20:01 stderr.txt
[2025-10-13 20:01:09] HITS file was successfully produced:
[2025-10-13 20:01:09] -rw------- 1 boinc boinc 194640921 Oct 13 19:59 shared/HITS.pool.root.1
[2025-10-13 20:01:09]  *** Contents of shared directory: ***
[2025-10-13 20:01:09] total 405856
[2025-10-13 20:01:09] -rw-r--r-- 2 boinc boinc 219371237 Oct 13 18:39 ATLAS.root_0
[2025-10-13 20:01:09] -rw-r--r-- 2 boinc boinc    569689 Oct 13 18:39 input.tar.gz
[2025-10-13 20:01:09] -rw-r--r-- 2 boinc boinc     15120 Oct 13 18:39 start_atlas.sh
[2025-10-13 20:01:09] -rw------- 1 boinc boinc 194640921 Oct 13 19:59 HITS.pool.root.1
[2025-10-13 20:01:09] -rw------- 1 boinc boinc    983040 Oct 13 20:01 result.tar.gz
20:01:10 (3447675): run_atlas exited; CPU time 13807.584517
20:01:10 (3447675): called boinc_finish(0)

</stderr_txt>
]]>

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