Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:16:01 (255868): wrapper (7.7.26015): starting
05:16:01 (255868): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 05:16:01] Arguments: --nthreads 9
[2025-10-13 05:16:01] Threads: 9
[2025-10-13 05:16:01] Checking for CVMFS
[2025-10-13 05:16:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:16:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:16:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:16:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:16:02] 2.13.2.0 128665 118537 219832 151654 0 445 21094484 39288833 7036 16776704 0 78321853 99.746 53248262 36398 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 05:16:02] CVMFS is ok
[2025-10-13 05:16:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:16:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:16:02] Further information can be found at the LHC@home message board.
[2025-10-13 05:16:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:16:02] Checking for apptainer binary...
[2025-10-13 05:16:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:16:02] Running /usr/bin/apptainer --version
[2025-10-13 05:16:02] apptainer version 1.4.3-1.el9
[2025-10-13 05:16:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:16:02] c-210-2.aglt2.org
[2025-10-13 05:16:02] apptainer works
[2025-10-13 05:16:02] Set ATHENA_PROC_NUMBER=9
[2025-10-13 05:16:02] Set ATHENA_CORE_NUMBER=9
[2025-10-13 05:16:02] Starting ATLAS job with PandaID=6840851799
[2025-10-13 05:16:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:53:15]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:53:15] 2025-10-13 16:52:08,155 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 12:53:15] 2025-10-13 16:52:08,155 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 12:53:15] 2025-10-13 16:52:08,155 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 12:53:15] 2025-10-13 16:52:08,165 | INFO     | fitting pss+swap vs Time
[2025-10-13 12:53:15] 2025-10-13 16:52:08,166 | INFO     | sum of square deviations: 27885461148.390625
[2025-10-13 12:53:15] 2025-10-13 16:52:08,172 | INFO     | sum of deviations: -39096320031.546875
[2025-10-13 12:53:15] 2025-10-13 16:52:08,172 | INFO     | mean x: 1760360649.765625
[2025-10-13 12:53:15] 2025-10-13 16:52:08,172 | INFO     | mean y: 2566403.328125
[2025-10-13 12:53:15] 2025-10-13 16:52:08,172 | INFO     | -- intersect: 2470649070.7776017
[2025-10-13 12:53:15] 2025-10-13 16:52:08,172 | INFO     | intersect: 2470649070.7776017
[2025-10-13 12:53:15] 2025-10-13 16:52:08,173 | INFO     | chi2: 2.2106066287134003
[2025-10-13 12:53:15] 2025-10-13 16:52:08,174 | INFO     | sum of square deviations: 26962573400.59136
[2025-10-13 12:53:15] 2025-10-13 16:52:08,179 | INFO     | sum of deviations: -10387265844.923254
[2025-10-13 12:53:15] 2025-10-13 16:52:08,180 | INFO     | mean x: 1760360497.2866817
[2025-10-13 12:53:15] 2025-10-13 16:52:08,180 | INFO     | mean y: 2571103.48758465
[2025-10-13 12:53:15] 2025-10-13 16:52:08,180 | INFO     | -- intersect: 680745704.8710349
[2025-10-13 12:53:15] 2025-10-13 16:52:08,180 | INFO     | intersect: 680745704.8710349
[2025-10-13 12:53:15] 2025-10-13 16:52:08,181 | INFO     | chi2: 1.5204325413372148
[2025-10-13 12:53:15] 2025-10-13 16:52:08,181 | INFO     | current chi2=1.5204325413372148 (change=31.221026772089033 %)
[2025-10-13 12:53:15] 2025-10-13 16:52:08,182 | INFO     | sum of square deviations: 26060208895.7191
[2025-10-13 12:53:15] 2025-10-13 16:52:08,187 | INFO     | sum of deviations: -10996989840.513687
[2025-10-13 12:53:15] 2025-10-13 16:52:08,187 | INFO     | mean x: 1760360344.80137
[2025-10-13 12:53:15] 2025-10-13 16:52:08,187 | INFO     | mean y: 2571000.52283105
[2025-10-13 12:53:15] 2025-10-13 16:52:08,187 | INFO     | -- intersect: 745414809.0620587
[2025-10-13 12:53:15] 2025-10-13 16:52:08,188 | INFO     | intersect: 745414809.0620587
[2025-10-13 12:53:15] 2025-10-13 16:52:08,188 | INFO     | chi2: 1.5198987560737958
[2025-10-13 12:53:15] 2025-10-13 16:52:08,189 | INFO     | current chi2=1.5198987560737958 (change=0.03510746112745068 %)
[2025-10-13 12:53:15] 2025-10-13 16:52:08,189 | INFO     | right removable region: 437
[2025-10-13 12:53:15] 2025-10-13 16:52:08,189 | INFO     | sum of square deviations: 26962008657.43571
[2025-10-13 12:53:15] 2025-10-13 16:52:08,195 | INFO     | sum of deviations: -101628794488.07669
[2025-10-13 12:53:15] 2025-10-13 16:52:08,195 | INFO     | mean x: 1760360802.2911963
[2025-10-13 12:53:15] 2025-10-13 16:52:08,195 | INFO     | mean y: 2576669.0316027086
[2025-10-13 12:53:15] 2025-10-13 16:52:08,196 | INFO     | -- intersect: 6637963092.719995
[2025-10-13 12:53:15] 2025-10-13 16:52:08,196 | INFO     | intersect: 6637963092.719995
[2025-10-13 12:53:15] 2025-10-13 16:52:08,196 | INFO     | chi2: 0.8746436464837427
[2025-10-13 12:53:15] 2025-10-13 16:52:08,197 | INFO     | current chi2=0.8746436464837427 (change=60.434224926178025 %)
[2025-10-13 12:53:15] 2025-10-13 16:52:08,197 | INFO     | sum of square deviations: 26059161203.388035
[2025-10-13 12:53:15] 2025-10-13 16:52:08,203 | INFO     | sum of deviations: -100621468081.77179
[2025-10-13 12:53:15] 2025-10-13 16:52:08,203 | INFO     | mean x: 1760360954.8173516
[2025-10-13 12:53:15] 2025-10-13 16:52:08,203 | INFO     | mean y: 2576495.127853881
[2025-10-13 12:53:15] 2025-10-13 16:52:08,203 | INFO     | -- intersect: 6799806162.079767
[2025-10-13 12:53:15] 2025-10-13 16:52:08,203 | INFO     | intersect: 6799806162.079767
[2025-10-13 12:53:15] 2025-10-13 16:52:08,204 | INFO     | chi2: 0.866329518611518
[2025-10-13 12:53:15] 2025-10-13 16:52:08,204 | INFO     | current chi2=0.866329518611518 (change=0.9505731740748748 %)
[2025-10-13 12:53:15] 2025-10-13 16:52:08,204 | INFO     | left removable region: 20
[2025-10-13 12:53:15] 2025-10-13 16:52:08,205 | INFO     | sum of square deviations: 22488140065.39573
[2025-10-13 12:53:15] 2025-10-13 16:52:08,210 | INFO     | sum of deviations: -51039099746.49637
[2025-10-13 12:53:15] 2025-10-13 16:52:08,210 | INFO     | mean x: 1760360924.4172661
[2025-10-13 12:53:15] 2025-10-13 16:52:08,211 | INFO     | mean y: 2577633.6522781774
[2025-10-13 12:53:15] 2025-10-13 16:52:08,211 | INFO     | -- intersect: 3997894122.694536
[2025-10-13 12:53:15] 2025-10-13 16:52:08,211 | INFO     | intersect: 3997894122.694536
[2025-10-13 12:53:15] 2025-10-13 16:52:08,212 | INFO     | chi2: 0.14318190075243256
[2025-10-13 12:53:15] 2025-10-13 16:52:08,212 | INFO     | -- intersect: 3997894122.694536
[2025-10-13 12:53:15] 2025-10-13 16:52:08,212 | INFO     | current memory leak: -2.27 B/s (using 417 data points, chi2=0.14)
[2025-10-13 12:53:15] 2025-10-13 16:52:08,213 | INFO     | could have reported an average CPU frequency of 2602 MHz (18 samples)
[2025-10-13 12:53:15] 2025-10-13 16:52:08,213 | INFO     | ..............................
[2025-10-13 12:53:15] 2025-10-13 16:52:08,213 | INFO     | . Timing measurements:
[2025-10-13 12:53:15] 2025-10-13 16:52:08,213 | INFO     | . get job = 0 s
[2025-10-13 12:53:15] 2025-10-13 16:52:08,214 | INFO     | . initial setup = 3 s
[2025-10-13 12:53:15] 2025-10-13 16:52:08,214 | INFO     | . payload setup = 12 s
[2025-10-13 12:53:15] 2025-10-13 16:52:08,214 | INFO     | . stage-in = 0 s
[2025-10-13 12:53:15] 2025-10-13 16:52:08,214 | INFO     | . payload execution = 27301 s
[2025-10-13 12:53:15] 2025-10-13 16:52:08,214 | INFO     | . stage-out = 3 s
[2025-10-13 12:53:15] 2025-10-13 16:52:08,214 | INFO     | . log creation = 0 s
[2025-10-13 12:53:15] 2025-10-13 16:52:08,214 | INFO     | ..............................
[2025-10-13 12:53:15] 2025-10-13 16:52:08,392 | INFO     | 
[2025-10-13 12:53:15] 2025-10-13 16:52:08,392 | INFO     | job summary report
[2025-10-13 12:53:15] 2025-10-13 16:52:08,392 | INFO     | --------------------------------------------------
[2025-10-13 12:53:15] 2025-10-13 16:52:08,392 | INFO     | PanDA job id: 6840851799
[2025-10-13 12:53:15] 2025-10-13 16:52:08,392 | INFO     | task id: 46676269
[2025-10-13 12:53:15] 2025-10-13 16:52:08,392 | INFO     | errors: (none)
[2025-10-13 12:53:15] 2025-10-13 16:52:08,393 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 12:53:15] 2025-10-13 16:52:08,393 | INFO     | pilot state: finished 
[2025-10-13 12:53:15] 2025-10-13 16:52:08,393 | INFO     | transexitcode: 0
[2025-10-13 12:53:15] 2025-10-13 16:52:08,393 | INFO     | exeerrorcode: 0
[2025-10-13 12:53:15] 2025-10-13 16:52:08,393 | INFO     | exeerrordiag: 
[2025-10-13 12:53:15] 2025-10-13 16:52:08,393 | INFO     | exitcode: 0
[2025-10-13 12:53:15] 2025-10-13 16:52:08,393 | INFO     | exitmsg: OK
[2025-10-13 12:53:15] 2025-10-13 16:52:08,393 | INFO     | cpuconsumptiontime: 53108 s
[2025-10-13 12:53:15] 2025-10-13 16:52:08,393 | INFO     | nevents: 400
[2025-10-13 12:53:15] 2025-10-13 16:52:08,394 | INFO     | neventsw: 0
[2025-10-13 12:53:15] 2025-10-13 16:52:08,394 | INFO     | pid: 265966
[2025-10-13 12:53:15] 2025-10-13 16:52:08,394 | INFO     | pgrp: 265966
[2025-10-13 12:53:15] 2025-10-13 16:52:08,394 | INFO     | corecount: 9
[2025-10-13 12:53:15] 2025-10-13 16:52:08,394 | INFO     | event service: False
[2025-10-13 12:53:15] 2025-10-13 16:52:08,394 | INFO     | sizes: {0: 2348680, 1: 2348879, 6: 2349141, 12: 2349169, 27318: 2385660, 27322: 2394658, 27323: 2394870, 27336: 2395064}
[2025-10-13 12:53:15] 2025-10-13 16:52:08,394 | INFO     | --------------------------------------------------
[2025-10-13 12:53:15] 2025-10-13 16:52:08,394 | INFO     | 
[2025-10-13 12:53:15] 2025-10-13 16:52:08,395 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 12:53:15] 2025-10-13 16:52:08,419 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,419 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,420 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,420 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,420 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,420 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,420 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,420 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,420 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,420 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,421 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,421 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,421 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,421 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,421 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,421 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,421 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,421 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:53:15] 2025-10-13 16:52:08,422 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,422 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:53:15] 2025-10-13 16:52:08,422 | INFO     | job 6840851799 has completed (purged errors)
[2025-10-13 12:53:15] 2025-10-13 16:52:08,422 | INFO     | overall cleanup function is called
[2025-10-13 12:53:15] 2025-10-13 16:52:09,431 | INFO     | --- collectZombieJob: --- 10, [265966]
[2025-10-13 12:53:15] 2025-10-13 16:52:09,431 | INFO     | zombie collector waiting for pid 265966
[2025-10-13 12:53:15] 2025-10-13 16:52:09,431 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:53:15] 2025-10-13 16:52:09,431 | INFO     | collected zombie processes
[2025-10-13 12:53:15] 2025-10-13 16:52:09,431 | INFO     | will attempt to kill all subprocesses of pid=265966
[2025-10-13 12:53:15] 2025-10-13 16:52:09,934 | INFO     | process IDs to be killed: [265966] (in reverse order)
[2025-10-13 12:53:15] 2025-10-13 16:52:10,056 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:53:15] 2025-10-13 16:52:10,057 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:53:15] 2025-10-13 16:52:10,070 | INFO     | did not find any defunct processes belonging to 265966
[2025-10-13 12:53:15] 2025-10-13 16:52:10,087 | INFO     | did not find any defunct processes belonging to 265966
[2025-10-13 12:53:15] 2025-10-13 16:52:10,087 | INFO     | ready for new job
[2025-10-13 12:53:15] 2025-10-13 16:52:10,088 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:53:15] 2025-10-13 16:52:10,095 | INFO     | ***************************************
[2025-10-13 12:53:15] 2025-10-13 16:52:10,095 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:53:15] 2025-10-13 16:52:10,095 | INFO     | ***************************************
[2025-10-13 12:53:15] 2025-10-13 16:52:10,095 | INFO     | 
[2025-10-13 12:53:15] 2025-10-13 16:52:10,100 | INFO     | architecture information:
[2025-10-13 12:53:15] 2025-10-13 16:52:10,131 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:53:15] 2025-10-13 16:52:10,184 | INFO     | cat /etc/os-release:
[2025-10-13 12:53:15] NAME="CentOS Linux"
[2025-10-13 12:53:15] VERSION="7 (Core)"
[2025-10-13 12:53:15] ID="centos"
[2025-10-13 12:53:15] ID_LIKE="rhel fedora"
[2025-10-13 12:53:15] VERSION_ID="7"
[2025-10-13 12:53:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:53:15] ANSI_COLOR="0;31"
[2025-10-13 12:53:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:53:15] HOME_URL="https://www.centos.org/"
[2025-10-13 12:53:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:53:15] 
[2025-10-13 12:53:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:53:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:53:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:53:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:53:15] 
[2025-10-13 12:53:15] 2025-10-13 16:52:10,184 | INFO     | ***************************************
[2025-10-13 12:53:15] 2025-10-13 16:52:10,688 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 12:53:15] 2025-10-13 16:52:10,744 | INFO     | sufficient remaining disk space (53214183424 B)
[2025-10-13 12:53:15] 2025-10-13 16:52:10,745 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:53:15] 2025-10-13 16:52:10,745 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:53:15] 2025-10-13 16:52:10,745 | INFO     | update_server=False
[2025-10-13 12:53:15] 2025-10-13 16:52:10,745 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:53:15] 2025-10-13 16:52:10,746 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:53:15] 2025-10-13 16:52:10,766 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:53:15] 2025-10-13 16:52:10,766 | INFO     | aborting loop
[2025-10-13 12:53:15] 2025-10-13 16:52:11,383 | INFO     | all data control threads have been joined
[2025-10-13 12:53:15] 2025-10-13 16:52:11,751 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:11,772 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:11,773 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:11,790 | INFO     | [job] validate thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:11,844 | INFO     | all job control threads have been joined
[2025-10-13 12:53:15] 2025-10-13 16:52:11,877 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:11,914 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:12,108 | INFO     | all payload control threads have been joined
[2025-10-13 12:53:15] 2025-10-13 16:52:12,229 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:12,244 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:53:15] 2025-10-13 16:52:12,310 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:12,389 | INFO     | [data] control thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:12,850 | INFO     | [job] control thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:12,907 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:12,993 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:13,114 | INFO     | [payload] control thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:13,407 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:53:15] 2025-10-13 16:52:14,251 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:14,419 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:14,755 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:53:15] 2025-10-13 16:52:40,825 | INFO     | PID=259601 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 12:53:15] 2025-10-13 16:52:40,826 | INFO     | .. there are 7 such processes running
[2025-10-13 12:53:15] 2025-10-13 16:52:40,826 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:53:15] 2025-10-13 16:52:40,826 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:53:15] 2025-10-13 16:52:40,826 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:53:15] 2025-10-13 16:53:07,174 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:53:15] 2025-10-13 16:53:09,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139866957190976)>', '<ExcThread(monitor, started 139866448836352)>']
[2025-10-13 12:53:15] 2025-10-13 16:53:10,012 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:53:15] 2025-10-13 16:53:10,012 | INFO     | [monitor] control thread has ended
[2025-10-13 12:53:15] 2025-10-13 16:53:14,199 | INFO     | all workflow threads have been joined
[2025-10-13 12:53:15] 2025-10-13 16:53:14,199 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:53:15] 2025-10-13 16:53:14,199 | INFO     | traces error code: 0
[2025-10-13 12:53:15] 2025-10-13 16:53:14,200 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:53:15] 2025-10-13 16:53:14,522 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:53:15] 2025-10-13 16:53:14,544 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:53:15] 2025-10-13 16:53:14,547 [wrapper] pilotpid: 259601
[2025-10-13 12:53:15] 2025-10-13 16:53:14,550 [wrapper] Pilot exit status: 0
[2025-10-13 12:53:15] 2025-10-13 16:53:14,606 [wrapper] pandaids: 6840851799
[2025-10-13 12:53:15] 2025-10-13 16:53:14,757 [wrapper] cleanup supervisor_pilot  961531 259602
[2025-10-13 12:53:15] 2025-10-13 16:53:14,761 [wrapper] Test setup, not cleaning
[2025-10-13 12:53:15] 2025-10-13 16:53:14,766 [wrapper] apfmon messages muted
[2025-10-13 12:53:15] 2025-10-13 16:53:14,769 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:53:15] 2025-10-13 16:53:14,773 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:53:15]  *** Error codes and diagnostics ***
[2025-10-13 12:53:15]     "exeErrorCode": 0,
[2025-10-13 12:53:15]     "exeErrorDiag": "",
[2025-10-13 12:53:15]     "pilotErrorCode": 0,
[2025-10-13 12:53:15]     "pilotErrorDiag": "",
[2025-10-13 12:53:15]  *** Listing of results directory ***
[2025-10-13 12:53:15] total 408240
[2025-10-13 12:53:15] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 12:53:15] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 18:18 queuedata.json
[2025-10-13 12:53:15] -rwx------. 1 boincer umatlas     36292 Oct 12 18:19 runpilot2-wrapper.sh
[2025-10-13 12:53:15] -rw-r--r--. 1 boincer umatlas       100 Oct 13 05:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:53:15] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 05:16 run_atlas
[2025-10-13 12:53:15] -rw-r--r--. 1 boincer umatlas       105 Oct 13 05:16 job.xml
[2025-10-13 12:53:15] -rw-r--r--. 2 boincer umatlas 218215455 Oct 13 05:16 EVNT.46676267._004611.pool.root.1
[2025-10-13 12:53:15] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 05:16 start_atlas.sh
[2025-10-13 12:53:15] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 05:16 shared
[2025-10-13 12:53:15] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 05:16 input.tar.gz
[2025-10-13 12:53:15] -rw-r--r--. 1 boincer umatlas         0 Oct 13 05:16 boinc_lockfile
[2025-10-13 12:53:15] -rw-r--r--. 1 boincer umatlas      2547 Oct 13 05:16 pandaJob.out
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas    972857 Oct 13 05:16 agis_schedconf.cvmfs.json
[2025-10-13 12:53:15] drwx------. 5 boincer umatlas      4096 Oct 13 05:16 pilot3
[2025-10-13 12:53:15] -rw-r--r--. 1 boincer umatlas      6658 Oct 13 12:48 init_data.xml
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas 188032176 Oct 13 12:51 HITS.46676269._090978.pool.root.1
[2025-10-13 12:53:15] -rw-r--r--. 1 boincer umatlas       531 Oct 13 12:51 boinc_task_state.xml
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas      1053 Oct 13 12:51 memory_monitor_summary.json
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas   1560580 Oct 13 12:51 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas    611728 Oct 13 12:51 log.46676269._090978.job.log.tgz.1
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas        95 Oct 13 12:52 pilot_heartbeat.json
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas      7832 Oct 13 12:52 heartbeat.json
[2025-10-13 12:53:15] -rw-r--r--. 1 boincer umatlas        28 Oct 13 12:52 wrapper_checkpoint.txt
[2025-10-13 12:53:15] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 12:52 boinc_mmap_file
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas      4822 Oct 13 12:53 pilotlog.txt
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas   3332103 Oct 13 12:53 log.46676269._090978.job.log.1
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas       357 Oct 13 12:53 output.list
[2025-10-13 12:53:15] -rw-r--r--. 1 boincer umatlas       620 Oct 13 12:53 runtime_log
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas   3962880 Oct 13 12:53 result.tar.gz
[2025-10-13 12:53:15] -rw-r--r--. 1 boincer umatlas      8699 Oct 13 12:53 runtime_log.err
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas       660 Oct 13 12:53 esGLDmkaJS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmt9UMDmow84Pm.diag
[2025-10-13 12:53:15] -rw-r--r--. 1 boincer umatlas     20962 Oct 13 12:53 stderr.txt
[2025-10-13 12:53:15] HITS file was successfully produced:
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas 188032176 Oct 13 12:51 shared/HITS.pool.root.1
[2025-10-13 12:53:15]  *** Contents of shared directory: ***
[2025-10-13 12:53:15] total 401184
[2025-10-13 12:53:15] -rw-r--r--. 2 boincer umatlas 218215455 Oct 13 05:16 ATLAS.root_0
[2025-10-13 12:53:15] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 05:16 start_atlas.sh
[2025-10-13 12:53:15] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 05:16 input.tar.gz
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas 188032176 Oct 13 12:51 HITS.pool.root.1
[2025-10-13 12:53:15] -rw-------. 1 boincer umatlas   3962880 Oct 13 12:53 result.tar.gz
12:53:16 (255868): run_atlas exited; CPU time 53794.305776
12:53:16 (255868): called boinc_finish(0)

</stderr_txt>
]]>

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