Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:57:13 (1314018): wrapper (7.7.26015): starting
03:57:13 (1314018): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 03:57:13] Arguments: --nthreads 8
[2025-10-13 03:57:13] Threads: 8
[2025-10-13 03:57:13] Checking for CVMFS
[2025-10-13 03:57:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:57:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:57:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:57:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:57:18] 2.13.2.0 2038924 69737 114220 151653 1 317 21862126 32503808 45077 16776704 0 459697323 99.751 311919457 34579 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 03:57:18] CVMFS is ok
[2025-10-13 03:57:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:57:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:57:18] Further information can be found at the LHC@home message board.
[2025-10-13 03:57:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:57:18] Checking for apptainer binary...
[2025-10-13 03:57:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:57:18] Running /usr/bin/apptainer --version
[2025-10-13 03:57:18] apptainer version 1.4.3-1.el9
[2025-10-13 03:57:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:57:19] c8-7-1.aglt2.org
[2025-10-13 03:57:19] apptainer works
[2025-10-13 03:57:19] Set ATHENA_PROC_NUMBER=8
[2025-10-13 03:57:19] Set ATHENA_CORE_NUMBER=8
[2025-10-13 03:57:20] Starting ATLAS job with PandaID=6841069122
[2025-10-13 03:57:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:00:13 (1314018): BOINC client no longer exists - exiting
05:00:13 (1314018): timer handler: client dead, exiting
05:10:00 (2020001): wrapper (7.7.26015): starting
05:10:00 (2020001): wrapper: running run_atlas (--nthreads 10)
[2025-10-13 05:10:00] Arguments: --nthreads 10
[2025-10-13 05:10:00] Threads: 10
[2025-10-13 05:10:00] This job has been restarted, cleaning up previous attempt
[2025-10-13 05:10:00] Checking for CVMFS
[2025-10-13 05:10:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:10:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:10:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:10:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:10:01] 2.13.2.0 2038924 69810 137752 151654 0 586 23232905 32503809 38020 16776704 0 460133205 99.751 311982597 34579 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 05:10:01] CVMFS is ok
[2025-10-13 05:10:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:10:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:10:01] Further information can be found at the LHC@home message board.
[2025-10-13 05:10:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:10:01] Checking for apptainer binary...
[2025-10-13 05:10:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:10:01] Running /usr/bin/apptainer --version
[2025-10-13 05:10:01] apptainer version 1.4.3-1.el9
[2025-10-13 05:10:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:10:01] c8-7-1.aglt2.org
[2025-10-13 05:10:01] apptainer works
[2025-10-13 05:10:01] Set ATHENA_PROC_NUMBER=10
[2025-10-13 05:10:01] Set ATHENA_CORE_NUMBER=10
[2025-10-13 05:10:01] Starting ATLAS job with PandaID=6841069122
[2025-10-13 05:10:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:18:09]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:18:09] 2025-10-13 11:17:08,634 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 07:18:09] 2025-10-13 11:17:08,634 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 07:18:09] 2025-10-13 11:17:08,635 | INFO     | fitting pss+swap vs Time
[2025-10-13 07:18:09] 2025-10-13 11:17:08,636 | INFO     | sum of square deviations: 591147776.1935494
[2025-10-13 07:18:09] 2025-10-13 11:17:08,636 | INFO     | sum of deviations: 8450143026.58065
[2025-10-13 07:18:09] 2025-10-13 11:17:08,636 | INFO     | mean x: 1760350402.580645
[2025-10-13 07:18:09] 2025-10-13 11:17:08,636 | INFO     | mean y: 2522479.2419354836
[2025-10-13 07:18:09] 2025-10-13 11:17:08,636 | INFO     | -- intersect: -25160750187.514984
[2025-10-13 07:18:09] 2025-10-13 11:17:08,636 | INFO     | intersect: -25160750187.514984
[2025-10-13 07:18:09] 2025-10-13 11:17:08,636 | INFO     | chi2: 1.966118461414594
[2025-10-13 07:18:09] 2025-10-13 11:17:08,636 | INFO     | sum of square deviations: 522479771.1596631
[2025-10-13 07:18:09] 2025-10-13 11:17:08,649 | INFO     | sum of deviations: 16261419303.18488
[2025-10-13 07:18:09] 2025-10-13 11:17:08,649 | INFO     | mean x: 1760350250.0840337
[2025-10-13 07:18:09] 2025-10-13 11:17:08,649 | INFO     | mean y: 2539208.781512605
[2025-10-13 07:18:09] 2025-10-13 11:17:08,649 | INFO     | -- intersect: -54785789674.35751
[2025-10-13 07:18:09] 2025-10-13 11:17:08,649 | INFO     | intersect: -54785789674.35751
[2025-10-13 07:18:09] 2025-10-13 11:17:08,649 | INFO     | chi2: 1.1724432573231085
[2025-10-13 07:18:09] 2025-10-13 11:17:08,649 | INFO     | current chi2=1.1724432573231085 (change=40.36761872020914 %)
[2025-10-13 07:18:09] 2025-10-13 11:17:08,649 | INFO     | sum of square deviations: 459346753.6228073
[2025-10-13 07:18:09] 2025-10-13 11:17:08,650 | INFO     | sum of deviations: 15470301816.131573
[2025-10-13 07:18:09] 2025-10-13 11:17:08,650 | INFO     | mean x: 1760350097.5877192
[2025-10-13 07:18:09] 2025-10-13 11:17:08,650 | INFO     | mean y: 2537297.236842105
[2025-10-13 07:18:09] 2025-10-13 11:17:08,650 | INFO     | -- intersect: -59284149931.865005
[2025-10-13 07:18:09] 2025-10-13 11:17:08,650 | INFO     | intersect: -59284149931.865005
[2025-10-13 07:18:09] 2025-10-13 11:17:08,650 | INFO     | chi2: 1.1736744574517035
[2025-10-13 07:18:09] 2025-10-13 11:17:08,650 | INFO     | current chi2=1.1736744574517035 (change=-0.10501148954586126 %)
[2025-10-13 07:18:09] 2025-10-13 11:17:08,650 | INFO     | right removable region: 113
[2025-10-13 07:18:09] 2025-10-13 11:17:08,650 | INFO     | sum of square deviations: 522473671.1596631
[2025-10-13 07:18:09] 2025-10-13 11:17:08,650 | INFO     | sum of deviations: -6245797284.621848
[2025-10-13 07:18:09] 2025-10-13 11:17:08,651 | INFO     | mean x: 1760350555.0840337
[2025-10-13 07:18:09] 2025-10-13 11:17:08,651 | INFO     | mean y: 2554353.462184874
[2025-10-13 07:18:09] 2025-10-13 11:17:08,651 | INFO     | -- intersect: 21046280236.381393
[2025-10-13 07:18:09] 2025-10-13 11:17:08,651 | INFO     | intersect: 21046280236.381393
[2025-10-13 07:18:09] 2025-10-13 11:17:08,651 | INFO     | chi2: 0.8220809808237532
[2025-10-13 07:18:09] 2025-10-13 11:17:08,651 | INFO     | current chi2=0.8220809808237532 (change=58.18761702525911 %)
[2025-10-13 07:18:09] 2025-10-13 11:17:08,651 | INFO     | sum of square deviations: 459334553.6228073
[2025-10-13 07:18:09] 2025-10-13 11:17:08,674 | INFO     | sum of deviations: -6729581091.710526
[2025-10-13 07:18:09] 2025-10-13 11:17:08,674 | INFO     | mean x: 1760350707.5877192
[2025-10-13 07:18:09] 2025-10-13 11:17:08,674 | INFO     | mean y: 2555509.9210526315
[2025-10-13 07:18:09] 2025-10-13 11:17:08,674 | INFO     | -- intersect: 25792957610.368107
[2025-10-13 07:18:09] 2025-10-13 11:17:08,674 | INFO     | intersect: 25792957610.368107
[2025-10-13 07:18:09] 2025-10-13 11:17:08,675 | INFO     | chi2: 0.8217460007385576
[2025-10-13 07:18:09] 2025-10-13 11:17:08,675 | INFO     | current chi2=0.8217460007385576 (change=0.040747820836330696 %)
[2025-10-13 07:18:09] 2025-10-13 11:17:08,675 | INFO     | left removable region: 20
[2025-10-13 07:18:09] 2025-10-13 11:17:08,675 | INFO     | sum of square deviations: 249363616.1290326
[2025-10-13 07:18:09] 2025-10-13 11:17:08,675 | INFO     | sum of deviations: 547295591.1935484
[2025-10-13 07:18:09] 2025-10-13 11:17:08,675 | INFO     | mean x: 1760350677.096774
[2025-10-13 07:18:09] 2025-10-13 11:17:08,675 | INFO     | mean y: 2576056.9784946237
[2025-10-13 07:18:09] 2025-10-13 11:17:08,675 | INFO     | -- intersect: -3860987439.11356
[2025-10-13 07:18:09] 2025-10-13 11:17:08,675 | INFO     | intersect: -3860987439.11356
[2025-10-13 07:18:09] 2025-10-13 11:17:08,675 | INFO     | chi2: 4.623582300221951e-05
[2025-10-13 07:18:09] 2025-10-13 11:17:08,675 | INFO     | -- intersect: -3860987439.11356
[2025-10-13 07:18:09] 2025-10-13 11:17:08,676 | INFO     | current memory leak: 2.19 B/s (using 93 data points, chi2=0.00)
[2025-10-13 07:18:09] 2025-10-13 11:17:08,676 | INFO     | could have reported an average CPU frequency of 3733 MHz (8 samples)
[2025-10-13 07:18:09] 2025-10-13 11:17:08,676 | INFO     | ..............................
[2025-10-13 07:18:09] 2025-10-13 11:17:08,676 | INFO     | . Timing measurements:
[2025-10-13 07:18:09] 2025-10-13 11:17:08,676 | INFO     | . get job = 0 s
[2025-10-13 07:18:09] 2025-10-13 11:17:08,676 | INFO     | . initial setup = 1 s
[2025-10-13 07:18:09] 2025-10-13 11:17:08,676 | INFO     | . payload setup = 8 s
[2025-10-13 07:18:09] 2025-10-13 11:17:08,676 | INFO     | . stage-in = 0 s
[2025-10-13 07:18:09] 2025-10-13 11:17:08,676 | INFO     | . payload execution = 7555 s
[2025-10-13 07:18:09] 2025-10-13 11:17:08,676 | INFO     | . stage-out = 3 s
[2025-10-13 07:18:09] 2025-10-13 11:17:08,676 | INFO     | . log creation = 0 s
[2025-10-13 07:18:09] 2025-10-13 11:17:08,676 | INFO     | ..............................
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | 
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | job summary report
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | --------------------------------------------------
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | PanDA job id: 6841069122
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | task id: 46676269
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | errors: (none)
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | pilot state: finished 
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | transexitcode: 0
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | exeerrorcode: 0
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | exeerrordiag: 
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | exitcode: 0
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | exitmsg: OK
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | cpuconsumptiontime: 25819 s
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | nevents: 400
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | neventsw: 0
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | pid: 2087718
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | pgrp: 2087718
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | corecount: 10
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | event service: False
[2025-10-13 07:18:09] 2025-10-13 11:17:08,924 | INFO     | sizes: {0: 2348857, 7: 2349119, 11: 2349147, 7567: 2376762, 7571: 2385760, 7574: 2385816, 7597: 2386138}
[2025-10-13 07:18:09] 2025-10-13 11:17:08,925 | INFO     | --------------------------------------------------
[2025-10-13 07:18:09] 2025-10-13 11:17:08,925 | INFO     | 
[2025-10-13 07:18:09] 2025-10-13 11:17:08,925 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 07:18:09] 2025-10-13 11:17:08,936 | INFO     | time since job start (7614s) is within the limit (172800.0s)
[2025-10-13 07:18:09] 2025-10-13 11:17:09,047 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,047 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,047 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,047 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,047 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,047 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,047 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,047 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,047 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,048 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,048 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,048 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,048 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,048 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,048 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,048 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,048 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,048 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:18:09] 2025-10-13 11:17:09,048 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,048 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:18:09] 2025-10-13 11:17:09,048 | INFO     | job 6841069122 has completed (purged errors)
[2025-10-13 07:18:09] 2025-10-13 11:17:09,048 | INFO     | overall cleanup function is called
[2025-10-13 07:18:09] 2025-10-13 11:17:10,057 | INFO     | --- collectZombieJob: --- 10, [2087718]
[2025-10-13 07:18:09] 2025-10-13 11:17:10,057 | INFO     | zombie collector waiting for pid 2087718
[2025-10-13 07:18:09] 2025-10-13 11:17:10,057 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:18:09] 2025-10-13 11:17:10,057 | INFO     | collected zombie processes
[2025-10-13 07:18:09] 2025-10-13 11:17:10,057 | INFO     | will attempt to kill all subprocesses of pid=2087718
[2025-10-13 07:18:09] 2025-10-13 11:17:10,945 | INFO     | process IDs to be killed: [2087718] (in reverse order)
[2025-10-13 07:18:09] 2025-10-13 11:17:11,762 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:18:09] 2025-10-13 11:17:11,762 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:18:09] 2025-10-13 11:17:11,790 | INFO     | did not find any defunct processes belonging to 2087718
[2025-10-13 07:18:09] 2025-10-13 11:17:11,927 | INFO     | did not find any defunct processes belonging to 2087718
[2025-10-13 07:18:09] 2025-10-13 11:17:11,928 | INFO     | ready for new job
[2025-10-13 07:18:09] 2025-10-13 11:17:11,928 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:18:09] 2025-10-13 11:17:11,929 | INFO     | ***************************************
[2025-10-13 07:18:09] 2025-10-13 11:17:11,929 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:18:09] 2025-10-13 11:17:11,929 | INFO     | ***************************************
[2025-10-13 07:18:09] 2025-10-13 11:17:11,929 | INFO     | 
[2025-10-13 07:18:09] 2025-10-13 11:17:11,973 | INFO     | architecture information:
[2025-10-13 07:18:09] 2025-10-13 11:17:11,978 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:18:09] 2025-10-13 11:17:12,081 | INFO     | cat /etc/os-release:
[2025-10-13 07:18:09] NAME="CentOS Linux"
[2025-10-13 07:18:09] VERSION="7 (Core)"
[2025-10-13 07:18:09] ID="centos"
[2025-10-13 07:18:09] ID_LIKE="rhel fedora"
[2025-10-13 07:18:09] VERSION_ID="7"
[2025-10-13 07:18:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:18:09] ANSI_COLOR="0;31"
[2025-10-13 07:18:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:18:09] HOME_URL="https://www.centos.org/"
[2025-10-13 07:18:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:18:09] 
[2025-10-13 07:18:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:18:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:18:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:18:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:18:09] 
[2025-10-13 07:18:09] 2025-10-13 11:17:12,081 | INFO     | ***************************************
[2025-10-13 07:18:09] 2025-10-13 11:17:12,585 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 07:18:09] 2025-10-13 11:17:12,624 | INFO     | sufficient remaining disk space (94905565184 B)
[2025-10-13 07:18:09] 2025-10-13 11:17:12,624 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:18:09] 2025-10-13 11:17:12,624 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:18:09] 2025-10-13 11:17:12,625 | INFO     | update_server=False
[2025-10-13 07:18:09] 2025-10-13 11:17:12,625 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:18:09] 2025-10-13 11:17:12,929 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:18:09] 2025-10-13 11:17:12,929 | INFO     | aborting loop
[2025-10-13 07:18:09] 2025-10-13 11:17:13,106 | INFO     | all data control threads have been joined
[2025-10-13 07:18:09] 2025-10-13 11:17:13,514 | INFO     | all payload control threads have been joined
[2025-10-13 07:18:09] 2025-10-13 11:17:13,630 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:13,772 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:18:09] 2025-10-13 11:17:13,871 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:13,935 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:13,939 | INFO     | all job control threads have been joined
[2025-10-13 07:18:09] 2025-10-13 11:17:13,983 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:13,993 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:18:09] 2025-10-13 11:17:14,112 | INFO     | [data] control thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:14,274 | INFO     | [job] validate thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:14,313 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:14,490 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:18:09] 2025-10-13 11:17:14,535 | INFO     | [payload] control thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:14,576 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:14,583 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:14,621 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:14,686 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:14,968 | INFO     | [job] control thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:15,012 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:15,779 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:18,499 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:18:09] 2025-10-13 11:17:27,230 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:18:09] 2025-10-13 11:17:27,412 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140481674381120)>', '<ExcThread(monitor, started 140481065383680)>']
[2025-10-13 07:18:09] 2025-10-13 11:17:32,438 | INFO     | all workflow threads have been joined
[2025-10-13 07:18:09] 2025-10-13 11:17:32,438 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:18:09] 2025-10-13 11:17:32,438 | INFO     | traces error code: 0
[2025-10-13 07:18:09] 2025-10-13 11:17:32,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:18:09] 2025-10-13 11:17:42,850 | INFO     | PID=2041484 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 07:18:09] 2025-10-13 11:17:42,851 | INFO     | .. there are 46 such processes running
[2025-10-13 07:18:09] 2025-10-13 11:17:42,851 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:18:09] 2025-10-13 11:17:42,851 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:18:09] 2025-10-13 11:17:42,851 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:18:09] 2025-10-13 11:17:42,851 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:18:09] 2025-10-13 11:17:42,851 | INFO     | [monitor] control thread has ended
[2025-10-13 07:18:09] 2025-10-13 11:17:43,036 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:18:09] 2025-10-13 11:17:43,046 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:18:09] 2025-10-13 11:17:43,066 [wrapper] pilotpid: 2041484
[2025-10-13 07:18:09] 2025-10-13 11:17:43,105 [wrapper] Pilot exit status: 0
[2025-10-13 07:18:09] 2025-10-13 11:17:43,250 [wrapper] pandaids: 6841069122 6841069122
[2025-10-13 07:18:09] 2025-10-13 11:17:43,384 [wrapper] cleanup supervisor_pilot 3680620 2041485
[2025-10-13 07:18:09] 2025-10-13 11:17:43,419 [wrapper] Test setup, not cleaning
[2025-10-13 07:18:09] 2025-10-13 11:17:43,439 [wrapper] apfmon messages muted
[2025-10-13 07:18:09] 2025-10-13 11:17:43,473 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:18:09] 2025-10-13 11:17:43,499 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:18:09]  *** Error codes and diagnostics ***
[2025-10-13 07:18:09]     "exeErrorCode": 0,
[2025-10-13 07:18:09]     "exeErrorDiag": "",
[2025-10-13 07:18:09]     "pilotErrorCode": 0,
[2025-10-13 07:18:09]     "pilotErrorDiag": "",
[2025-10-13 07:18:09]  *** Listing of results directory ***
[2025-10-13 07:18:09] total 636608
[2025-10-13 07:18:09] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-13 07:18:09] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 20:11 pilot3.tar.gz
[2025-10-13 07:18:09] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 20:40 queuedata.json
[2025-10-13 07:18:09] -rwx------. 1 boincer umatlas     36292 Oct 12 20:41 runpilot2-wrapper.sh
[2025-10-13 07:18:09] -rw-r--r--. 1 boincer umatlas       100 Oct 13 03:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:18:09] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 03:57 run_atlas
[2025-10-13 07:18:09] -rw-r--r--. 1 boincer umatlas       105 Oct 13 03:57 job.xml
[2025-10-13 07:18:09] -rw-r--r--. 3 boincer umatlas 222357721 Oct 13 03:57 EVNT.46676267._004700.pool.root.1
[2025-10-13 07:18:09] -rw-r--r--. 3 boincer umatlas 222357721 Oct 13 03:57 ATLAS.root_0
[2025-10-13 07:18:09] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 03:57 start_atlas.sh
[2025-10-13 07:18:09] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 03:57 shared
[2025-10-13 07:18:09] -rw-r--r--. 2 boincer umatlas    569682 Oct 13 03:57 input.tar.gz
[2025-10-13 07:18:09] -rw-r--r--. 1 boincer umatlas         0 Oct 13 03:57 boinc_lockfile
[2025-10-13 07:18:09] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 05:10 pandaJob.out
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas    972857 Oct 13 05:10 agis_schedconf.cvmfs.json
[2025-10-13 07:18:09] -rw-r--r--. 1 boincer umatlas      7161 Oct 13 07:10 init_data.xml
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas 200533566 Oct 13 07:15 HITS.46676269._093331.pool.root.1
[2025-10-13 07:18:09] -rw-r--r--. 1 boincer umatlas       530 Oct 13 07:15 boinc_task_state.xml
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas      1060 Oct 13 07:16 memory_monitor_summary.json
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas   1560580 Oct 13 07:16 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas    385407 Oct 13 07:16 log.46676269._093331.job.log.tgz.1
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas      7798 Oct 13 07:17 heartbeat.json
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas       823 Oct 13 07:17 pilotlog.txt
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas        96 Oct 13 07:17 pilot_heartbeat.json
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas    981600 Oct 13 07:17 log.46676269._093331.job.log.1
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas       357 Oct 13 07:17 output.list
[2025-10-13 07:18:09] -rw-r--r--. 1 boincer umatlas       620 Oct 13 07:17 runtime_log
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas   1382400 Oct 13 07:17 result.tar.gz
[2025-10-13 07:18:09] -rw-r--r--. 1 boincer umatlas      8780 Oct 13 07:17 runtime_log.err
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas       780 Oct 13 07:17 opGMDmonLS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmxOVMDmbnGgWo.diag
[2025-10-13 07:18:09] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 07:18 boinc_mmap_file
[2025-10-13 07:18:09] -rw-r--r--. 1 boincer umatlas        27 Oct 13 07:18 wrapper_checkpoint.txt
[2025-10-13 07:18:09] -rw-r--r--. 1 boincer umatlas     23279 Oct 13 07:18 stderr.txt
[2025-10-13 07:18:09] HITS file was successfully produced:
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas 200533566 Oct 13 07:15 shared/HITS.pool.root.1
[2025-10-13 07:18:09]  *** Contents of shared directory: ***
[2025-10-13 07:18:09] total 414920
[2025-10-13 07:18:09] -rw-r--r--. 3 boincer umatlas 222357721 Oct 13 03:57 ATLAS.root_0
[2025-10-13 07:18:09] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 03:57 start_atlas.sh
[2025-10-13 07:18:09] -rw-r--r--. 2 boincer umatlas    569682 Oct 13 03:57 input.tar.gz
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas 200533566 Oct 13 07:15 HITS.pool.root.1
[2025-10-13 07:18:09] -rw-------. 1 boincer umatlas   1382400 Oct 13 07:17 result.tar.gz
07:18:11 (2020001): run_atlas exited; CPU time 26048.914797
07:18:11 (2020001): called boinc_finish(0)

</stderr_txt>
]]>

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