Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:03:35 (3262): wrapper (7.7.26015): starting
04:03:35 (3262): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 04:03:35] Arguments: --nthreads 12
[2025-10-13 04:03:35] Threads: 12
[2025-10-13 04:03:35] Checking for CVMFS
[2025-10-13 04:03:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:03:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:03:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:03:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:03:35] 2.11.2.0 6893 53970 86412 151653 1 57 13494308 20275200 1 130560 0 30597703 99.957 2546268 28032 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 04:03:35] CVMFS is ok
[2025-10-13 04:03:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:03:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:03:35] Further information can be found at the LHC@home message board.
[2025-10-13 04:03:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:03:35] Checking for apptainer binary...
[2025-10-13 04:03:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:03:35] Running /usr/bin/apptainer --version
[2025-10-13 04:03:35] apptainer version 1.3.2-1.el7
[2025-10-13 04:03:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:03:37] c-205-3.aglt2.org
[2025-10-13 04:03:37] apptainer works
[2025-10-13 04:03:37] Set ATHENA_PROC_NUMBER=12
[2025-10-13 04:03:37] Set ATHENA_CORE_NUMBER=12
[2025-10-13 04:03:37] Starting ATLAS job with PandaID=6831127406
[2025-10-13 04:03:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:07:22]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:07:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6831127406/log.46376905._080358.job.log.tgz.1
[2025-10-13 05:07:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/0f/log.46376905._080358.job.log.tgz.1
[2025-10-13 05:07:22]  workdir=None
[2025-10-13 05:07:22] ]
[2025-10-13 05:07:22] 2025-10-13 09:06:41,816 | INFO     | transferring file log.46376905._080358.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6831127406/log.46376905._080358.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 05:07:22] 2025-10-13 09:06:41,817 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6831127406/log.46376905._080358.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._080358.job
[2025-10-13 05:07:22] 2025-10-13 09:06:41,838 | INFO     | adding to output.list: log.46376905._080358.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/0f/log.46376905._080358.job.log.tg
[2025-10-13 05:07:22] 2025-10-13 09:06:41,839 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:07:22] 2025-10-13 09:06:41,839 | INFO     | summary of transferred files:
[2025-10-13 05:07:22] 2025-10-13 09:06:41,839 | INFO     |  -- lfn=log.46376905._080358.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:07:22] 2025-10-13 09:06:41,839 | INFO     | stage-out finished correctly
[2025-10-13 05:07:22] 2025-10-13 09:06:42,037 | INFO     | PID=6970 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 05:07:22] 2025-10-13 09:06:42,754 | WARNING  | process 13435 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 05:07:22] 2025-10-13 09:06:42,754 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6831127406/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:07:22] 2025-10-13 09:06:42,846 | INFO     | number of running child processes to parent process 13435: 1
[2025-10-13 05:07:22] 2025-10-13 09:06:42,847 | INFO     | maximum number of monitored processes: 6
[2025-10-13 05:07:22] 2025-10-13 09:06:43,039 | INFO     | time since job start (3771s) is within the limit (172800.0s)
[2025-10-13 05:07:22] 2025-10-13 09:06:44,549 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:07:22] 2025-10-13 09:06:44,910 | INFO     | job 6831127406 has state=finished
[2025-10-13 05:07:22] 2025-10-13 09:06:44,910 | INFO     | preparing for final server update for job 6831127406 in state='finished'
[2025-10-13 05:07:22] 2025-10-13 09:06:44,911 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:07:22] 2025-10-13 09:06:44,911 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:07:22] 2025-10-13 09:06:44,912 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:07:22] 2025-10-13 09:06:44,912 | INFO     | job 6831127406 has finished - writing final server update
[2025-10-13 05:07:22] 2025-10-13 09:06:44,912 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:07:22] 2025-10-13 09:06:44,913 | INFO     | executing command: lscpu
[2025-10-13 05:07:22] 2025-10-13 09:06:44,939 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:07:22] 2025-10-13 09:06:45,044 | INFO     | time since job start (3773s) is within the limit (172800.0s)
[2025-10-13 05:07:22] 2025-10-13 09:06:45,045 | INFO     | 3775s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 05:07:22] 2025-10-13 09:06:45,350 | INFO     | monitor loop #283: job 0:6831127406 is in state 'finished'
[2025-10-13 05:07:22] 2025-10-13 09:06:45,350 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:07:22] 2025-10-13 09:06:47,050 | INFO     | time since job start (3775s) is within the limit (172800.0s)
[2025-10-13 05:07:22] 2025-10-13 09:06:47,853 | INFO     | monitor loop #284: job 0:6831127406 is in state 'finished'
[2025-10-13 05:07:22] 2025-10-13 09:06:47,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:07:22] 2025-10-13 09:06:49,055 | INFO     | time since job start (3777s) is within the limit (172800.0s)
[2025-10-13 05:07:22] 2025-10-13 09:06:49,663 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 05:07:22] 2025-10-13 09:06:49,667 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-13 05:07:22] 2025-10-13 09:06:49,669 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6831127406/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:07:22] 2025-10-13 09:06:49,670 | INFO     | extracted standard info from prmon json
[2025-10-13 05:07:22] 2025-10-13 09:06:49,670 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:07:22] 2025-10-13 09:06:49,671 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:07:22] 2025-10-13 09:06:49,671 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:07:22] 2025-10-13 09:06:49,671 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:07:22] 2025-10-13 09:06:49,673 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:07:22] 2025-10-13 09:06:49,673 | INFO     | sum of square deviations: 51573060.0
[2025-10-13 05:07:22] 2025-10-13 09:06:49,674 | INFO     | sum of deviations: -2588893436.0000005
[2025-10-13 05:07:22] 2025-10-13 09:06:49,674 | INFO     | mean x: 1760344613.0
[2025-10-13 05:07:22] 2025-10-13 09:06:49,674 | INFO     | mean y: 2693671.8
[2025-10-13 05:07:22] 2025-10-13 09:06:49,674 | INFO     | -- intersect: 88369461393.0417
[2025-10-13 05:07:22] 2025-10-13 09:06:49,674 | INFO     | intersect: 88369461393.0417
[2025-10-13 05:07:22] 2025-10-13 09:06:49,674 | INFO     | chi2: 0.04354910709148888
[2025-10-13 05:07:22] 2025-10-13 09:06:49,674 | INFO     | -- intersect: 88369461393.0417
[2025-10-13 05:07:22] 2025-10-13 09:06:49,675 | INFO     | current memory leak: -50.20 B/s (using 55 data points, chi2=0.04)
[2025-10-13 05:07:22] 2025-10-13 09:06:49,675 | INFO     | could have reported an average CPU frequency of 1967 MHz (6 samples)
[2025-10-13 05:07:22] 2025-10-13 09:06:49,675 | INFO     | ..............................
[2025-10-13 05:07:22] 2025-10-13 09:06:49,675 | INFO     | . Timing measurements:
[2025-10-13 05:07:22] 2025-10-13 09:06:49,675 | INFO     | . get job = 0 s
[2025-10-13 05:07:22] 2025-10-13 09:06:49,675 | INFO     | . initial setup = 2 s
[2025-10-13 05:07:22] 2025-10-13 09:06:49,675 | INFO     | . payload setup = 7 s
[2025-10-13 05:07:22] 2025-10-13 09:06:49,676 | INFO     | . stage-in = 0 s
[2025-10-13 05:07:22] 2025-10-13 09:06:49,676 | INFO     | . payload execution = 3742 s
[2025-10-13 05:07:22] 2025-10-13 09:06:49,676 | INFO     | . stage-out = 0 s
[2025-10-13 05:07:22] 2025-10-13 09:06:49,676 | INFO     | . log creation = 0 s
[2025-10-13 05:07:22] 2025-10-13 09:06:49,676 | INFO     | ..............................
[2025-10-13 05:07:22] 2025-10-13 09:06:49,963 | INFO     | 
[2025-10-13 05:07:22] 2025-10-13 09:06:49,964 | INFO     | job summary report
[2025-10-13 05:07:22] 2025-10-13 09:06:49,964 | INFO     | --------------------------------------------------
[2025-10-13 05:07:22] 2025-10-13 09:06:49,964 | INFO     | PanDA job id: 6831127406
[2025-10-13 05:07:22] 2025-10-13 09:06:49,964 | INFO     | task id: 46376905
[2025-10-13 05:07:22] 2025-10-13 09:06:49,964 | INFO     | errors: (none)
[2025-10-13 05:07:22] 2025-10-13 09:06:49,964 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:07:22] 2025-10-13 09:06:49,965 | INFO     | pilot state: finished 
[2025-10-13 05:07:22] 2025-10-13 09:06:49,965 | INFO     | transexitcode: 0
[2025-10-13 05:07:22] 2025-10-13 09:06:49,965 | INFO     | exeerrorcode: 0
[2025-10-13 05:07:22] 2025-10-13 09:06:49,965 | INFO     | exeerrordiag: 
[2025-10-13 05:07:22] 2025-10-13 09:06:49,965 | INFO     | exitcode: 0
[2025-10-13 05:07:22] 2025-10-13 09:06:49,966 | INFO     | exitmsg: OK
[2025-10-13 05:07:22] 2025-10-13 09:06:49,966 | INFO     | cpuconsumptiontime: 40523 s
[2025-10-13 05:07:22] 2025-10-13 09:06:49,966 | INFO     | nevents: 400
[2025-10-13 05:07:22] 2025-10-13 09:06:49,966 | INFO     | neventsw: 0
[2025-10-13 05:07:22] 2025-10-13 09:06:49,966 | INFO     | pid: 13435
[2025-10-13 05:07:22] 2025-10-13 09:06:49,966 | INFO     | pgrp: 13435
[2025-10-13 05:07:22] 2025-10-13 09:06:49,966 | INFO     | corecount: 12
[2025-10-13 05:07:22] 2025-10-13 09:06:49,967 | INFO     | event service: False
[2025-10-13 05:07:22] 2025-10-13 09:06:49,967 | INFO     | sizes: {0: 2348644, 1: 2348843, 6: 2349105, 11: 2349133, 3753: 2374856, 3754: 2383854, 3757: 2384038, 3762: 2384232}
[2025-10-13 05:07:22] 2025-10-13 09:06:49,967 | INFO     | --------------------------------------------------
[2025-10-13 05:07:22] 2025-10-13 09:06:49,967 | INFO     | 
[2025-10-13 05:07:22] 2025-10-13 09:06:49,967 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 05:07:22] 2025-10-13 09:06:49,991 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,991 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,991 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,992 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,992 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,992 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,992 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,992 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,992 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,993 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,993 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,993 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,993 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,993 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,993 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,994 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,994 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:07:22] 2025-10-13 09:06:49,994 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:07:22] 2025-10-13 09:06:49,994 | INFO     | job 6831127406 has completed (purged errors)
[2025-10-13 05:07:22] 2025-10-13 09:06:49,994 | INFO     | overall cleanup function is called
[2025-10-13 05:07:22] 2025-10-13 09:06:51,002 | INFO     | --- collectZombieJob: --- 10, [13435]
[2025-10-13 05:07:22] 2025-10-13 09:06:51,003 | INFO     | zombie collector waiting for pid 13435
[2025-10-13 05:07:22] 2025-10-13 09:06:51,003 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:07:22] 2025-10-13 09:06:51,003 | INFO     | collected zombie processes
[2025-10-13 05:07:22] 2025-10-13 09:06:51,003 | INFO     | will attempt to kill all subprocesses of pid=13435
[2025-10-13 05:07:22] 2025-10-13 09:06:51,097 | INFO     | process IDs to be killed: [13435] (in reverse order)
[2025-10-13 05:07:22] 2025-10-13 09:06:51,154 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:07:22] 2025-10-13 09:06:51,218 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:07:22] 2025-10-13 09:06:51,221 | INFO     | did not find any defunct processes belonging to 13435
[2025-10-13 05:07:22] 2025-10-13 09:06:51,223 | INFO     | did not find any defunct processes belonging to 13435
[2025-10-13 05:07:22] 2025-10-13 09:06:51,223 | INFO     | ready for new job
[2025-10-13 05:07:22] 2025-10-13 09:06:51,223 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:07:22] 2025-10-13 09:06:51,225 | INFO     | ***************************************
[2025-10-13 05:07:22] 2025-10-13 09:06:51,225 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 05:07:22] 2025-10-13 09:06:51,225 | INFO     | ***************************************
[2025-10-13 05:07:22] 2025-10-13 09:06:51,225 | INFO     | 
[2025-10-13 05:07:22] 2025-10-13 09:06:51,226 | INFO     | architecture information:
[2025-10-13 05:07:22] 2025-10-13 09:06:51,226 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:07:22] 2025-10-13 09:06:51,241 | INFO     | cat /etc/os-release:
[2025-10-13 05:07:22] NAME="CentOS Linux"
[2025-10-13 05:07:22] VERSION="7 (Core)"
[2025-10-13 05:07:22] ID="centos"
[2025-10-13 05:07:22] ID_LIKE="rhel fedora"
[2025-10-13 05:07:22] VERSION_ID="7"
[2025-10-13 05:07:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:07:22] ANSI_COLOR="0;31"
[2025-10-13 05:07:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:07:22] HOME_URL="https://www.centos.org/"
[2025-10-13 05:07:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:07:22] 
[2025-10-13 05:07:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:07:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:07:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:07:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:07:22] 
[2025-10-13 05:07:22] 2025-10-13 09:06:51,241 | INFO     | ***************************************
[2025-10-13 05:07:22] 2025-10-13 09:06:51,744 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 05:07:22] 2025-10-13 09:06:51,762 | INFO     | sufficient remaining disk space (29524754432 B)
[2025-10-13 05:07:22] 2025-10-13 09:06:51,762 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:07:22] 2025-10-13 09:06:51,763 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:07:22] 2025-10-13 09:06:51,763 | INFO     | update_server=False
[2025-10-13 05:07:22] 2025-10-13 09:06:51,763 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:07:22] 2025-10-13 09:06:51,764 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:07:22] 2025-10-13 09:06:51,764 | INFO     | aborting loop
[2025-10-13 05:07:22] 2025-10-13 09:06:51,773 | INFO     | all data control threads have been joined
[2025-10-13 05:07:22] 2025-10-13 09:06:52,352 | INFO     | all payload control threads have been joined
[2025-10-13 05:07:22] 2025-10-13 09:06:52,437 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:07:22] 2025-10-13 09:06:52,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:07:22] 2025-10-13 09:06:52,769 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:52,769 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:52,778 | INFO     | [data] control thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:52,912 | INFO     | [job] validate thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:52,922 | INFO     | all job control threads have been joined
[2025-10-13 05:07:22] 2025-10-13 09:06:53,050 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:53,325 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:53,357 | INFO     | [payload] control thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:53,484 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:53,563 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:53,618 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:53,774 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:53,927 | INFO     | [job] control thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:54,040 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:54,442 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:06:55,140 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:07:22] 2025-10-13 09:06:57,416 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:07:22] 2025-10-13 09:06:59,146 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:07:01,916 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:07:22] 2025-10-13 09:07:02,921 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:07:22] 2025-10-13 09:07:03,919 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140436827821888)>', '<ExcThread(monitor, started 140436052088576)>']
[2025-10-13 05:07:22] 2025-10-13 09:07:08,942 | INFO     | all workflow threads have been joined
[2025-10-13 05:07:22] 2025-10-13 09:07:08,942 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:07:22] 2025-10-13 09:07:08,943 | INFO     | traces error code: 0
[2025-10-13 05:07:22] 2025-10-13 09:07:08,943 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:07:22] 2025-10-13 09:07:22,250 | INFO     | PID=6970 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 05:07:22] 2025-10-13 09:07:22,250 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:07:22] 2025-10-13 09:07:22,250 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:07:22] 2025-10-13 09:07:22,250 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:07:22] 2025-10-13 09:07:22,250 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:07:22] 2025-10-13 09:07:22,250 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 05:07:22] 2025-10-13 09:07:22,251 | INFO     | [monitor] control thread has ended
[2025-10-13 05:07:22] 2025-10-13 09:07:22,344 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:07:22] 2025-10-13 09:07:22,348 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:07:22] 2025-10-13 09:07:22,351 [wrapper] pilotpid: 6970
[2025-10-13 05:07:22] 2025-10-13 09:07:22,354 [wrapper] Pilot exit status: 0
[2025-10-13 05:07:22] 2025-10-13 09:07:22,369 [wrapper] pandaids: 6831127406
[2025-10-13 05:07:22] 2025-10-13 09:07:22,408 [wrapper] cleanup supervisor_pilot 30685 6971
[2025-10-13 05:07:22] 2025-10-13 09:07:22,412 [wrapper] Test setup, not cleaning
[2025-10-13 05:07:22] 2025-10-13 09:07:22,416 [wrapper] apfmon messages muted
[2025-10-13 05:07:22] 2025-10-13 09:07:22,420 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:07:22] 2025-10-13 09:07:22,424 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:07:22]  *** Error codes and diagnostics ***
[2025-10-13 05:07:22]     "exeErrorCode": 0,
[2025-10-13 05:07:22]     "exeErrorDiag": "",
[2025-10-13 05:07:22]     "pilotErrorCode": 0,
[2025-10-13 05:07:22]     "pilotErrorDiag": "",
[2025-10-13 05:07:22]  *** Listing of results directory ***
[2025-10-13 05:07:22] total 384880
[2025-10-13 05:07:22] -rw-r--r-- 1 boincer umatlas    552446 Oct  5 04:56 pilot3.tar.gz
[2025-10-13 05:07:22] -rwx------ 1 boincer umatlas     36292 Oct  5 05:31 runpilot2-wrapper.sh
[2025-10-13 05:07:22] -rw-r--r-- 1 boincer umatlas      5112 Oct  5 05:31 queuedata.json
[2025-10-13 05:07:22] -rw-r--r-- 1 boincer umatlas       100 Oct 13 04:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:07:22] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 04:03 run_atlas
[2025-10-13 05:07:22] -rw-r--r-- 1 boincer umatlas       105 Oct 13 04:03 job.xml
[2025-10-13 05:07:22] -rw-r--r-- 2 boincer umatlas 214127755 Oct 13 04:03 EVNT.46376901._002942.pool.root.1
[2025-10-13 05:07:22] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 04:03 start_atlas.sh
[2025-10-13 05:07:22] drwxrwx--x 2 boincer umatlas      4096 Oct 13 04:03 shared
[2025-10-13 05:07:22] -rw-r--r-- 2 boincer umatlas    565602 Oct 13 04:03 input.tar.gz
[2025-10-13 05:07:22] -rw-r--r-- 1 boincer umatlas         0 Oct 13 04:03 boinc_lockfile
[2025-10-13 05:07:22] -rw-r--r-- 1 boincer umatlas      2518 Oct 13 04:03 pandaJob.out
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas    972849 Oct 13 04:03 agis_schedconf.cvmfs.json
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas   1560580 Oct 13 04:03 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:07:22] drwx------ 4 boincer umatlas      4096 Oct 13 04:03 pilot3
[2025-10-13 05:07:22] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 05:01 init_data.xml
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas 174241514 Oct 13 05:06 HITS.46376905._080358.pool.root.1
[2025-10-13 05:07:22] -rw-r--r-- 1 boincer umatlas       530 Oct 13 05:06 boinc_task_state.xml
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas      1050 Oct 13 05:06 memory_monitor_summary.json
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas    376378 Oct 13 05:06 log.46376905._080358.job.log.tgz.1
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas        95 Oct 13 05:06 pilot_heartbeat.json
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas      7852 Oct 13 05:06 heartbeat.json
[2025-10-13 05:07:22] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 05:07 boinc_mmap_file
[2025-10-13 05:07:22] -rw-r--r-- 1 boincer umatlas        27 Oct 13 05:07 wrapper_checkpoint.txt
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas       814 Oct 13 05:07 pilotlog.txt
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas    555706 Oct 13 05:07 log.46376905._080358.job.log.1
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas       357 Oct 13 05:07 output.list
[2025-10-13 05:07:22] -rw-r--r-- 1 boincer umatlas       620 Oct 13 05:07 runtime_log
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas    952320 Oct 13 05:07 result.tar.gz
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas       658 Oct 13 05:07 TkPMDmaGaP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9gONDmvTtuzn.diag
[2025-10-13 05:07:22] -rw-r--r-- 1 boincer umatlas      8700 Oct 13 05:07 runtime_log.err
[2025-10-13 05:07:22] -rw-r--r-- 1 boincer umatlas     22323 Oct 13 05:07 stderr.txt
[2025-10-13 05:07:22] HITS file was successfully produced:
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas 174241514 Oct 13 05:06 shared/HITS.pool.root.1
[2025-10-13 05:07:22]  *** Contents of shared directory: ***
[2025-10-13 05:07:22] total 380780
[2025-10-13 05:07:22] -rw-r--r-- 2 boincer umatlas 214127755 Oct 13 04:03 ATLAS.root_0
[2025-10-13 05:07:22] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 04:03 start_atlas.sh
[2025-10-13 05:07:22] -rw-r--r-- 2 boincer umatlas    565602 Oct 13 04:03 input.tar.gz
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas 174241514 Oct 13 05:06 HITS.pool.root.1
[2025-10-13 05:07:22] -rw------- 1 boincer umatlas    952320 Oct 13 05:07 result.tar.gz
05:07:23 (3262): run_atlas exited; CPU time 40501.867318
05:07:23 (3262): called boinc_finish(0)

</stderr_txt>
]]>

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