Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:07:54 (1852851): wrapper (7.7.26015): starting
05:07:54 (1852851): wrapper: running run_atlas (--nthreads 11)
[2025-10-13 05:07:54] Arguments: --nthreads 11
[2025-10-13 05:07:54] Threads: 11
[2025-10-13 05:07:54] Checking for CVMFS
[2025-10-13 05:07:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:07:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:07:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:07:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:07:55] 2.13.2.0 2216807 130482 423032 151654 3 188 36215973 40960001 1219 16776704 30 270225030 99.729 199506402 21781 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 05:07:55] CVMFS is ok
[2025-10-13 05:07:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:07:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:07:55] Further information can be found at the LHC@home message board.
[2025-10-13 05:07:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:07:55] Checking for apptainer binary...
[2025-10-13 05:07:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:07:55] Running /usr/bin/apptainer --version
[2025-10-13 05:07:55] apptainer version 1.4.3-1.el9
[2025-10-13 05:07:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:07:55] c7-11-11.aglt2.org
[2025-10-13 05:07:55] apptainer works
[2025-10-13 05:07:55] Set ATHENA_PROC_NUMBER=11
[2025-10-13 05:07:55] Set ATHENA_CORE_NUMBER=11
[2025-10-13 05:07:55] Starting ATLAS job with PandaID=6840225195
[2025-10-13 05:07:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:44:29]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:44:29]  replicas=None
[2025-10-13 05:44:29]  scope=mc23_13p6TeV
[2025-10-13 05:44:29]  status=None
[2025-10-13 05:44:29]  status_code=0
[2025-10-13 05:44:29]  storage_token=
[2025-10-13 05:44:29]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6840225195/log.46676269._082489.job.log.tgz.1
[2025-10-13 05:44:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/12/log.46676269._082489.job.log.tgz.1
[2025-10-13 05:44:29]  workdir=None
[2025-10-13 05:44:29] ]
[2025-10-13 05:44:29] 2025-10-13 09:43:52,460 | INFO     | transferring file log.46676269._082489.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6840225195/log.46676269._082489.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 05:44:29] 2025-10-13 09:43:52,460 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6840225195/log.46676269._082489.job.log.tgz.1 /tmp/boinchome/slots/3/log.46676269._082489.job
[2025-10-13 05:44:29] 2025-10-13 09:43:52,474 | INFO     | adding to output.list: log.46676269._082489.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/12/log.46676269._082489.job.log.tg
[2025-10-13 05:44:29] 2025-10-13 09:43:52,475 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:44:29] 2025-10-13 09:43:52,475 | INFO     | summary of transferred files:
[2025-10-13 05:44:29] 2025-10-13 09:43:52,475 | INFO     |  -- lfn=log.46676269._082489.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:44:29] 2025-10-13 09:43:52,475 | INFO     | stage-out finished correctly
[2025-10-13 05:44:29] 2025-10-13 09:43:53,568 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:44:29] 2025-10-13 09:43:53,595 | INFO     | time since job start (2150s) is within the limit (172800.0s)
[2025-10-13 05:44:29] 2025-10-13 09:43:53,620 | INFO     | job 6840225195 has state=finished
[2025-10-13 05:44:29] 2025-10-13 09:43:53,621 | INFO     | preparing for final server update for job 6840225195 in state='finished'
[2025-10-13 05:44:29] 2025-10-13 09:43:53,621 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:44:29] 2025-10-13 09:43:53,621 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:44:29] 2025-10-13 09:43:53,621 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:44:29] 2025-10-13 09:43:53,621 | INFO     | job 6840225195 has finished - writing final server update
[2025-10-13 05:44:29] 2025-10-13 09:43:53,621 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:44:29] 2025-10-13 09:43:53,622 | INFO     | executing command: lscpu
[2025-10-13 05:44:29] 2025-10-13 09:43:53,668 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:44:29] 2025-10-13 09:43:53,830 | WARNING  | process 1862972 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 05:44:29] 2025-10-13 09:43:53,831 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6840225195/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:44:29] 2025-10-13 09:43:53,999 | INFO     | number of running child processes to parent process 1862972: 1
[2025-10-13 05:44:29] 2025-10-13 09:43:53,999 | INFO     | maximum number of monitored processes: 6
[2025-10-13 05:44:29] 2025-10-13 09:43:55,606 | INFO     | time since job start (2152s) is within the limit (172800.0s)
[2025-10-13 05:44:29] 2025-10-13 09:43:56,502 | INFO     | monitor loop #164: job 0:6840225195 is in state 'finished'
[2025-10-13 05:44:29] 2025-10-13 09:43:56,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:44:29] 2025-10-13 09:43:56,668 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 05:44:29] 2025-10-13 09:43:56,671 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3054.440812499999
[2025-10-13 05:44:29] 2025-10-13 09:43:56,678 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6840225195/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:44:29] 2025-10-13 09:43:56,678 | INFO     | extracted standard info from prmon json
[2025-10-13 05:44:29] 2025-10-13 09:43:56,678 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:44:29] 2025-10-13 09:43:56,678 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:44:29] 2025-10-13 09:43:56,679 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:44:29] 2025-10-13 09:43:56,679 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:44:29] 2025-10-13 09:43:56,679 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:44:29] 2025-10-13 09:43:56,680 | INFO     | sum of square deviations: 6798267.0
[2025-10-13 05:44:29] 2025-10-13 09:43:56,680 | INFO     | sum of deviations: -331509532.5000001
[2025-10-13 05:44:29] 2025-10-13 09:43:56,680 | INFO     | mean x: 1760347634.5
[2025-10-13 05:44:29] 2025-10-13 09:43:56,680 | INFO     | mean y: 2352946.8928571427
[2025-10-13 05:44:29] 2025-10-13 09:43:56,680 | INFO     | -- intersect: 85843644757.08154
[2025-10-13 05:44:29] 2025-10-13 09:43:56,680 | INFO     | intersect: 85843644757.08154
[2025-10-13 05:44:29] 2025-10-13 09:43:56,680 | INFO     | chi2: 0.03966988809330979
[2025-10-13 05:44:29] 2025-10-13 09:43:56,680 | INFO     | -- intersect: 85843644757.08154
[2025-10-13 05:44:29] 2025-10-13 09:43:56,680 | INFO     | current memory leak: -48.76 B/s (using 28 data points, chi2=0.04)
[2025-10-13 05:44:29] 2025-10-13 09:43:56,681 | INFO     | could have reported an average CPU frequency of 3067 MHz (5 samples)
[2025-10-13 05:44:29] 2025-10-13 09:43:56,681 | INFO     | ..............................
[2025-10-13 05:44:29] 2025-10-13 09:43:56,681 | INFO     | . Timing measurements:
[2025-10-13 05:44:29] 2025-10-13 09:43:56,681 | INFO     | . get job = 0 s
[2025-10-13 05:44:29] 2025-10-13 09:43:56,681 | INFO     | . initial setup = 2 s
[2025-10-13 05:44:29] 2025-10-13 09:43:56,681 | INFO     | . payload setup = 4 s
[2025-10-13 05:44:29] 2025-10-13 09:43:56,681 | INFO     | . stage-in = 0 s
[2025-10-13 05:44:29] 2025-10-13 09:43:56,681 | INFO     | . payload execution = 2126 s
[2025-10-13 05:44:29] 2025-10-13 09:43:56,681 | INFO     | . stage-out = 0 s
[2025-10-13 05:44:29] 2025-10-13 09:43:56,681 | INFO     | . log creation = 0 s
[2025-10-13 05:44:29] 2025-10-13 09:43:56,681 | INFO     | ..............................
[2025-10-13 05:44:29] 2025-10-13 09:43:57,073 | INFO     | 
[2025-10-13 05:44:29] 2025-10-13 09:43:57,073 | INFO     | job summary report
[2025-10-13 05:44:29] 2025-10-13 09:43:57,073 | INFO     | --------------------------------------------------
[2025-10-13 05:44:29] 2025-10-13 09:43:57,073 | INFO     | PanDA job id: 6840225195
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | task id: 46676269
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | errors: (none)
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | pilot state: finished 
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | transexitcode: 0
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | exeerrorcode: 0
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | exeerrordiag: 
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | exitcode: 0
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | exitmsg: OK
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | cpuconsumptiontime: 20784 s
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | nevents: 400
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | neventsw: 0
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | pid: 1862972
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | pgrp: 1862972
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | corecount: 11
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | event service: False
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 2134: 2383270, 2136: 2383270, 2139: 2383496}
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | --------------------------------------------------
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | 
[2025-10-13 05:44:29] 2025-10-13 09:43:57,074 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-13 05:44:29] 2025-10-13 09:43:57,089 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,089 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,089 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,089 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,089 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,089 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,089 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,089 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,089 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,089 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,089 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,089 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,090 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,090 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,090 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,090 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,090 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,090 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:44:29] 2025-10-13 09:43:57,090 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,090 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:44:29] 2025-10-13 09:43:57,090 | INFO     | job 6840225195 has completed (purged errors)
[2025-10-13 05:44:29] 2025-10-13 09:43:57,090 | INFO     | overall cleanup function is called
[2025-10-13 05:44:29] 2025-10-13 09:43:58,098 | INFO     | --- collectZombieJob: --- 10, [1862972]
[2025-10-13 05:44:29] 2025-10-13 09:43:58,098 | INFO     | zombie collector waiting for pid 1862972
[2025-10-13 05:44:29] 2025-10-13 09:43:58,098 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:44:29] 2025-10-13 09:43:58,098 | INFO     | collected zombie processes
[2025-10-13 05:44:29] 2025-10-13 09:43:58,098 | INFO     | will attempt to kill all subprocesses of pid=1862972
[2025-10-13 05:44:29] 2025-10-13 09:43:58,268 | INFO     | process IDs to be killed: [1862972] (in reverse order)
[2025-10-13 05:44:29] 2025-10-13 09:43:58,334 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:44:29] 2025-10-13 09:43:58,334 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:44:29] 2025-10-13 09:43:58,341 | INFO     | did not find any defunct processes belonging to 1862972
[2025-10-13 05:44:29] 2025-10-13 09:43:58,347 | INFO     | did not find any defunct processes belonging to 1862972
[2025-10-13 05:44:29] 2025-10-13 09:43:58,347 | INFO     | ready for new job
[2025-10-13 05:44:29] 2025-10-13 09:43:58,348 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:44:29] 2025-10-13 09:43:58,348 | INFO     | ***************************************
[2025-10-13 05:44:29] 2025-10-13 09:43:58,349 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:44:29] 2025-10-13 09:43:58,349 | INFO     | ***************************************
[2025-10-13 05:44:29] 2025-10-13 09:43:58,349 | INFO     | 
[2025-10-13 05:44:29] 2025-10-13 09:43:58,363 | INFO     | architecture information:
[2025-10-13 05:44:29] 2025-10-13 09:43:58,363 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:44:29] 2025-10-13 09:43:58,373 | INFO     | cat /etc/os-release:
[2025-10-13 05:44:29] NAME="CentOS Linux"
[2025-10-13 05:44:29] VERSION="7 (Core)"
[2025-10-13 05:44:29] ID="centos"
[2025-10-13 05:44:29] ID_LIKE="rhel fedora"
[2025-10-13 05:44:29] VERSION_ID="7"
[2025-10-13 05:44:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:44:29] ANSI_COLOR="0;31"
[2025-10-13 05:44:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:44:29] HOME_URL="https://www.centos.org/"
[2025-10-13 05:44:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:44:29] 
[2025-10-13 05:44:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:44:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:44:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:44:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:44:29] 
[2025-10-13 05:44:29] 2025-10-13 09:43:58,374 | INFO     | ***************************************
[2025-10-13 05:44:29] 2025-10-13 09:43:58,876 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-13 05:44:29] 2025-10-13 09:43:58,887 | INFO     | sufficient remaining disk space (83534807040 B)
[2025-10-13 05:44:29] 2025-10-13 09:43:58,887 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:44:29] 2025-10-13 09:43:58,887 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:44:29] 2025-10-13 09:43:58,887 | INFO     | update_server=False
[2025-10-13 05:44:29] 2025-10-13 09:43:58,887 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:44:29] 2025-10-13 09:43:58,888 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:44:29] 2025-10-13 09:43:59,004 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 05:44:29] 2025-10-13 09:43:59,005 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 05:44:29] 2025-10-13 09:43:59,006 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:44:29] 2025-10-13 09:43:59,006 | INFO     | will abort loop
[2025-10-13 05:44:29] 2025-10-13 09:43:59,112 | INFO     | all job control threads have been joined
[2025-10-13 05:44:29] 2025-10-13 09:43:59,251 | INFO     | all payload control threads have been joined
[2025-10-13 05:44:29] 2025-10-13 09:43:59,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:44:29] 2025-10-13 09:43:59,893 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:43:59,920 | INFO     | all data control threads have been joined
[2025-10-13 05:44:29] 2025-10-13 09:44:00,012 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:00,116 | INFO     | [job] control thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:00,189 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:00,197 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:00,256 | INFO     | [payload] control thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:00,308 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:00,661 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:00,753 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:00,893 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:00,926 | INFO     | [data] control thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:01,006 | INFO     | [job] validate thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:01,360 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:01,360 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:01,744 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:44:29] 2025-10-13 09:44:02,749 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:03,632 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:44:29] 2025-10-13 09:44:05,939 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:44:29] 2025-10-13 09:44:07,578 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140056068376384)>', '<ExcThread(monitor, started 140055578400512)>']
[2025-10-13 05:44:29] 2025-10-13 09:44:12,603 | INFO     | all workflow threads have been joined
[2025-10-13 05:44:29] 2025-10-13 09:44:12,603 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:44:29] 2025-10-13 09:44:12,604 | INFO     | traces error code: 0
[2025-10-13 05:44:29] 2025-10-13 09:44:12,604 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:44:29] 2025-10-13 09:44:28,882 | INFO     | PID=1856559 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:44:29] 2025-10-13 09:44:28,882 | INFO     | .. there are 5 such processes running
[2025-10-13 05:44:29] 2025-10-13 09:44:28,882 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:44:29] 2025-10-13 09:44:28,882 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:44:29] 2025-10-13 09:44:28,882 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:44:29] 2025-10-13 09:44:28,882 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:44:29] 2025-10-13 09:44:28,882 | INFO     | [monitor] control thread has ended
[2025-10-13 05:44:29] 2025-10-13 09:44:28,953 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:44:29] 2025-10-13 09:44:28,955 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:44:29] 2025-10-13 09:44:28,957 [wrapper] pilotpid: 1856559
[2025-10-13 05:44:29] 2025-10-13 09:44:28,959 [wrapper] Pilot exit status: 0
[2025-10-13 05:44:29] 2025-10-13 09:44:28,968 [wrapper] pandaids: 6840225195
[2025-10-13 05:44:29] 2025-10-13 09:44:29,015 [wrapper] cleanup supervisor_pilot 1928178 1856560
[2025-10-13 05:44:29] 2025-10-13 09:44:29,017 [wrapper] Test setup, not cleaning
[2025-10-13 05:44:29] 2025-10-13 09:44:29,019 [wrapper] apfmon messages muted
[2025-10-13 05:44:29] 2025-10-13 09:44:29,021 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:44:29] 2025-10-13 09:44:29,023 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:44:29]  *** Error codes and diagnostics ***
[2025-10-13 05:44:29]     "exeErrorCode": 0,
[2025-10-13 05:44:29]     "exeErrorDiag": "",
[2025-10-13 05:44:29]     "pilotErrorCode": 0,
[2025-10-13 05:44:29]     "pilotErrorDiag": "",
[2025-10-13 05:44:29]  *** Listing of results directory ***
[2025-10-13 05:44:29] total 415040
[2025-10-13 05:44:29] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-13 05:44:29] -rwx------. 1 boincer umatlas     36292 Oct 12 11:42 runpilot2-wrapper.sh
[2025-10-13 05:44:29] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 11:42 queuedata.json
[2025-10-13 05:44:29] -rw-r--r--. 1 boincer umatlas       100 Oct 13 05:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:44:29] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 05:07 run_atlas
[2025-10-13 05:44:29] -rw-r--r--. 1 boincer umatlas       105 Oct 13 05:07 job.xml
[2025-10-13 05:44:29] -rw-r--r--. 2 boincer umatlas 222892234 Oct 13 05:07 EVNT.46676267._004581.pool.root.1
[2025-10-13 05:44:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 05:07 start_atlas.sh
[2025-10-13 05:44:29] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 05:07 shared
[2025-10-13 05:44:29] -rw-r--r--. 2 boincer umatlas    569678 Oct 13 05:07 input.tar.gz
[2025-10-13 05:44:29] -rw-r--r--. 1 boincer umatlas         0 Oct 13 05:07 boinc_lockfile
[2025-10-13 05:44:29] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 05:07 pandaJob.out
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas    972857 Oct 13 05:08 agis_schedconf.cvmfs.json
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas   1560580 Oct 13 05:08 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:44:29] drwx------. 5 boincer umatlas      4096 Oct 13 05:08 pilot3
[2025-10-13 05:44:29] -rw-r--r--. 1 boincer umatlas      6900 Oct 13 05:38 init_data.xml
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas 196810480 Oct 13 05:43 HITS.46676269._082489.pool.root.1
[2025-10-13 05:44:29] -rw-r--r--. 1 boincer umatlas       529 Oct 13 05:43 boinc_task_state.xml
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas        95 Oct 13 05:43 pilot_heartbeat.json
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas      1023 Oct 13 05:43 memory_monitor_summary.json
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas    351576 Oct 13 05:43 log.46676269._082489.job.log.tgz.1
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas      7763 Oct 13 05:43 heartbeat.json
[2025-10-13 05:44:29] -rw-r--r--. 1 boincer umatlas        27 Oct 13 05:44 wrapper_checkpoint.txt
[2025-10-13 05:44:29] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 05:44 boinc_mmap_file
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas       822 Oct 13 05:44 pilotlog.txt
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas    349108 Oct 13 05:44 log.46676269._082489.job.log.1
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas       357 Oct 13 05:44 output.list
[2025-10-13 05:44:29] -rw-r--r--. 1 boincer umatlas       620 Oct 13 05:44 runtime_log
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas    716800 Oct 13 05:44 result.tar.gz
[2025-10-13 05:44:29] -rw-r--r--. 1 boincer umatlas      8705 Oct 13 05:44 runtime_log.err
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas       648 Oct 13 05:44 JfwMDmLODS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmMKUMDm0h80Dn.diag
[2025-10-13 05:44:29] -rw-r--r--. 1 boincer umatlas     21842 Oct 13 05:44 stderr.txt
[2025-10-13 05:44:29] HITS file was successfully produced:
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas 196810480 Oct 13 05:43 shared/HITS.pool.root.1
[2025-10-13 05:44:29]  *** Contents of shared directory: ***
[2025-10-13 05:44:29] total 411156
[2025-10-13 05:44:29] -rw-r--r--. 2 boincer umatlas 222892234 Oct 13 05:07 ATLAS.root_0
[2025-10-13 05:44:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 05:07 start_atlas.sh
[2025-10-13 05:44:29] -rw-r--r--. 2 boincer umatlas    569678 Oct 13 05:07 input.tar.gz
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas 196810480 Oct 13 05:43 HITS.pool.root.1
[2025-10-13 05:44:29] -rw-------. 1 boincer umatlas    716800 Oct 13 05:44 result.tar.gz
05:44:30 (1852851): run_atlas exited; CPU time 20794.283506
05:44:30 (1852851): called boinc_finish(0)

</stderr_txt>
]]>

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