Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:34:15 (2627650): wrapper (7.7.26015): starting
19:34:15 (2627650): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 19:34:15] Arguments: --nthreads 2
[2025-10-13 19:34:15] Threads: 2
[2025-10-13 19:34:15] Checking for CVMFS
[2025-10-13 19:34:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 19:34:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 19:34:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 19:34:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 19:34:15] 2.9.2.0 1210534 6060 59220 151668 0 56 28337635 36864000 0 130560 0 3714675 99.989 204686 769 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 19:34:15] CVMFS is ok
[2025-10-13 19:34:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 19:34:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 19:34:15] Further information can be found at the LHC@home message board.
[2025-10-13 19:34:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 19:34:15] Checking for apptainer binary...
[2025-10-13 19:34:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 19:34:15] Running /usr/bin/apptainer --version
[2025-10-13 19:34:15] apptainer version 1.4.1-1.1
[2025-10-13 19:34:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 19:34:15] thA369
[2025-10-13 19:34:15] apptainer works
[2025-10-13 19:34:15] Set ATHENA_PROC_NUMBER=2
[2025-10-13 19:34:15] Set ATHENA_CORE_NUMBER=2
[2025-10-13 19:34:15] Starting ATLAS job with PandaID=6841697679
[2025-10-13 19:34:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 21:36:45]  *** The last 200 lines of the pilot log: ***
[2025-10-13 21:36:45] 2025-10-13 19:36:26,064 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 21:36:45] 2025-10-13 19:36:26,064 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 21:36:45] 2025-10-13 19:36:26,064 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 21:36:45] 2025-10-13 19:36:26,064 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 21:36:45] 2025-10-13 19:36:26,064 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 21:36:45] 2025-10-13 19:36:26,064 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 21:36:45] 2025-10-13 19:36:26,065 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 21:36:45] 2025-10-13 19:36:26,065 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 21:36:45] 2025-10-13 19:36:26,065 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 21:36:45] 2025-10-13 19:36:26,065 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 21:36:45] 2025-10-13 19:36:26,065 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 21:36:45] 2025-10-13 19:36:26,065 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 21:36:45] 2025-10-13 19:36:26,065 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 21:36:45] 2025-10-13 19:36:26,065 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 21:36:45] 2025-10-13 19:36:26,065 | INFO     | job 6841697679 has completed (purged errors)
[2025-10-13 21:36:45] 2025-10-13 19:36:26,065 | INFO     | overall cleanup function is called
[2025-10-13 21:36:45] 2025-10-13 19:36:27,071 | INFO     | --- collectZombieJob: --- 10, [2637770]
[2025-10-13 21:36:45] 2025-10-13 19:36:27,071 | INFO     | zombie collector waiting for pid 2637770
[2025-10-13 21:36:45] 2025-10-13 19:36:27,072 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 21:36:45] 2025-10-13 19:36:27,072 | INFO     | collected zombie processes
[2025-10-13 21:36:45] 2025-10-13 19:36:27,072 | INFO     | will attempt to kill all subprocesses of pid=2637770
[2025-10-13 21:36:45] 2025-10-13 19:36:27,108 | INFO     | process IDs to be killed: [2637770] (in reverse order)
[2025-10-13 21:36:45] 2025-10-13 19:36:27,128 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 21:36:45] 2025-10-13 19:36:27,128 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 21:36:45] 2025-10-13 19:36:27,129 | INFO     | did not find any defunct processes belonging to 2637770
[2025-10-13 21:36:45] 2025-10-13 19:36:27,130 | INFO     | did not find any defunct processes belonging to 2637770
[2025-10-13 21:36:45] 2025-10-13 19:36:27,130 | INFO     | ready for new job
[2025-10-13 21:36:45] 2025-10-13 19:36:27,130 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 21:36:45] 2025-10-13 19:36:27,130 | INFO     | ***************************************
[2025-10-13 21:36:45] 2025-10-13 19:36:27,130 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 21:36:45] 2025-10-13 19:36:27,130 | INFO     | ***************************************
[2025-10-13 21:36:45] 2025-10-13 19:36:27,131 | INFO     | 
[2025-10-13 21:36:45] 2025-10-13 19:36:27,131 | INFO     | architecture information:
[2025-10-13 21:36:45] 2025-10-13 19:36:27,131 | INFO     | executing command: cat /etc/os-release
[2025-10-13 21:36:45] 2025-10-13 19:36:27,140 | INFO     | cat /etc/os-release:
[2025-10-13 21:36:45] NAME="CentOS Linux"
[2025-10-13 21:36:45] VERSION="7 (Core)"
[2025-10-13 21:36:45] ID="centos"
[2025-10-13 21:36:45] ID_LIKE="rhel fedora"
[2025-10-13 21:36:45] VERSION_ID="7"
[2025-10-13 21:36:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 21:36:45] ANSI_COLOR="0;31"
[2025-10-13 21:36:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 21:36:45] HOME_URL="https://www.centos.org/"
[2025-10-13 21:36:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 21:36:45] 
[2025-10-13 21:36:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 21:36:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 21:36:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 21:36:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 21:36:45] 
[2025-10-13 21:36:45] 2025-10-13 19:36:27,140 | INFO     | ***************************************
[2025-10-13 21:36:45] 2025-10-13 19:36:27,643 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 21:36:45] 2025-10-13 19:36:27,655 | INFO     | sufficient remaining disk space (333074923520 B)
[2025-10-13 21:36:45] 2025-10-13 19:36:27,655 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 21:36:45] 2025-10-13 19:36:27,656 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 21:36:45] 2025-10-13 19:36:27,656 | INFO     | update_server=False
[2025-10-13 21:36:45] 2025-10-13 19:36:27,656 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 21:36:45] 2025-10-13 19:36:27,656 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 21:36:45] 2025-10-13 19:36:27,656 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 21:36:45] 2025-10-13 19:36:27,656 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 21:36:45] 2025-10-13 19:36:27,656 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:36:45] 2025-10-13 19:36:27,656 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:36:45] 2025-10-13 19:36:27,656 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 21:36:45] 2025-10-13 19:36:27,656 | INFO     | aborting loop
[2025-10-13 21:36:45] 2025-10-13 19:36:27,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 21:36:45] 2025-10-13 19:36:28,154 | INFO     | all job control threads have been joined
[2025-10-13 21:36:45] 2025-10-13 19:36:28,661 | INFO     | [job] retrieve thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:28,662 | INFO     | [job] job monitor thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:28,663 | INFO     | [job] queue monitor thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:28,755 | INFO     | all data control threads have been joined
[2025-10-13 21:36:45] 2025-10-13 19:36:28,770 | INFO     | all payload control threads have been joined
[2025-10-13 21:36:45] 2025-10-13 19:36:29,160 | INFO     | [job] control thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:29,226 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 21:36:45] 2025-10-13 19:36:29,366 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:29,761 | INFO     | [data] control thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:29,775 | INFO     | [payload] control thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:29,859 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:29,887 | INFO     | [data] copytool_out thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:29,906 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:29,918 | INFO     | [job] validate thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:29,943 | INFO     | [data] copytool_in thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:30,197 | INFO     | [payload] validate_post thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:30,222 | INFO     | [payload] failed_post thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:33,233 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:37,866 | INFO     | job.realtimelogging is not enabled
[2025-10-13 21:36:45] 2025-10-13 19:36:38,595 | INFO     | [monitor] cgroup control has ended
[2025-10-13 21:36:45] 2025-10-13 19:36:38,871 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 21:36:45] 2025-10-13 19:36:40,241 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140590297851712)>', '<ExcThread(monitor, started 140589421020928)>']
[2025-10-13 21:36:45] 2025-10-13 19:36:40,725 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 21:36:45] 2025-10-13 19:36:40,726 | INFO     | [monitor] control thread has ended
[2025-10-13 21:36:45] 2025-10-13 19:36:45,267 | INFO     | all workflow threads have been joined
[2025-10-13 21:36:45] 2025-10-13 19:36:45,268 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 21:36:45] 2025-10-13 19:36:45,268 | INFO     | traces error code: 0
[2025-10-13 21:36:45] 2025-10-13 19:36:45,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 21:36:45] 2025-10-13 19:36:45,310 [wrapper] ==== pilot stdout END ====
[2025-10-13 21:36:45] 2025-10-13 19:36:45,312 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 21:36:45] 2025-10-13 19:36:45,315 [wrapper] pilotpid: 2631354
[2025-10-13 21:36:45] 2025-10-13 19:36:45,317 [wrapper] Pilot exit status: 0
[2025-10-13 21:36:45] 2025-10-13 19:36:45,322 [wrapper] pandaids: 6841697679
[2025-10-13 21:36:45] 2025-10-13 19:36:45,334 [wrapper] cleanup supervisor_pilot 2652054 2631355
[2025-10-13 21:36:45] 2025-10-13 19:36:45,336 [wrapper] Test setup, not cleaning
[2025-10-13 21:36:45] 2025-10-13 19:36:45,338 [wrapper] apfmon messages muted
[2025-10-13 21:36:45] 2025-10-13 19:36:45,340 [wrapper] ==== wrapper stdout END ====
[2025-10-13 21:36:45] 2025-10-13 19:36:45,342 [wrapper] ==== wrapper stderr END ====
[2025-10-13 21:36:45]  *** Error codes and diagnostics ***
[2025-10-13 21:36:45]     "exeErrorCode": 0,
[2025-10-13 21:36:45]     "exeErrorDiag": "",
[2025-10-13 21:36:45]     "pilotErrorCode": 0,
[2025-10-13 21:36:45]     "pilotErrorDiag": "",
[2025-10-13 21:36:45]  *** Listing of results directory ***
[2025-10-13 21:36:45] total 404504
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc    557409 Oct 13 04:00 pilot3.tar.gz
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc      5112 Oct 13 04:58 queuedata.json
[2025-10-13 21:36:45] -rwx------ 1 boinc boinc     36292 Oct 13 05:00 runpilot2-wrapper.sh
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc       100 Oct 13 19:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 21:36:45] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 19:34 run_atlas
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc       105 Oct 13 19:34 job.xml
[2025-10-13 21:36:45] -rw-r--r-- 2 boinc boinc 219220331 Oct 13 19:34 EVNT.46676267._002514.pool.root.1
[2025-10-13 21:36:45] -rw-r--r-- 2 boinc boinc    569688 Oct 13 19:34 input.tar.gz
[2025-10-13 21:36:45] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:34 start_atlas.sh
[2025-10-13 21:36:45] drwxrwx--x 2 boinc boinc      4096 Oct 13 19:34 shared
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc         0 Oct 13 19:34 boinc_setup_complete
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc      6206 Oct 13 19:34 init_data.xml
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc         0 Oct 13 19:34 boinc_lockfile
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc      2550 Oct 13 19:34 pandaJob.out
[2025-10-13 21:36:45] -rw------- 1 boinc boinc    972791 Oct 13 19:34 agis_schedconf.cvmfs.json
[2025-10-13 21:36:45] -rw------- 1 boinc boinc   1560580 Oct 13 19:34 agis_ddmendpoints.agis.ALL.json
[2025-10-13 21:36:45] drwx------ 5 boinc boinc      4096 Oct 13 19:34 pilot3
[2025-10-13 21:36:45] -rw------- 1 boinc boinc 188414104 Oct 13 21:35 HITS.46676269._095413.pool.root.1
[2025-10-13 21:36:45] -rw------- 1 boinc boinc        95 Oct 13 21:36 pilot_heartbeat.json
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc       529 Oct 13 21:36 boinc_task_state.xml
[2025-10-13 21:36:45] -rw------- 1 boinc boinc      1013 Oct 13 21:36 memory_monitor_summary.json
[2025-10-13 21:36:45] -rw------- 1 boinc boinc    287262 Oct 13 21:36 log.46676269._095413.job.log.tgz.1
[2025-10-13 21:36:45] -rw------- 1 boinc boinc      7752 Oct 13 21:36 heartbeat.json
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc      8192 Oct 13 21:36 boinc_mmap_file
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc        27 Oct 13 21:36 wrapper_checkpoint.txt
[2025-10-13 21:36:45] -rw------- 1 boinc boinc      4628 Oct 13 21:36 pilotlog.txt
[2025-10-13 21:36:45] -rw------- 1 boinc boinc   1055292 Oct 13 21:36 log.46676269._095413.job.log.1
[2025-10-13 21:36:45] -rw------- 1 boinc boinc       357 Oct 13 21:36 output.list
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc       620 Oct 13 21:36 runtime_log
[2025-10-13 21:36:45] -rw------- 1 boinc boinc   1361920 Oct 13 21:36 result.tar.gz
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc      8777 Oct 13 21:36 runtime_log.err
[2025-10-13 21:36:45] -rw------- 1 boinc boinc       659 Oct 13 21:36 oHOMDmIyNS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMZmNDmodr1Lo.diag
[2025-10-13 21:36:45] -rw-r--r-- 1 boinc boinc     12262 Oct 13 21:36 stderr.txt
[2025-10-13 21:36:45] HITS file was successfully produced:
[2025-10-13 21:36:45] -rw------- 1 boinc boinc 188414104 Oct 13 21:35 shared/HITS.pool.root.1
[2025-10-13 21:36:45]  *** Contents of shared directory: ***
[2025-10-13 21:36:45] total 400000
[2025-10-13 21:36:45] -rw-r--r-- 2 boinc boinc 219220331 Oct 13 19:34 ATLAS.root_0
[2025-10-13 21:36:45] -rw-r--r-- 2 boinc boinc    569688 Oct 13 19:34 input.tar.gz
[2025-10-13 21:36:45] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:34 start_atlas.sh
[2025-10-13 21:36:45] -rw------- 1 boinc boinc 188414104 Oct 13 21:35 HITS.pool.root.1
[2025-10-13 21:36:45] -rw------- 1 boinc boinc   1361920 Oct 13 21:36 result.tar.gz
21:36:47 (2627650): run_atlas exited; CPU time 14236.862854
21:36:47 (2627650): called boinc_finish(0)

</stderr_txt>
]]>

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