Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:45:16 (1884615): wrapper (7.7.26015): starting
03:45:16 (1884615): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 03:45:16] Arguments: --nthreads 8
[2025-10-13 03:45:16] Threads: 8
[2025-10-13 03:45:16] Checking for CVMFS
[2025-10-13 03:45:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:45:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:45:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:45:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:45:16] 2.13.2.0 9460 35386 232532 151653 1 188 31926317 32935937 2765 16776704 0 104079728 99.706 79619447 30073 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 03:45:16] CVMFS is ok
[2025-10-13 03:45:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:45:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:45:16] Further information can be found at the LHC@home message board.
[2025-10-13 03:45:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:45:16] Checking for apptainer binary...
[2025-10-13 03:45:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:45:16] Running /usr/bin/apptainer --version
[2025-10-13 03:45:16] apptainer version 1.4.3-1.el9
[2025-10-13 03:45:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:45:16] c-4-11.aglt2.org
[2025-10-13 03:45:16] apptainer works
[2025-10-13 03:45:16] Set ATHENA_PROC_NUMBER=8
[2025-10-13 03:45:16] Set ATHENA_CORE_NUMBER=8
[2025-10-13 03:45:16] Starting ATLAS job with PandaID=6841874673
[2025-10-13 03:45:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:10:39]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:10:39]  status_code=0
[2025-10-13 05:10:39]  storage_token=
[2025-10-13 05:10:39]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6841874673/log.46676269._095588.job.log.tgz.1
[2025-10-13 05:10:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/28/log.46676269._095588.job.log.tgz.1
[2025-10-13 05:10:39]  workdir=None
[2025-10-13 05:10:39] ]
[2025-10-13 05:10:39] 2025-10-13 09:09:41,360 | INFO     | transferring file log.46676269._095588.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6841874673/log.46676269._095588.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 05:10:39] 2025-10-13 09:09:41,360 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6841874673/log.46676269._095588.job.log.tgz.1 /tmp/boinchome/slots/3/log.46676269._095588.job
[2025-10-13 05:10:39] 2025-10-13 09:09:41,376 | INFO     | adding to output.list: log.46676269._095588.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/28/log.46676269._095588.job.log.tg
[2025-10-13 05:10:39] 2025-10-13 09:09:41,377 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:10:39] 2025-10-13 09:09:41,377 | INFO     | summary of transferred files:
[2025-10-13 05:10:39] 2025-10-13 09:09:41,377 | INFO     |  -- lfn=log.46676269._095588.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:10:39] 2025-10-13 09:09:41,378 | INFO     | stage-out finished correctly
[2025-10-13 05:10:39] 2025-10-13 09:09:41,486 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:10:39] 2025-10-13 09:09:42,259 | INFO     | monitor loop #378: job 0:6841874673 is in state 'finished'
[2025-10-13 05:10:39] 2025-10-13 09:09:42,260 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:10:39] 2025-10-13 09:09:42,428 | INFO     | time since job start (5055s) is within the limit (172800.0s)
[2025-10-13 05:10:39] 2025-10-13 09:09:43,744 | INFO     | PID=1888541 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 05:10:39] 2025-10-13 09:09:43,745 | INFO     | .. there are 4 such processes running
[2025-10-13 05:10:39] 2025-10-13 09:09:44,027 | INFO     | job 6841874673 has state=finished
[2025-10-13 05:10:39] 2025-10-13 09:09:44,027 | INFO     | preparing for final server update for job 6841874673 in state='finished'
[2025-10-13 05:10:39] 2025-10-13 09:09:44,028 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:10:39] 2025-10-13 09:09:44,028 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:10:39] 2025-10-13 09:09:44,028 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:10:39] 2025-10-13 09:09:44,028 | INFO     | job 6841874673 has finished - writing final server update
[2025-10-13 05:10:39] 2025-10-13 09:09:44,028 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:10:39] 2025-10-13 09:09:44,029 | INFO     | executing command: lscpu
[2025-10-13 05:10:39] 2025-10-13 09:09:44,076 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:10:39] 2025-10-13 09:09:44,745 | INFO     | time since job start (5057s) is within the limit (172800.0s)
[2025-10-13 05:10:39] 2025-10-13 09:09:44,762 | INFO     | monitor loop #379: job 0:6841874673 is in state 'finished'
[2025-10-13 05:10:39] 2025-10-13 09:09:44,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:10:39] 2025-10-13 09:09:46,751 | INFO     | time since job start (5059s) is within the limit (172800.0s)
[2025-10-13 05:10:39] 2025-10-13 09:09:47,265 | INFO     | monitor loop #380: job 0:6841874673 is in state 'finished'
[2025-10-13 05:10:39] 2025-10-13 09:09:47,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:10:39] 2025-10-13 09:09:47,395 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 05:10:39] 2025-10-13 09:09:47,401 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2900.0647000000013
[2025-10-13 05:10:39] 2025-10-13 09:09:47,408 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6841874673/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:10:39] 2025-10-13 09:09:47,409 | INFO     | extracted standard info from prmon json
[2025-10-13 05:10:39] 2025-10-13 09:09:47,409 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:10:39] 2025-10-13 09:09:47,409 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:10:39] 2025-10-13 09:09:47,409 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:10:39] 2025-10-13 09:09:47,410 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:10:39] 2025-10-13 09:09:47,412 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:10:39] 2025-10-13 09:09:47,413 | INFO     | sum of square deviations: 136095575.0
[2025-10-13 05:10:39] 2025-10-13 09:09:47,413 | INFO     | sum of deviations: -1306962606.5000002
[2025-10-13 05:10:39] 2025-10-13 09:09:47,413 | INFO     | mean x: 1760344143.5
[2025-10-13 05:10:39] 2025-10-13 09:09:47,413 | INFO     | mean y: 2206866.8289473685
[2025-10-13 05:10:39] 2025-10-13 09:09:47,413 | INFO     | -- intersect: 16907267667.856243
[2025-10-13 05:10:39] 2025-10-13 09:09:47,414 | INFO     | intersect: 16907267667.856243
[2025-10-13 05:10:39] 2025-10-13 09:09:47,414 | INFO     | chi2: 0.07703819714378733
[2025-10-13 05:10:39] 2025-10-13 09:09:47,414 | INFO     | -- intersect: 16907267667.856243
[2025-10-13 05:10:39] 2025-10-13 09:09:47,414 | INFO     | current memory leak: -9.60 B/s (using 76 data points, chi2=0.08)
[2025-10-13 05:10:39] 2025-10-13 09:09:47,414 | INFO     | could have reported an average CPU frequency of 2833 MHz (6 samples)
[2025-10-13 05:10:39] 2025-10-13 09:09:47,415 | INFO     | ..............................
[2025-10-13 05:10:39] 2025-10-13 09:09:47,415 | INFO     | . Timing measurements:
[2025-10-13 05:10:39] 2025-10-13 09:09:47,415 | INFO     | . get job = 0 s
[2025-10-13 05:10:39] 2025-10-13 09:09:47,415 | INFO     | . initial setup = 2 s
[2025-10-13 05:10:39] 2025-10-13 09:09:47,415 | INFO     | . payload setup = 5 s
[2025-10-13 05:10:39] 2025-10-13 09:09:47,415 | INFO     | . stage-in = 0 s
[2025-10-13 05:10:39] 2025-10-13 09:09:47,415 | INFO     | . payload execution = 5029 s
[2025-10-13 05:10:39] 2025-10-13 09:09:47,415 | INFO     | . stage-out = 0 s
[2025-10-13 05:10:39] 2025-10-13 09:09:47,416 | INFO     | . log creation = 0 s
[2025-10-13 05:10:39] 2025-10-13 09:09:47,416 | INFO     | ..............................
[2025-10-13 05:10:39] 2025-10-13 09:09:47,520 | INFO     | 
[2025-10-13 05:10:39] 2025-10-13 09:09:47,520 | INFO     | job summary report
[2025-10-13 05:10:39] 2025-10-13 09:09:47,521 | INFO     | --------------------------------------------------
[2025-10-13 05:10:39] 2025-10-13 09:09:47,521 | INFO     | PanDA job id: 6841874673
[2025-10-13 05:10:39] 2025-10-13 09:09:47,521 | INFO     | task id: 46676269
[2025-10-13 05:10:39] 2025-10-13 09:09:47,521 | INFO     | errors: (none)
[2025-10-13 05:10:39] 2025-10-13 09:09:47,521 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:10:39] 2025-10-13 09:09:47,521 | INFO     | pilot state: finished 
[2025-10-13 05:10:39] 2025-10-13 09:09:47,521 | INFO     | transexitcode: 0
[2025-10-13 05:10:39] 2025-10-13 09:09:47,521 | INFO     | exeerrorcode: 0
[2025-10-13 05:10:39] 2025-10-13 09:09:47,521 | INFO     | exeerrordiag: 
[2025-10-13 05:10:39] 2025-10-13 09:09:47,522 | INFO     | exitcode: 0
[2025-10-13 05:10:39] 2025-10-13 09:09:47,522 | INFO     | exitmsg: OK
[2025-10-13 05:10:39] 2025-10-13 09:09:47,522 | INFO     | cpuconsumptiontime: 37042 s
[2025-10-13 05:10:39] 2025-10-13 09:09:47,522 | INFO     | nevents: 400
[2025-10-13 05:10:39] 2025-10-13 09:09:47,522 | INFO     | neventsw: 0
[2025-10-13 05:10:39] 2025-10-13 09:09:47,522 | INFO     | pid: 1895986
[2025-10-13 05:10:39] 2025-10-13 09:09:47,522 | INFO     | pgrp: 1895986
[2025-10-13 05:10:39] 2025-10-13 09:09:47,522 | INFO     | corecount: 8
[2025-10-13 05:10:39] 2025-10-13 09:09:47,522 | INFO     | event service: False
[2025-10-13 05:10:39] 2025-10-13 09:09:47,523 | INFO     | sizes: {0: 2348634, 1: 2348833, 4: 2349095, 11: 2349123, 5038: 2375508, 5039: 2384690, 5045: 2384828}
[2025-10-13 05:10:39] 2025-10-13 09:09:47,523 | INFO     | --------------------------------------------------
[2025-10-13 05:10:39] 2025-10-13 09:09:47,523 | INFO     | 
[2025-10-13 05:10:39] 2025-10-13 09:09:47,523 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-13 05:10:39] 2025-10-13 09:09:47,540 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,540 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,540 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,541 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,541 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,541 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,541 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,541 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,541 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,541 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,541 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,542 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,542 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,542 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,542 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,542 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,542 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,542 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:10:39] 2025-10-13 09:09:47,542 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,542 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:10:39] 2025-10-13 09:09:47,543 | INFO     | job 6841874673 has completed (purged errors)
[2025-10-13 05:10:39] 2025-10-13 09:09:47,543 | INFO     | overall cleanup function is called
[2025-10-13 05:10:39] 2025-10-13 09:09:48,551 | INFO     | --- collectZombieJob: --- 10, [1895986]
[2025-10-13 05:10:39] 2025-10-13 09:09:48,551 | INFO     | zombie collector waiting for pid 1895986
[2025-10-13 05:10:39] 2025-10-13 09:09:48,551 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:10:39] 2025-10-13 09:09:48,551 | INFO     | collected zombie processes
[2025-10-13 05:10:39] 2025-10-13 09:09:48,551 | INFO     | will attempt to kill all subprocesses of pid=1895986
[2025-10-13 05:10:39] 2025-10-13 09:09:48,800 | INFO     | process IDs to be killed: [1895986] (in reverse order)
[2025-10-13 05:10:39] 2025-10-13 09:09:48,867 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:10:39] 2025-10-13 09:09:48,868 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:10:39] 2025-10-13 09:09:48,875 | INFO     | did not find any defunct processes belonging to 1895986
[2025-10-13 05:10:39] 2025-10-13 09:09:48,881 | INFO     | did not find any defunct processes belonging to 1895986
[2025-10-13 05:10:39] 2025-10-13 09:09:48,882 | INFO     | ready for new job
[2025-10-13 05:10:39] 2025-10-13 09:09:48,882 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:10:39] 2025-10-13 09:09:48,883 | INFO     | ***************************************
[2025-10-13 05:10:39] 2025-10-13 09:09:48,883 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:10:39] 2025-10-13 09:09:48,884 | INFO     | ***************************************
[2025-10-13 05:10:39] 2025-10-13 09:09:48,884 | INFO     | 
[2025-10-13 05:10:39] 2025-10-13 09:09:48,897 | INFO     | architecture information:
[2025-10-13 05:10:39] 2025-10-13 09:09:48,898 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:10:39] 2025-10-13 09:09:48,909 | INFO     | cat /etc/os-release:
[2025-10-13 05:10:39] NAME="CentOS Linux"
[2025-10-13 05:10:39] VERSION="7 (Core)"
[2025-10-13 05:10:39] ID="centos"
[2025-10-13 05:10:39] ID_LIKE="rhel fedora"
[2025-10-13 05:10:39] VERSION_ID="7"
[2025-10-13 05:10:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:10:39] ANSI_COLOR="0;31"
[2025-10-13 05:10:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:10:39] HOME_URL="https://www.centos.org/"
[2025-10-13 05:10:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:10:39] 
[2025-10-13 05:10:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:10:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:10:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:10:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:10:39] 
[2025-10-13 05:10:39] 2025-10-13 09:09:48,910 | INFO     | ***************************************
[2025-10-13 05:10:39] 2025-10-13 09:09:49,413 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-13 05:10:39] 2025-10-13 09:09:49,428 | INFO     | sufficient remaining disk space (74303143936 B)
[2025-10-13 05:10:39] 2025-10-13 09:09:49,428 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:10:39] 2025-10-13 09:09:49,428 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:10:39] 2025-10-13 09:09:49,428 | INFO     | update_server=False
[2025-10-13 05:10:39] 2025-10-13 09:09:49,428 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:10:39] 2025-10-13 09:09:49,429 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:10:39] 2025-10-13 09:09:49,496 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:10:39] 2025-10-13 09:09:49,712 | INFO     | all data control threads have been joined
[2025-10-13 05:10:39] 2025-10-13 09:09:49,768 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 05:10:39] 2025-10-13 09:09:49,768 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 05:10:39] 2025-10-13 09:09:49,768 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:10:39] 2025-10-13 09:09:49,768 | INFO     | will abort loop
[2025-10-13 05:10:39] 2025-10-13 09:09:49,913 | INFO     | all payload control threads have been joined
[2025-10-13 05:10:39] 2025-10-13 09:09:50,315 | INFO     | all job control threads have been joined
[2025-10-13 05:10:39] 2025-10-13 09:09:50,434 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:50,434 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:50,453 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:50,717 | INFO     | [data] control thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:50,761 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:50,773 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:50,788 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:50,918 | INFO     | [payload] control thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:51,283 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:51,290 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:51,319 | INFO     | [job] control thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:51,501 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:51,565 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:51,579 | INFO     | [job] validate thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:51,833 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:09:52,096 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:10:39] 2025-10-13 09:09:56,098 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:10:39] 2025-10-13 09:10:20,136 | INFO     | PID=1888541 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:10:39] 2025-10-13 09:10:20,136 | INFO     | .. there are 4 such processes running
[2025-10-13 05:10:39] 2025-10-13 09:10:20,137 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:10:39] 2025-10-13 09:10:20,137 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:10:39] 2025-10-13 09:10:20,137 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:10:39] 2025-10-13 09:10:33,494 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:10:39] 2025-10-13 09:10:34,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140511086675776)>', '<ExcThread(monitor, started 140510805067520)>']
[2025-10-13 05:10:39] 2025-10-13 09:10:35,213 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:10:39] 2025-10-13 09:10:35,213 | INFO     | [monitor] control thread has ended
[2025-10-13 05:10:39] 2025-10-13 09:10:39,505 | INFO     | all workflow threads have been joined
[2025-10-13 05:10:39] 2025-10-13 09:10:39,506 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:10:39] 2025-10-13 09:10:39,506 | INFO     | traces error code: 0
[2025-10-13 05:10:39] 2025-10-13 09:10:39,506 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:10:39] 2025-10-13 09:10:39,612 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:10:39] 2025-10-13 09:10:39,614 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:10:39] 2025-10-13 09:10:39,617 [wrapper] pilotpid: 1888541
[2025-10-13 05:10:39] 2025-10-13 09:10:39,619 [wrapper] Pilot exit status: 0
[2025-10-13 05:10:39] 2025-10-13 09:10:39,628 [wrapper] pandaids: 6841874673
[2025-10-13 05:10:39] 2025-10-13 09:10:39,674 [wrapper] cleanup supervisor_pilot 2070504 1888542
[2025-10-13 05:10:39] 2025-10-13 09:10:39,676 [wrapper] Test setup, not cleaning
[2025-10-13 05:10:39] 2025-10-13 09:10:39,679 [wrapper] apfmon messages muted
[2025-10-13 05:10:39] 2025-10-13 09:10:39,681 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:10:39] 2025-10-13 09:10:39,683 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:10:39]  *** Error codes and diagnostics ***
[2025-10-13 05:10:39]     "exeErrorCode": 0,
[2025-10-13 05:10:39]     "exeErrorDiag": "",
[2025-10-13 05:10:39]     "pilotErrorCode": 0,
[2025-10-13 05:10:39]     "pilotErrorDiag": "",
[2025-10-13 05:10:39]  *** Listing of results directory ***
[2025-10-13 05:10:39] total 416916
[2025-10-13 05:10:39] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 23:02 pilot3.tar.gz
[2025-10-13 05:10:39] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 23:14 queuedata.json
[2025-10-13 05:10:39] -rwx------. 1 boincer umatlas     36292 Oct 12 23:14 runpilot2-wrapper.sh
[2025-10-13 05:10:39] -rw-r--r--. 1 boincer umatlas       100 Oct 13 03:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:10:39] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 03:45 run_atlas
[2025-10-13 05:10:39] -rw-r--r--. 1 boincer umatlas       105 Oct 13 03:45 job.xml
[2025-10-13 05:10:39] -rw-r--r--. 2 boincer umatlas 222029285 Oct 13 03:45 EVNT.46676267._004303.pool.root.1
[2025-10-13 05:10:39] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 03:45 start_atlas.sh
[2025-10-13 05:10:39] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 03:45 shared
[2025-10-13 05:10:39] -rw-r--r--. 2 boincer umatlas    569680 Oct 13 03:45 input.tar.gz
[2025-10-13 05:10:39] -rw-r--r--. 1 boincer umatlas         0 Oct 13 03:45 boinc_lockfile
[2025-10-13 05:10:39] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 03:45 pandaJob.out
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas    972849 Oct 13 03:45 agis_schedconf.cvmfs.json
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas   1560580 Oct 13 03:45 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:10:39] drwx------. 5 boincer umatlas      4096 Oct 13 03:45 pilot3
[2025-10-13 05:10:39] -rw-r--r--. 1 boincer umatlas      6661 Oct 13 05:03 init_data.xml
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas 198861133 Oct 13 05:09 HITS.46676269._095588.pool.root.1
[2025-10-13 05:10:39] -rw-r--r--. 1 boincer umatlas       529 Oct 13 05:09 boinc_task_state.xml
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas      1033 Oct 13 05:09 memory_monitor_summary.json
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas    318335 Oct 13 05:09 log.46676269._095588.job.log.tgz.1
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas      7812 Oct 13 05:09 heartbeat.json
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas        95 Oct 13 05:10 pilot_heartbeat.json
[2025-10-13 05:10:39] -rw-r--r--. 1 boincer umatlas        27 Oct 13 05:10 wrapper_checkpoint.txt
[2025-10-13 05:10:39] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 05:10 boinc_mmap_file
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas      5009 Oct 13 05:10 pilotlog.txt
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas    746013 Oct 13 05:10 log.46676269._095588.job.log.1
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas       357 Oct 13 05:10 output.list
[2025-10-13 05:10:39] -rw-r--r--. 1 boincer umatlas       620 Oct 13 05:10 runtime_log
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas   1085440 Oct 13 05:10 result.tar.gz
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas       648 Oct 13 05:10 YRkLDmcCOS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmobmNDmE2UDtn.diag
[2025-10-13 05:10:39] -rw-r--r--. 1 boincer umatlas      8693 Oct 13 05:10 runtime_log.err
[2025-10-13 05:10:39] -rw-r--r--. 1 boincer umatlas     22166 Oct 13 05:10 stderr.txt
[2025-10-13 05:10:39] HITS file was successfully produced:
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas 198861133 Oct 13 05:09 shared/HITS.pool.root.1
[2025-10-13 05:10:39]  *** Contents of shared directory: ***
[2025-10-13 05:10:39] total 412672
[2025-10-13 05:10:39] -rw-r--r--. 2 boincer umatlas 222029285 Oct 13 03:45 ATLAS.root_0
[2025-10-13 05:10:39] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 03:45 start_atlas.sh
[2025-10-13 05:10:39] -rw-r--r--. 2 boincer umatlas    569680 Oct 13 03:45 input.tar.gz
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas 198861133 Oct 13 05:09 HITS.pool.root.1
[2025-10-13 05:10:39] -rw-------. 1 boincer umatlas   1085440 Oct 13 05:10 result.tar.gz
05:10:41 (1884615): run_atlas exited; CPU time 37164.697414
05:10:41 (1884615): called boinc_finish(0)

</stderr_txt>
]]>

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