Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:23:19 (4000793): wrapper (7.7.26015): starting
19:23:19 (4000793): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 19:23:19] Arguments: --nthreads 4
[2025-10-13 19:23:19] Threads: 4
[2025-10-13 19:23:19] Checking for CVMFS
[2025-10-13 19:23:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 19:23:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 19:23:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 19:23:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 19:23:19] 2.9.2.0 1861142 5936 98640 151668 0 57 23298375 36864001 0 130560 0 5433839 99.992 210922 906 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 19:23:19] CVMFS is ok
[2025-10-13 19:23:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 19:23:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 19:23:19] Further information can be found at the LHC@home message board.
[2025-10-13 19:23:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 19:23:19] Checking for apptainer binary...
[2025-10-13 19:23:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 19:23:19] Running /usr/bin/apptainer --version
[2025-10-13 19:23:19] apptainer version 1.4.1-1.1
[2025-10-13 19:23:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 19:23:19] thA319
[2025-10-13 19:23:19] apptainer works
[2025-10-13 19:23:19] Set ATHENA_PROC_NUMBER=4
[2025-10-13 19:23:19] Set ATHENA_CORE_NUMBER=4
[2025-10-13 19:23:19] Starting ATLAS job with PandaID=6841205681
[2025-10-13 19:23:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 20:31:41]  *** The last 200 lines of the pilot log: ***
[2025-10-13 20:31:41] 2025-10-13 18:31:11,573 | INFO     | will attempt to kill all subprocesses of pid=4011179
[2025-10-13 20:31:41] 2025-10-13 18:31:11,622 | INFO     | process IDs to be killed: [4011179] (in reverse order)
[2025-10-13 20:31:41] 2025-10-13 18:31:11,656 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 20:31:41] 2025-10-13 18:31:11,656 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 20:31:41] 2025-10-13 18:31:11,658 | INFO     | did not find any defunct processes belonging to 4011179
[2025-10-13 20:31:41] 2025-10-13 18:31:11,660 | INFO     | did not find any defunct processes belonging to 4011179
[2025-10-13 20:31:41] 2025-10-13 18:31:11,660 | INFO     | ready for new job
[2025-10-13 20:31:41] 2025-10-13 18:31:11,660 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 20:31:41] 2025-10-13 18:31:11,661 | INFO     | ***************************************
[2025-10-13 20:31:41] 2025-10-13 18:31:11,661 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 20:31:41] 2025-10-13 18:31:11,661 | INFO     | ***************************************
[2025-10-13 20:31:41] 2025-10-13 18:31:11,661 | INFO     | 
[2025-10-13 20:31:41] 2025-10-13 18:31:11,661 | INFO     | architecture information:
[2025-10-13 20:31:41] 2025-10-13 18:31:11,661 | INFO     | executing command: cat /etc/os-release
[2025-10-13 20:31:41] 2025-10-13 18:31:11,675 | INFO     | cat /etc/os-release:
[2025-10-13 20:31:41] NAME="CentOS Linux"
[2025-10-13 20:31:41] VERSION="7 (Core)"
[2025-10-13 20:31:41] ID="centos"
[2025-10-13 20:31:41] ID_LIKE="rhel fedora"
[2025-10-13 20:31:41] VERSION_ID="7"
[2025-10-13 20:31:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 20:31:41] ANSI_COLOR="0;31"
[2025-10-13 20:31:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 20:31:41] HOME_URL="https://www.centos.org/"
[2025-10-13 20:31:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 20:31:41] 
[2025-10-13 20:31:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 20:31:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 20:31:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 20:31:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 20:31:41] 
[2025-10-13 20:31:41] 2025-10-13 18:31:11,675 | INFO     | ***************************************
[2025-10-13 20:31:41] 2025-10-13 18:31:12,178 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 20:31:41] 2025-10-13 18:31:12,197 | INFO     | sufficient remaining disk space (334890008576 B)
[2025-10-13 20:31:41] 2025-10-13 18:31:12,197 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 20:31:41] 2025-10-13 18:31:12,197 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 20:31:41] 2025-10-13 18:31:12,197 | INFO     | update_server=False
[2025-10-13 20:31:41] 2025-10-13 18:31:12,197 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 20:31:41] 2025-10-13 18:31:12,197 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:31:41] 2025-10-13 18:31:12,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 20:31:41] 2025-10-13 18:31:12,839 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:31:41] 2025-10-13 18:31:12,840 | INFO     | aborting loop
[2025-10-13 20:31:41] 2025-10-13 18:31:13,076 | INFO     | all data control threads have been joined
[2025-10-13 20:31:41] 2025-10-13 18:31:13,198 | INFO     | [job] queue monitor thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:13,203 | INFO     | [job] retrieve thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:13,256 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:13,257 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:13,367 | INFO     | all payload control threads have been joined
[2025-10-13 20:31:41] 2025-10-13 18:31:13,436 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:13,459 | INFO     | [payload] failed_post thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:13,571 | INFO     | [data] copytool_in thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:13,594 | INFO     | all job control threads have been joined
[2025-10-13 20:31:41] 2025-10-13 18:31:13,654 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 20:31:41] 2025-10-13 18:31:13,845 | INFO     | [job] job monitor thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:14,010 | INFO     | [payload] validate_post thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:14,082 | INFO     | [data] control thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:14,373 | INFO     | [payload] control thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:14,600 | INFO     | [job] control thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:14,607 | INFO     | [job] validate thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:15,661 | INFO     | [data] copytool_out thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:16,543 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:22,814 | INFO     | job.realtimelogging is not enabled
[2025-10-13 20:31:41] 2025-10-13 18:31:23,820 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 20:31:41] 2025-10-13 18:31:31,693 | INFO     | [monitor] cgroup control has ended
[2025-10-13 20:31:41] 2025-10-13 18:31:33,174 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140543763085120)>', '<ExcThread(monitor, started 140543115904768)>']
[2025-10-13 20:31:41] 2025-10-13 18:31:38,186 | INFO     | all workflow threads have been joined
[2025-10-13 20:31:41] 2025-10-13 18:31:38,186 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 20:31:41] 2025-10-13 18:31:38,187 | INFO     | traces error code: 0
[2025-10-13 20:31:41] 2025-10-13 18:31:38,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 20:31:41] 2025-10-13 18:31:41,809 | INFO     | PID=4004603 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 20:31:41] 2025-10-13 18:31:41,809 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 20:31:41] 2025-10-13 18:31:41,810 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 20:31:41] 2025-10-13 18:31:41,810 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 20:31:41] 2025-10-13 18:31:41,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 20:31:41] 2025-10-13 18:31:41,810 | INFO     | [monitor] control thread has ended
[2025-10-13 20:31:41] 2025-10-13 18:31:41,877 [wrapper] ==== pilot stdout END ====
[2025-10-13 20:31:41] 2025-10-13 18:31:41,881 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 20:31:41] 2025-10-13 18:31:41,884 [wrapper] pilotpid: 4004603
[2025-10-13 20:31:41] 2025-10-13 18:31:41,888 [wrapper] Pilot exit status: 0
[2025-10-13 20:31:41] 2025-10-13 18:31:41,899 [wrapper] pandaids: 6841205681
[2025-10-13 20:31:41] 2025-10-13 18:31:41,921 [wrapper] cleanup supervisor_pilot 4021065 4004604
[2025-10-13 20:31:41] 2025-10-13 18:31:41,924 [wrapper] Test setup, not cleaning
[2025-10-13 20:31:41] 2025-10-13 18:31:41,928 [wrapper] apfmon messages muted
[2025-10-13 20:31:41] 2025-10-13 18:31:41,932 [wrapper] ==== wrapper stdout END ====
[2025-10-13 20:31:41] 2025-10-13 18:31:41,935 [wrapper] ==== wrapper stderr END ====
[2025-10-13 20:31:41]  *** Error codes and diagnostics ***
[2025-10-13 20:31:41]     "exeErrorCode": 0,
[2025-10-13 20:31:41]     "exeErrorDiag": "",
[2025-10-13 20:31:41]     "pilotErrorCode": 0,
[2025-10-13 20:31:41]     "pilotErrorDiag": "",
[2025-10-13 20:31:41]  *** Listing of results directory ***
[2025-10-13 20:31:41] total 402176
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc    557409 Oct 13 04:00 pilot3.tar.gz
[2025-10-13 20:31:41] -rwx------ 1 boinc boinc     36292 Oct 13 04:20 runpilot2-wrapper.sh
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc      5112 Oct 13 04:20 queuedata.json
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc       100 Oct 13 19:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 20:31:41] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 19:23 run_atlas
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc       105 Oct 13 19:23 job.xml
[2025-10-13 20:31:41] -rw-r--r-- 2 boinc boinc 219747055 Oct 13 19:23 EVNT.46676267._001967.pool.root.1
[2025-10-13 20:31:41] -rw-r--r-- 2 boinc boinc    569681 Oct 13 19:23 input.tar.gz
[2025-10-13 20:31:41] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:23 start_atlas.sh
[2025-10-13 20:31:41] drwxrwx--x 2 boinc boinc      4096 Oct 13 19:23 shared
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc         0 Oct 13 19:23 boinc_setup_complete
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc      6370 Oct 13 19:23 init_data.xml
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc         0 Oct 13 19:23 boinc_lockfile
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc      2550 Oct 13 19:23 pandaJob.out
[2025-10-13 20:31:41] -rw------- 1 boinc boinc    972791 Oct 13 19:23 agis_schedconf.cvmfs.json
[2025-10-13 20:31:41] -rw------- 1 boinc boinc   1560580 Oct 13 19:23 agis_ddmendpoints.agis.ALL.json
[2025-10-13 20:31:41] drwx------ 5 boinc boinc      4096 Oct 13 19:23 pilot3
[2025-10-13 20:31:41] -rw------- 1 boinc boinc 186464139 Oct 13 20:30 HITS.46676269._094876.pool.root.1
[2025-10-13 20:31:41] -rw------- 1 boinc boinc        95 Oct 13 20:30 pilot_heartbeat.json
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc       529 Oct 13 20:30 boinc_task_state.xml
[2025-10-13 20:31:41] -rw------- 1 boinc boinc      1019 Oct 13 20:31 memory_monitor_summary.json
[2025-10-13 20:31:41] -rw------- 1 boinc boinc    258644 Oct 13 20:31 log.46676269._094876.job.log.tgz.1
[2025-10-13 20:31:41] -rw------- 1 boinc boinc      7775 Oct 13 20:31 heartbeat.json
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc        27 Oct 13 20:31 wrapper_checkpoint.txt
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc      8192 Oct 13 20:31 boinc_mmap_file
[2025-10-13 20:31:41] -rw------- 1 boinc boinc       747 Oct 13 20:31 pilotlog.txt
[2025-10-13 20:31:41] -rw------- 1 boinc boinc    606370 Oct 13 20:31 log.46676269._094876.job.log.1
[2025-10-13 20:31:41] -rw------- 1 boinc boinc       357 Oct 13 20:31 output.list
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc       620 Oct 13 20:31 runtime_log
[2025-10-13 20:31:41] -rw------- 1 boinc boinc    880640 Oct 13 20:31 result.tar.gz
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc      8777 Oct 13 20:31 runtime_log.err
[2025-10-13 20:31:41] -rw------- 1 boinc boinc       658 Oct 13 20:31 ONBMDmiLNS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmWWVMDmT0xkWn.diag
[2025-10-13 20:31:41] -rw-r--r-- 1 boinc boinc     10289 Oct 13 20:31 stderr.txt
[2025-10-13 20:31:41] HITS file was successfully produced:
[2025-10-13 20:31:42] -rw------- 1 boinc boinc 186464139 Oct 13 20:30 shared/HITS.pool.root.1
[2025-10-13 20:31:42]  *** Contents of shared directory: ***
[2025-10-13 20:31:42] total 398140
[2025-10-13 20:31:42] -rw-r--r-- 2 boinc boinc 219747055 Oct 13 19:23 ATLAS.root_0
[2025-10-13 20:31:42] -rw-r--r-- 2 boinc boinc    569681 Oct 13 19:23 input.tar.gz
[2025-10-13 20:31:42] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:23 start_atlas.sh
[2025-10-13 20:31:42] -rw------- 1 boinc boinc 186464139 Oct 13 20:30 HITS.pool.root.1
[2025-10-13 20:31:42] -rw------- 1 boinc boinc    880640 Oct 13 20:31 result.tar.gz
20:31:43 (4000793): run_atlas exited; CPU time 15191.773359
20:31:43 (4000793): called boinc_finish(0)

</stderr_txt>
]]>

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