Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:32:50 (19313): wrapper (7.7.26015): starting
03:32:50 (19313): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 03:32:50] Arguments: --nthreads 8
[2025-10-13 03:32:50] Threads: 8
[2025-10-13 03:32:50] Checking for CVMFS
[2025-10-13 03:32:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:32:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:32:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:32:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:32:51] 2.11.2.0 11495 54045 129240 151653 1 188 17733375 18432001 1833 130560 0 50047070 99.976 2427705 27996 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 03:32:51] CVMFS is ok
[2025-10-13 03:32:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:32:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:32:51] Further information can be found at the LHC@home message board.
[2025-10-13 03:32:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:32:51] Checking for apptainer binary...
[2025-10-13 03:32:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:32:51] Running /usr/bin/apptainer --version
[2025-10-13 03:32:51] apptainer version 1.3.2-1.el7
[2025-10-13 03:32:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:32:52] c-206-31.aglt2.org
[2025-10-13 03:32:52] apptainer works
[2025-10-13 03:32:52] Set ATHENA_PROC_NUMBER=8
[2025-10-13 03:32:52] Set ATHENA_CORE_NUMBER=8
[2025-10-13 03:32:52] Starting ATLAS job with PandaID=6841698274
[2025-10-13 03:32:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:00:02 (19313): BOINC client no longer exists - exiting
04:00:02 (19313): timer handler: client dead, exiting
04:13:58 (9535): wrapper (7.7.26015): starting
04:13:58 (9535): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 04:13:58] Arguments: --nthreads 8
[2025-10-13 04:13:58] Threads: 8
[2025-10-13 04:13:58] This job has been restarted, cleaning up previous attempt
[2025-10-13 04:13:58] Checking for CVMFS
[2025-10-13 04:13:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:13:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:13:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:13:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:13:58] 2.11.2.0 11495 54086 127476 151653 0 188 17733375 18432001 1 130560 0 50118884 99.977 2427710 27995 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 04:13:58] CVMFS is ok
[2025-10-13 04:13:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:13:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:13:58] Further information can be found at the LHC@home message board.
[2025-10-13 04:13:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:13:58] Checking for apptainer binary...
[2025-10-13 04:13:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:13:58] Running /usr/bin/apptainer --version
[2025-10-13 04:13:59] apptainer version 1.3.2-1.el7
[2025-10-13 04:13:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:14:00] c-206-31.aglt2.org
[2025-10-13 04:14:00] apptainer works
[2025-10-13 04:14:00] Set ATHENA_PROC_NUMBER=8
[2025-10-13 04:14:00] Set ATHENA_CORE_NUMBER=8
[2025-10-13 04:14:00] Starting ATLAS job with PandaID=6841698274
[2025-10-13 04:14:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:14:35]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:14:35] 2025-10-13 11:13:46,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:14:35] 2025-10-13 11:13:46,976 | INFO     | time since job start (10775s) is within the limit (172800.0s)
[2025-10-13 07:14:35] 2025-10-13 11:13:47,634 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 07:14:35] 2025-10-13 11:13:47,638 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2444.6666666666665
[2025-10-13 07:14:35] 2025-10-13 11:13:47,641 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6841698274/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 07:14:35] 2025-10-13 11:13:47,641 | INFO     | extracted standard info from prmon json
[2025-10-13 07:14:35] 2025-10-13 11:13:47,641 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 07:14:35] 2025-10-13 11:13:47,641 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 07:14:35] 2025-10-13 11:13:47,642 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 07:14:35] 2025-10-13 11:13:47,642 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 07:14:35] 2025-10-13 11:13:47,644 | INFO     | fitting pss+swap vs Time
[2025-10-13 07:14:35] 2025-10-13 11:13:47,645 | INFO     | sum of square deviations: 1690450300.0
[2025-10-13 07:14:35] 2025-10-13 11:13:47,646 | INFO     | sum of deviations: 15039091005.5
[2025-10-13 07:14:35] 2025-10-13 11:13:47,646 | INFO     | mean x: 1760348615.5
[2025-10-13 07:14:35] 2025-10-13 11:13:47,646 | INFO     | mean y: 2482501.1193181816
[2025-10-13 07:14:35] 2025-10-13 11:13:47,646 | INFO     | -- intersect: -15658458864.569118
[2025-10-13 07:14:35] 2025-10-13 11:13:47,646 | INFO     | intersect: -15658458864.569118
[2025-10-13 07:14:35] 2025-10-13 11:13:47,646 | INFO     | chi2: 1.4911583085409044
[2025-10-13 07:14:35] 2025-10-13 11:13:47,647 | INFO     | sum of square deviations: 1550429070.0
[2025-10-13 07:14:35] 2025-10-13 11:13:47,647 | INFO     | sum of deviations: 14753126207.999998
[2025-10-13 07:14:35] 2025-10-13 11:13:47,647 | INFO     | mean x: 1760348463.0
[2025-10-13 07:14:35] 2025-10-13 11:13:47,648 | INFO     | mean y: 2482189.4269005847
[2025-10-13 07:14:35] 2025-10-13 11:13:47,648 | INFO     | -- intersect: -16748134492.894344
[2025-10-13 07:14:35] 2025-10-13 11:13:47,648 | INFO     | intersect: -16748134492.894344
[2025-10-13 07:14:35] 2025-10-13 11:13:47,648 | INFO     | chi2: 1.4924063325062307
[2025-10-13 07:14:35] 2025-10-13 11:13:47,648 | INFO     | current chi2=1.4924063325062307 (change=-0.08369493421174677 %)
[2025-10-13 07:14:35] 2025-10-13 11:13:47,648 | INFO     | right removable region: 170
[2025-10-13 07:14:35] 2025-10-13 11:13:47,649 | INFO     | sum of square deviations: 1550429070.0
[2025-10-13 07:14:35] 2025-10-13 11:13:47,649 | INFO     | sum of deviations: -12587469803.999996
[2025-10-13 07:14:35] 2025-10-13 11:13:47,649 | INFO     | mean x: 1760348768.0
[2025-10-13 07:14:35] 2025-10-13 11:13:47,650 | INFO     | mean y: 2512237.2923976607
[2025-10-13 07:14:35] 2025-10-13 11:13:47,650 | INFO     | -- intersect: 14294257271.27102
[2025-10-13 07:14:35] 2025-10-13 11:13:47,650 | INFO     | intersect: 14294257271.27102
[2025-10-13 07:14:35] 2025-10-13 11:13:47,650 | INFO     | chi2: 0.01954720896396222
[2025-10-13 07:14:35] 2025-10-13 11:13:47,650 | INFO     | current chi2=0.01954720896396222 (change=98.68912583915458 %)
[2025-10-13 07:14:35] 2025-10-13 11:13:47,650 | INFO     | sum of square deviations: 1418361477.5
[2025-10-13 07:14:35] 2025-10-13 11:13:47,651 | INFO     | sum of deviations: -12612322088.5
[2025-10-13 07:14:35] 2025-10-13 11:13:47,651 | INFO     | mean x: 1760348920.5
[2025-10-13 07:14:35] 2025-10-13 11:13:47,651 | INFO     | mean y: 2512258.2590361447
[2025-10-13 07:14:35] 2025-10-13 11:13:47,652 | INFO     | -- intersect: 15655847409.903608
[2025-10-13 07:14:35] 2025-10-13 11:13:47,652 | INFO     | intersect: 15655847409.903608
[2025-10-13 07:14:35] 2025-10-13 11:13:47,652 | INFO     | chi2: 0.017819055859233643
[2025-10-13 07:14:35] 2025-10-13 11:13:47,652 | INFO     | current chi2=0.017819055859233643 (change=8.840919989726654 %)
[2025-10-13 07:14:35] 2025-10-13 11:13:47,652 | INFO     | left removable region: 20
[2025-10-13 07:14:35] 2025-10-13 11:13:47,652 | INFO     | sum of square deviations: 1046484737.5
[2025-10-13 07:14:35] 2025-10-13 11:13:47,653 | INFO     | sum of deviations: -10090833378.000002
[2025-10-13 07:14:35] 2025-10-13 11:13:47,653 | INFO     | mean x: 1760349042.5
[2025-10-13 07:14:35] 2025-10-13 11:13:47,653 | INFO     | mean y: 2510302.0933333333
[2025-10-13 07:14:35] 2025-10-13 11:13:47,653 | INFO     | -- intersect: 16976851387.492435
[2025-10-13 07:14:35] 2025-10-13 11:13:47,653 | INFO     | intersect: 16976851387.492435
[2025-10-13 07:14:35] 2025-10-13 11:13:47,654 | INFO     | chi2: 0.017002650577779003
[2025-10-13 07:14:35] 2025-10-13 11:13:47,654 | INFO     | -- intersect: 16976851387.492435
[2025-10-13 07:14:35] 2025-10-13 11:13:47,654 | INFO     | current memory leak: -9.64 B/s (using 150 data points, chi2=0.02)
[2025-10-13 07:14:35] 2025-10-13 11:13:47,654 | INFO     | could have reported an average CPU frequency of 2336 MHz (9 samples)
[2025-10-13 07:14:35] 2025-10-13 11:13:47,654 | INFO     | ..............................
[2025-10-13 07:14:35] 2025-10-13 11:13:47,655 | INFO     | . Timing measurements:
[2025-10-13 07:14:35] 2025-10-13 11:13:47,655 | INFO     | . get job = 0 s
[2025-10-13 07:14:35] 2025-10-13 11:13:47,655 | INFO     | . initial setup = 1 s
[2025-10-13 07:14:35] 2025-10-13 11:13:47,655 | INFO     | . payload setup = 6 s
[2025-10-13 07:14:35] 2025-10-13 11:13:47,655 | INFO     | . stage-in = 0 s
[2025-10-13 07:14:35] 2025-10-13 11:13:47,655 | INFO     | . payload execution = 10739 s
[2025-10-13 07:14:35] 2025-10-13 11:13:47,655 | INFO     | . stage-out = 2 s
[2025-10-13 07:14:35] 2025-10-13 11:13:47,655 | INFO     | . log creation = 0 s
[2025-10-13 07:14:35] 2025-10-13 11:13:47,655 | INFO     | ..............................
[2025-10-13 07:14:35] 2025-10-13 11:13:47,870 | INFO     | 
[2025-10-13 07:14:35] 2025-10-13 11:13:47,870 | INFO     | job summary report
[2025-10-13 07:14:35] 2025-10-13 11:13:47,870 | INFO     | --------------------------------------------------
[2025-10-13 07:14:35] 2025-10-13 11:13:47,870 | INFO     | PanDA job id: 6841698274
[2025-10-13 07:14:35] 2025-10-13 11:13:47,870 | INFO     | task id: 46676269
[2025-10-13 07:14:35] 2025-10-13 11:13:47,871 | INFO     | errors: (none)
[2025-10-13 07:14:35] 2025-10-13 11:13:47,871 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 07:14:35] 2025-10-13 11:13:47,871 | INFO     | pilot state: finished 
[2025-10-13 07:14:35] 2025-10-13 11:13:47,871 | INFO     | transexitcode: 0
[2025-10-13 07:14:35] 2025-10-13 11:13:47,871 | INFO     | exeerrorcode: 0
[2025-10-13 07:14:35] 2025-10-13 11:13:47,871 | INFO     | exeerrordiag: 
[2025-10-13 07:14:35] 2025-10-13 11:13:47,872 | INFO     | exitcode: 0
[2025-10-13 07:14:35] 2025-10-13 11:13:47,872 | INFO     | exitmsg: OK
[2025-10-13 07:14:35] 2025-10-13 11:13:47,872 | INFO     | cpuconsumptiontime: 81989 s
[2025-10-13 07:14:35] 2025-10-13 11:13:47,872 | INFO     | nevents: 400
[2025-10-13 07:14:35] 2025-10-13 11:13:47,872 | INFO     | neventsw: 0
[2025-10-13 07:14:35] 2025-10-13 11:13:47,872 | INFO     | pid: 7620
[2025-10-13 07:14:35] 2025-10-13 11:13:47,873 | INFO     | pgrp: 7620
[2025-10-13 07:14:35] 2025-10-13 11:13:47,873 | INFO     | corecount: 8
[2025-10-13 07:14:35] 2025-10-13 11:13:47,873 | INFO     | event service: False
[2025-10-13 07:14:35] 2025-10-13 11:13:47,873 | INFO     | sizes: {0: 2348636, 1: 2348835, 5: 2349097, 11: 2349153, 10749: 2378046, 10753: 2387044, 10754: 2387228, 10760: 2387486}
[2025-10-13 07:14:35] 2025-10-13 11:13:47,873 | INFO     | --------------------------------------------------
[2025-10-13 07:14:35] 2025-10-13 11:13:47,874 | INFO     | 
[2025-10-13 07:14:35] 2025-10-13 11:13:47,874 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 07:14:35] 2025-10-13 11:13:47,892 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,892 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,893 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,893 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,893 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,893 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,893 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,893 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,894 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,894 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,894 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,894 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,894 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,894 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,895 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,895 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,895 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,895 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:14:35] 2025-10-13 11:13:47,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,896 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:14:35] 2025-10-13 11:13:47,896 | INFO     | job 6841698274 has completed (purged errors)
[2025-10-13 07:14:35] 2025-10-13 11:13:47,896 | INFO     | overall cleanup function is called
[2025-10-13 07:14:35] 2025-10-13 11:13:48,904 | INFO     | --- collectZombieJob: --- 10, [7620]
[2025-10-13 07:14:35] 2025-10-13 11:13:48,904 | INFO     | zombie collector waiting for pid 7620
[2025-10-13 07:14:35] 2025-10-13 11:13:48,904 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:14:35] 2025-10-13 11:13:48,904 | INFO     | collected zombie processes
[2025-10-13 07:14:35] 2025-10-13 11:13:48,904 | INFO     | will attempt to kill all subprocesses of pid=7620
[2025-10-13 07:14:35] 2025-10-13 11:13:49,039 | INFO     | process IDs to be killed: [7620] (in reverse order)
[2025-10-13 07:14:35] 2025-10-13 11:13:49,094 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:14:35] 2025-10-13 11:13:49,094 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:14:35] 2025-10-13 11:13:49,100 | INFO     | did not find any defunct processes belonging to 7620
[2025-10-13 07:14:35] 2025-10-13 11:13:49,104 | INFO     | did not find any defunct processes belonging to 7620
[2025-10-13 07:14:35] 2025-10-13 11:13:49,105 | INFO     | ready for new job
[2025-10-13 07:14:35] 2025-10-13 11:13:49,105 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:14:35] 2025-10-13 11:13:49,107 | INFO     | ***************************************
[2025-10-13 07:14:35] 2025-10-13 11:13:49,107 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:14:35] 2025-10-13 11:13:49,107 | INFO     | ***************************************
[2025-10-13 07:14:35] 2025-10-13 11:13:49,107 | INFO     | 
[2025-10-13 07:14:35] 2025-10-13 11:13:49,109 | INFO     | architecture information:
[2025-10-13 07:14:35] 2025-10-13 11:13:49,109 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:14:35] 2025-10-13 11:13:49,121 | INFO     | cat /etc/os-release:
[2025-10-13 07:14:35] NAME="CentOS Linux"
[2025-10-13 07:14:35] VERSION="7 (Core)"
[2025-10-13 07:14:35] ID="centos"
[2025-10-13 07:14:35] ID_LIKE="rhel fedora"
[2025-10-13 07:14:35] VERSION_ID="7"
[2025-10-13 07:14:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:14:35] ANSI_COLOR="0;31"
[2025-10-13 07:14:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:14:35] HOME_URL="https://www.centos.org/"
[2025-10-13 07:14:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:14:35] 
[2025-10-13 07:14:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:14:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:14:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:14:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:14:35] 
[2025-10-13 07:14:35] 2025-10-13 11:13:49,121 | INFO     | ***************************************
[2025-10-13 07:14:35] 2025-10-13 11:13:49,624 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 07:14:35] 2025-10-13 11:13:49,640 | INFO     | sufficient remaining disk space (28076670976 B)
[2025-10-13 07:14:35] 2025-10-13 11:13:49,640 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:14:35] 2025-10-13 11:13:49,640 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:14:35] 2025-10-13 11:13:49,641 | INFO     | update_server=False
[2025-10-13 07:14:35] 2025-10-13 11:13:49,641 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:14:35] 2025-10-13 11:13:49,641 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:14:35] 2025-10-13 11:13:49,641 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:14:35] 2025-10-13 11:13:49,655 | INFO     | all job control threads have been joined
[2025-10-13 07:14:35] 2025-10-13 11:13:50,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:14:35] 2025-10-13 11:13:50,048 | INFO     | aborting loop
[2025-10-13 07:14:35] 2025-10-13 11:13:50,180 | INFO     | all data control threads have been joined
[2025-10-13 07:14:35] 2025-10-13 11:13:50,647 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:50,647 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:50,661 | INFO     | [job] control thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:50,668 | INFO     | all payload control threads have been joined
[2025-10-13 07:14:35] 2025-10-13 11:13:50,941 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:50,941 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:50,942 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:51,039 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:51,054 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:51,186 | INFO     | [data] control thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:51,214 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:51,328 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:51,615 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:51,651 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:51,673 | INFO     | [payload] control thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:52,039 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:14:35] 2025-10-13 11:13:52,145 | INFO     | [job] validate thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:13:56,044 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:14:35] 2025-10-13 11:14:11,603 [wrapper] supervise_pilot (15 min periods counter: 13)
[2025-10-13 07:14:35] 2025-10-13 11:14:20,258 | INFO     | PID=20710 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 07:14:35] 2025-10-13 11:14:20,259 | INFO     | .. there are 3 such processes running
[2025-10-13 07:14:35] 2025-10-13 11:14:20,259 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:14:35] 2025-10-13 11:14:20,259 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:14:35] 2025-10-13 11:14:20,259 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:14:35] 2025-10-13 11:14:29,250 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:14:35] 2025-10-13 11:14:30,389 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139874702235456)>', '<ExcThread(monitor, started 139874132817664)>']
[2025-10-13 07:14:35] 2025-10-13 11:14:31,312 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:14:35] 2025-10-13 11:14:31,313 | INFO     | [monitor] control thread has ended
[2025-10-13 07:14:35] 2025-10-13 11:14:35,410 | INFO     | all workflow threads have been joined
[2025-10-13 07:14:35] 2025-10-13 11:14:35,410 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:14:35] 2025-10-13 11:14:35,410 | INFO     | traces error code: 0
[2025-10-13 07:14:35] 2025-10-13 11:14:35,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:14:35] 2025-10-13 11:14:35,510 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:14:35] 2025-10-13 11:14:35,512 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:14:35] 2025-10-13 11:14:35,514 [wrapper] pilotpid: 20710
[2025-10-13 07:14:35] 2025-10-13 11:14:35,516 [wrapper] Pilot exit status: 0
[2025-10-13 07:14:35] 2025-10-13 11:14:35,523 [wrapper] pandaids: 6841698274 6841698274
[2025-10-13 07:14:35] 2025-10-13 11:14:35,549 [wrapper] cleanup supervisor_pilot  7806 20711
[2025-10-13 07:14:35] 2025-10-13 11:14:35,551 [wrapper] Test setup, not cleaning
[2025-10-13 07:14:35] 2025-10-13 11:14:35,554 [wrapper] apfmon messages muted
[2025-10-13 07:14:35] 2025-10-13 11:14:35,557 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:14:35] 2025-10-13 11:14:35,559 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:14:35]  *** Error codes and diagnostics ***
[2025-10-13 07:14:35]     "exeErrorCode": 0,
[2025-10-13 07:14:35]     "exeErrorDiag": "",
[2025-10-13 07:14:35]     "pilotErrorCode": 0,
[2025-10-13 07:14:35]     "pilotErrorDiag": "",
[2025-10-13 07:14:35]  *** Listing of results directory ***
[2025-10-13 07:14:35] total 623588
[2025-10-13 07:14:35] drwx------ 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-13 07:14:35] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 22:00 pilot3.tar.gz
[2025-10-13 07:14:35] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 22:58 queuedata.json
[2025-10-13 07:14:35] -rwx------ 1 boincer umatlas     36292 Oct 12 23:00 runpilot2-wrapper.sh
[2025-10-13 07:14:35] -rw-r--r-- 1 boincer umatlas       100 Oct 13 03:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:14:35] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 03:32 run_atlas
[2025-10-13 07:14:35] -rw-r--r-- 1 boincer umatlas       105 Oct 13 03:32 job.xml
[2025-10-13 07:14:35] -rw-r--r-- 3 boincer umatlas 220930585 Oct 13 03:32 EVNT.46676267._003143.pool.root.1
[2025-10-13 07:14:35] -rw-r--r-- 3 boincer umatlas 220930585 Oct 13 03:32 ATLAS.root_0
[2025-10-13 07:14:35] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 03:32 start_atlas.sh
[2025-10-13 07:14:35] drwxrwx--x 2 boincer umatlas      4096 Oct 13 03:32 shared
[2025-10-13 07:14:35] -rw-r--r-- 2 boincer umatlas    569687 Oct 13 03:32 input.tar.gz
[2025-10-13 07:14:35] -rw-r--r-- 1 boincer umatlas         0 Oct 13 03:32 boinc_lockfile
[2025-10-13 07:14:35] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 04:14 pandaJob.out
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas    972849 Oct 13 04:14 agis_schedconf.cvmfs.json
[2025-10-13 07:14:35] -rw-r--r-- 1 boincer umatlas      5951 Oct 13 07:13 init_data.xml
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas 188957727 Oct 13 07:13 HITS.46676269._095416.pool.root.1
[2025-10-13 07:14:35] -rw-r--r-- 1 boincer umatlas       530 Oct 13 07:13 boinc_task_state.xml
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas      1049 Oct 13 07:13 memory_monitor_summary.json
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas   1560580 Oct 13 07:13 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas    409556 Oct 13 07:13 log.46676269._095416.job.log.tgz.1
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas      7855 Oct 13 07:13 heartbeat.json
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas        96 Oct 13 07:14 pilot_heartbeat.json
[2025-10-13 07:14:35] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 07:14 boinc_mmap_file
[2025-10-13 07:14:35] -rw-r--r-- 1 boincer umatlas        28 Oct 13 07:14 wrapper_checkpoint.txt
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas      4821 Oct 13 07:14 pilotlog.txt
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas   1503918 Oct 13 07:14 log.46676269._095416.job.log.1
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas       357 Oct 13 07:14 output.list
[2025-10-13 07:14:35] -rw-r--r-- 1 boincer umatlas       620 Oct 13 07:14 runtime_log
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas   1935360 Oct 13 07:14 result.tar.gz
[2025-10-13 07:14:35] -rw-r--r-- 1 boincer umatlas      8789 Oct 13 07:14 runtime_log.err
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas       787 Oct 13 07:14 1ojMDmIyNS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPZmNDmvSTjgm.diag
[2025-10-13 07:14:35] -rw-r--r-- 1 boincer umatlas     23368 Oct 13 07:14 stderr.txt
[2025-10-13 07:14:35] HITS file was successfully produced:
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas 188957727 Oct 13 07:13 shared/HITS.pool.root.1
[2025-10-13 07:14:35]  *** Contents of shared directory: ***
[2025-10-13 07:14:35] total 402760
[2025-10-13 07:14:35] -rw-r--r-- 3 boincer umatlas 220930585 Oct 13 03:32 ATLAS.root_0
[2025-10-13 07:14:35] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 03:32 start_atlas.sh
[2025-10-13 07:14:35] -rw-r--r-- 2 boincer umatlas    569687 Oct 13 03:32 input.tar.gz
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas 188957727 Oct 13 07:13 HITS.pool.root.1
[2025-10-13 07:14:35] -rw------- 1 boincer umatlas   1935360 Oct 13 07:14 result.tar.gz
07:14:37 (9535): run_atlas exited; CPU time 82113.549453
07:14:37 (9535): called boinc_finish(0)

</stderr_txt>
]]>

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