Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:23:25 (3659004): wrapper (7.7.26015): starting
19:23:25 (3659004): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 19:23:25] Arguments: --nthreads 3
[2025-10-13 19:23:25] Threads: 3
[2025-10-13 19:23:25] Checking for CVMFS
[2025-10-13 19:23:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 19:23:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 19:23:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 19:23:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 19:23:25] 2.9.2.0 1839474 5978 83084 151668 1 56 23076067 36864000 0 130560 0 4792220 99.991 205215 803 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 19:23:25] CVMFS is ok
[2025-10-13 19:23:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 19:23:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 19:23:25] Further information can be found at the LHC@home message board.
[2025-10-13 19:23:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 19:23:25] Checking for apptainer binary...
[2025-10-13 19:23:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 19:23:25] Running /usr/bin/apptainer --version
[2025-10-13 19:23:25] apptainer version 1.4.1-1.1
[2025-10-13 19:23:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 19:23:25] thA371b
[2025-10-13 19:23:25] apptainer works
[2025-10-13 19:23:25] Set ATHENA_PROC_NUMBER=3
[2025-10-13 19:23:25] Set ATHENA_CORE_NUMBER=3
[2025-10-13 19:23:25] Starting ATLAS job with PandaID=6840970224
[2025-10-13 19:23:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 20:46:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 20:46:44] 2025-10-13 18:45:51,483 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 20:46:44] 2025-10-13 18:45:51,676 | INFO     | [job] retrieve thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:51,676 | INFO     | [job] queue monitor thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:51,707 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:51,913 | INFO     | [data] control thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:52,016 | INFO     | all job control threads have been joined
[2025-10-13 20:46:44] 2025-10-13 18:45:52,108 | INFO     | [payload] control thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:52,190 | INFO     | [payload] validate_post thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:52,310 | INFO     | [job] job monitor thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:52,560 | INFO     | [data] copytool_in thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:52,773 | INFO     | [payload] failed_post thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:53,017 | INFO     | [job] control thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:53,078 | INFO     | [job] validate thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:53,137 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:53,163 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:53,489 | INFO     | [data] copytool_out thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:45:54,677 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:46:01,266 | INFO     | job.realtimelogging is not enabled
[2025-10-13 20:46:44] 2025-10-13 18:46:02,272 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 20:46:44] 2025-10-13 18:46:21,504 | INFO     | PID=3662718 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 20:46:44] 2025-10-13 18:46:21,505 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 20:46:44] 2025-10-13 18:46:21,505 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 20:46:44] 2025-10-13 18:46:21,505 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 20:46:44] 2025-10-13 18:46:37,369 | INFO     | [monitor] cgroup control has ended
[2025-10-13 20:46:44] 2025-10-13 18:46:38,887 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140383849027392)>', '<ExcThread(monitor, started 140383044478720)>']
[2025-10-13 20:46:44] 2025-10-13 18:46:39,601 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 20:46:44] 2025-10-13 18:46:39,601 | INFO     | [monitor] control thread has ended
[2025-10-13 20:46:44] 2025-10-13 18:46:43,913 | INFO     | all workflow threads have been joined
[2025-10-13 20:46:44] 2025-10-13 18:46:43,914 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 20:46:44] 2025-10-13 18:46:43,914 | INFO     | traces error code: 0
[2025-10-13 20:46:44] 2025-10-13 18:46:43,914 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 20:46:44] 2025-10-13 18:46:43,965 [wrapper] ==== pilot stdout END ====
[2025-10-13 20:46:44] 2025-10-13 18:46:43,967 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 20:46:44] 2025-10-13 18:46:43,970 [wrapper] pilotpid: 3662718
[2025-10-13 20:46:44] 2025-10-13 18:46:43,972 [wrapper] Pilot exit status: 0
[2025-10-13 20:46:44] 2025-10-13 18:46:43,979 [wrapper] pandaids: 6840970224
[2025-10-13 20:46:44] 2025-10-13 18:46:43,995 [wrapper] cleanup supervisor_pilot 3681087 3662719
[2025-10-13 20:46:44] 2025-10-13 18:46:43,997 [wrapper] Test setup, not cleaning
[2025-10-13 20:46:44] 2025-10-13 18:46:43,999 [wrapper] apfmon messages muted
[2025-10-13 20:46:44] 2025-10-13 18:46:44,002 [wrapper] ==== wrapper stdout END ====
[2025-10-13 20:46:44] 2025-10-13 18:46:44,004 [wrapper] ==== wrapper stderr END ====
[2025-10-13 20:46:44]  *** Error codes and diagnostics ***
[2025-10-13 20:46:44]     "exeErrorCode": 0,
[2025-10-13 20:46:44]     "exeErrorDiag": "",
[2025-10-13 20:46:44]     "pilotErrorCode": 0,
[2025-10-13 20:46:44]     "pilotErrorDiag": "",
[2025-10-13 20:46:44]  *** Listing of results directory ***
[2025-10-13 20:46:44] total 413808
[2025-10-13 20:46:44] -rwx------ 1 boinc boinc     36292 Oct 13 02:02 runpilot2-wrapper.sh
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc      5112 Oct 13 02:02 queuedata.json
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc    557409 Oct 13 02:02 pilot3.tar.gz
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc       100 Oct 13 19:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 20:46:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 19:23 run_atlas
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc       105 Oct 13 19:23 job.xml
[2025-10-13 20:46:44] -rw-r--r-- 2 boinc boinc 220987066 Oct 13 19:23 EVNT.46676267._004675.pool.root.1
[2025-10-13 20:46:44] -rw-r--r-- 2 boinc boinc    569668 Oct 13 19:23 input.tar.gz
[2025-10-13 20:46:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:23 start_atlas.sh
[2025-10-13 20:46:44] drwxrwx--x 2 boinc boinc      4096 Oct 13 19:23 shared
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 19:23 boinc_setup_complete
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc      6440 Oct 13 19:23 init_data.xml
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 19:23 boinc_lockfile
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc      2549 Oct 13 19:23 pandaJob.out
[2025-10-13 20:46:44] -rw------- 1 boinc boinc    972791 Oct 13 19:23 agis_schedconf.cvmfs.json
[2025-10-13 20:46:44] -rw------- 1 boinc boinc   1560580 Oct 13 19:23 agis_ddmendpoints.agis.ALL.json
[2025-10-13 20:46:44] drwx------ 5 boinc boinc      4096 Oct 13 19:23 pilot3
[2025-10-13 20:46:44] -rw------- 1 boinc boinc 196946665 Oct 13 20:45 HITS.46676269._092644.pool.root.1
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc       529 Oct 13 20:45 boinc_task_state.xml
[2025-10-13 20:46:44] -rw------- 1 boinc boinc      1019 Oct 13 20:45 memory_monitor_summary.json
[2025-10-13 20:46:44] -rw------- 1 boinc boinc    240235 Oct 13 20:45 log.46676269._092644.job.log.tgz.1
[2025-10-13 20:46:44] -rw------- 1 boinc boinc      7765 Oct 13 20:45 heartbeat.json
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc      8192 Oct 13 20:46 boinc_mmap_file
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc        27 Oct 13 20:46 wrapper_checkpoint.txt
[2025-10-13 20:46:44] -rw------- 1 boinc boinc        95 Oct 13 20:46 pilot_heartbeat.json
[2025-10-13 20:46:44] -rw------- 1 boinc boinc      4824 Oct 13 20:46 pilotlog.txt
[2025-10-13 20:46:44] -rw------- 1 boinc boinc    724821 Oct 13 20:46 log.46676269._092644.job.log.1
[2025-10-13 20:46:44] -rw------- 1 boinc boinc       357 Oct 13 20:46 output.list
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc       620 Oct 13 20:46 runtime_log
[2025-10-13 20:46:44] -rw------- 1 boinc boinc    983040 Oct 13 20:46 result.tar.gz
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc      8782 Oct 13 20:46 runtime_log.err
[2025-10-13 20:46:44] -rw------- 1 boinc boinc       659 Oct 13 20:46 aFzLDmxBLS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm7JVMDmQ8bJ9m.diag
[2025-10-13 20:46:44] -rw-r--r-- 1 boinc boinc      6622 Oct 13 20:46 stderr.txt
[2025-10-13 20:46:44] HITS file was successfully produced:
[2025-10-13 20:46:44] -rw------- 1 boinc boinc 196946665 Oct 13 20:45 shared/HITS.pool.root.1
[2025-10-13 20:46:44]  *** Contents of shared directory: ***
[2025-10-13 20:46:44] total 409680
[2025-10-13 20:46:44] -rw-r--r-- 2 boinc boinc 220987066 Oct 13 19:23 ATLAS.root_0
[2025-10-13 20:46:44] -rw-r--r-- 2 boinc boinc    569668 Oct 13 19:23 input.tar.gz
[2025-10-13 20:46:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:23 start_atlas.sh
[2025-10-13 20:46:44] -rw------- 1 boinc boinc 196946665 Oct 13 20:45 HITS.pool.root.1
[2025-10-13 20:46:44] -rw------- 1 boinc boinc    983040 Oct 13 20:46 result.tar.gz
20:46:45 (3659004): run_atlas exited; CPU time 14144.454941
20:46:45 (3659004): called boinc_finish(0)

</stderr_txt>
]]>

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