Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:33:45 (1853406): wrapper (7.7.26015): starting
03:33:45 (1853406): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 03:33:45] Arguments: --nthreads 8
[2025-10-13 03:33:45] Threads: 8
[2025-10-13 03:33:45] Checking for CVMFS
[2025-10-13 03:33:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:33:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:33:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:33:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:33:45] 2.13.2.0 9460 35374 231888 151653 1 188 31917736 32935937 2765 16776704 0 104025366 99.706 79619445 30073 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 03:33:45] CVMFS is ok
[2025-10-13 03:33:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:33:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:33:45] Further information can be found at the LHC@home message board.
[2025-10-13 03:33:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:33:45] Checking for apptainer binary...
[2025-10-13 03:33:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:33:45] Running /usr/bin/apptainer --version
[2025-10-13 03:33:45] apptainer version 1.4.3-1.el9
[2025-10-13 03:33:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:33:45] c-4-11.aglt2.org
[2025-10-13 03:33:45] apptainer works
[2025-10-13 03:33:45] Set ATHENA_PROC_NUMBER=8
[2025-10-13 03:33:45] Set ATHENA_CORE_NUMBER=8
[2025-10-13 03:33:45] Starting ATLAS job with PandaID=6841068617
[2025-10-13 03:33:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 04:58:26]  *** The last 200 lines of the pilot log: ***
[2025-10-13 04:58:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 04:58:26]  replicas=None
[2025-10-13 04:58:26]  scope=mc23_13p6TeV
[2025-10-13 04:58:26]  status=None
[2025-10-13 04:58:26]  status_code=0
[2025-10-13 04:58:26]  storage_token=
[2025-10-13 04:58:26]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6841068617/log.46676269._092853.job.log.tgz.1
[2025-10-13 04:58:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/22/log.46676269._092853.job.log.tgz.1
[2025-10-13 04:58:26]  workdir=None
[2025-10-13 04:58:26] ]
[2025-10-13 04:58:26] 2025-10-13 08:57:48,473 | INFO     | transferring file log.46676269._092853.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6841068617/log.46676269._092853.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 04:58:26] 2025-10-13 08:57:48,473 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6841068617/log.46676269._092853.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._092853.job
[2025-10-13 04:58:26] 2025-10-13 08:57:48,488 | INFO     | adding to output.list: log.46676269._092853.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/22/log.46676269._092853.job.log.tg
[2025-10-13 04:58:26] 2025-10-13 08:57:48,489 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 04:58:26] 2025-10-13 08:57:48,489 | INFO     | summary of transferred files:
[2025-10-13 04:58:26] 2025-10-13 08:57:48,489 | INFO     |  -- lfn=log.46676269._092853.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 04:58:26] 2025-10-13 08:57:48,490 | INFO     | stage-out finished correctly
[2025-10-13 04:58:26] 2025-10-13 08:57:48,594 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 04:58:26] 2025-10-13 08:57:49,332 | INFO     | monitor loop #377: job 0:6841068617 is in state 'finished'
[2025-10-13 04:58:26] 2025-10-13 08:57:49,332 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:58:26] 2025-10-13 08:57:49,383 | INFO     | job 6841068617 has state=finished
[2025-10-13 04:58:26] 2025-10-13 08:57:49,384 | INFO     | preparing for final server update for job 6841068617 in state='finished'
[2025-10-13 04:58:26] 2025-10-13 08:57:49,384 | INFO     | this job has now completed (state=finished)
[2025-10-13 04:58:26] 2025-10-13 08:57:49,385 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 04:58:26] 2025-10-13 08:57:49,385 | INFO     | log transfer has been attempted: DONE
[2025-10-13 04:58:26] 2025-10-13 08:57:49,385 | INFO     | job 6841068617 has finished - writing final server update
[2025-10-13 04:58:26] 2025-10-13 08:57:49,385 | INFO     | total number of processed events: 400 (read)
[2025-10-13 04:58:26] 2025-10-13 08:57:49,386 | INFO     | executing command: lscpu
[2025-10-13 04:58:26] 2025-10-13 08:57:49,435 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 04:58:26] 2025-10-13 08:57:50,106 | INFO     | time since job start (5034s) is within the limit (172800.0s)
[2025-10-13 04:58:26] 2025-10-13 08:57:51,431 | INFO     | PID=1857106 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 04:58:26] 2025-10-13 08:57:51,431 | INFO     | .. there are 4 such processes running
[2025-10-13 04:58:26] 2025-10-13 08:57:51,835 | INFO     | monitor loop #378: job 0:6841068617 is in state 'finished'
[2025-10-13 04:58:26] 2025-10-13 08:57:51,835 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:58:26] 2025-10-13 08:57:52,432 | INFO     | time since job start (5036s) is within the limit (172800.0s)
[2025-10-13 04:58:26] 2025-10-13 08:57:52,936 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 04:58:26] 2025-10-13 08:57:52,943 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2880.067200000001
[2025-10-13 04:58:26] 2025-10-13 08:57:52,962 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841068617/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 04:58:26] 2025-10-13 08:57:52,963 | INFO     | extracted standard info from prmon json
[2025-10-13 04:58:26] 2025-10-13 08:57:52,963 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 04:58:26] 2025-10-13 08:57:52,963 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 04:58:26] 2025-10-13 08:57:52,964 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 04:58:26] 2025-10-13 08:57:52,964 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 04:58:26] 2025-10-13 08:57:52,966 | INFO     | fitting pss+swap vs Time
[2025-10-13 04:58:26] 2025-10-13 08:57:52,966 | INFO     | sum of square deviations: 136095575.0
[2025-10-13 04:58:26] 2025-10-13 08:57:52,967 | INFO     | sum of deviations: -4887149169.5
[2025-10-13 04:58:26] 2025-10-13 08:57:52,967 | INFO     | mean x: 1760343452.5
[2025-10-13 04:58:26] 2025-10-13 08:57:52,967 | INFO     | mean y: 2236104.2763157897
[2025-10-13 04:58:26] 2025-10-13 08:57:52,967 | INFO     | -- intersect: 63215614216.82801
[2025-10-13 04:58:26] 2025-10-13 08:57:52,967 | INFO     | intersect: 63215614216.82801
[2025-10-13 04:58:26] 2025-10-13 08:57:52,967 | INFO     | chi2: 0.029022937968348893
[2025-10-13 04:58:26] 2025-10-13 08:57:52,968 | INFO     | -- intersect: 63215614216.82801
[2025-10-13 04:58:26] 2025-10-13 08:57:52,968 | INFO     | current memory leak: -35.91 B/s (using 76 data points, chi2=0.03)
[2025-10-13 04:58:26] 2025-10-13 08:57:52,968 | INFO     | could have reported an average CPU frequency of 2850 MHz (6 samples)
[2025-10-13 04:58:26] 2025-10-13 08:57:52,968 | INFO     | ..............................
[2025-10-13 04:58:26] 2025-10-13 08:57:52,968 | INFO     | . Timing measurements:
[2025-10-13 04:58:26] 2025-10-13 08:57:52,969 | INFO     | . get job = 0 s
[2025-10-13 04:58:26] 2025-10-13 08:57:52,969 | INFO     | . initial setup = 2 s
[2025-10-13 04:58:26] 2025-10-13 08:57:52,969 | INFO     | . payload setup = 5 s
[2025-10-13 04:58:26] 2025-10-13 08:57:52,969 | INFO     | . stage-in = 0 s
[2025-10-13 04:58:26] 2025-10-13 08:57:52,969 | INFO     | . payload execution = 5007 s
[2025-10-13 04:58:26] 2025-10-13 08:57:52,969 | INFO     | . stage-out = 0 s
[2025-10-13 04:58:26] 2025-10-13 08:57:52,969 | INFO     | . log creation = 0 s
[2025-10-13 04:58:26] 2025-10-13 08:57:52,969 | INFO     | ..............................
[2025-10-13 04:58:26] 2025-10-13 08:57:53,075 | INFO     | 
[2025-10-13 04:58:26] 2025-10-13 08:57:53,075 | INFO     | job summary report
[2025-10-13 04:58:26] 2025-10-13 08:57:53,075 | INFO     | --------------------------------------------------
[2025-10-13 04:58:26] 2025-10-13 08:57:53,075 | INFO     | PanDA job id: 6841068617
[2025-10-13 04:58:26] 2025-10-13 08:57:53,076 | INFO     | task id: 46676269
[2025-10-13 04:58:26] 2025-10-13 08:57:53,076 | INFO     | errors: (none)
[2025-10-13 04:58:26] 2025-10-13 08:57:53,076 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 04:58:26] 2025-10-13 08:57:53,076 | INFO     | pilot state: finished 
[2025-10-13 04:58:26] 2025-10-13 08:57:53,076 | INFO     | transexitcode: 0
[2025-10-13 04:58:26] 2025-10-13 08:57:53,076 | INFO     | exeerrorcode: 0
[2025-10-13 04:58:26] 2025-10-13 08:57:53,076 | INFO     | exeerrordiag: 
[2025-10-13 04:58:26] 2025-10-13 08:57:53,076 | INFO     | exitcode: 0
[2025-10-13 04:58:26] 2025-10-13 08:57:53,076 | INFO     | exitmsg: OK
[2025-10-13 04:58:26] 2025-10-13 08:57:53,077 | INFO     | cpuconsumptiontime: 37168 s
[2025-10-13 04:58:26] 2025-10-13 08:57:53,077 | INFO     | nevents: 400
[2025-10-13 04:58:26] 2025-10-13 08:57:53,077 | INFO     | neventsw: 0
[2025-10-13 04:58:26] 2025-10-13 08:57:53,077 | INFO     | pid: 1864012
[2025-10-13 04:58:26] 2025-10-13 08:57:53,077 | INFO     | pgrp: 1864012
[2025-10-13 04:58:26] 2025-10-13 08:57:53,077 | INFO     | corecount: 8
[2025-10-13 04:58:26] 2025-10-13 08:57:53,077 | INFO     | event service: False
[2025-10-13 04:58:26] 2025-10-13 08:57:53,077 | INFO     | sizes: {0: 2348636, 1: 2348835, 5: 2349097, 12: 2349153, 5016: 2375539, 5017: 2384721, 5022: 2384859}
[2025-10-13 04:58:26] 2025-10-13 08:57:53,077 | INFO     | --------------------------------------------------
[2025-10-13 04:58:26] 2025-10-13 08:57:53,077 | INFO     | 
[2025-10-13 04:58:26] 2025-10-13 08:57:53,078 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 04:58:26] 2025-10-13 08:57:53,094 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,095 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,095 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,095 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,095 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,095 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,096 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,096 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,096 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,096 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,096 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,096 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,096 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,096 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,096 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,097 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,097 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,097 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 04:58:26] 2025-10-13 08:57:53,097 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,097 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 04:58:26] 2025-10-13 08:57:53,097 | INFO     | job 6841068617 has completed (purged errors)
[2025-10-13 04:58:26] 2025-10-13 08:57:53,097 | INFO     | overall cleanup function is called
[2025-10-13 04:58:26] 2025-10-13 08:57:54,105 | INFO     | --- collectZombieJob: --- 10, [1864012]
[2025-10-13 04:58:26] 2025-10-13 08:57:54,106 | INFO     | zombie collector waiting for pid 1864012
[2025-10-13 04:58:26] 2025-10-13 08:57:54,106 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 04:58:26] 2025-10-13 08:57:54,106 | INFO     | collected zombie processes
[2025-10-13 04:58:26] 2025-10-13 08:57:54,106 | INFO     | will attempt to kill all subprocesses of pid=1864012
[2025-10-13 04:58:26] 2025-10-13 08:57:54,361 | INFO     | process IDs to be killed: [1864012] (in reverse order)
[2025-10-13 04:58:26] 2025-10-13 08:57:54,427 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 04:58:26] 2025-10-13 08:57:54,427 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 04:58:26] 2025-10-13 08:57:54,434 | INFO     | did not find any defunct processes belonging to 1864012
[2025-10-13 04:58:26] 2025-10-13 08:57:54,441 | INFO     | did not find any defunct processes belonging to 1864012
[2025-10-13 04:58:26] 2025-10-13 08:57:54,441 | INFO     | ready for new job
[2025-10-13 04:58:26] 2025-10-13 08:57:54,442 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 04:58:26] 2025-10-13 08:57:54,443 | INFO     | ***************************************
[2025-10-13 04:58:26] 2025-10-13 08:57:54,443 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 04:58:26] 2025-10-13 08:57:54,443 | INFO     | ***************************************
[2025-10-13 04:58:26] 2025-10-13 08:57:54,444 | INFO     | 
[2025-10-13 04:58:26] 2025-10-13 08:57:54,457 | INFO     | architecture information:
[2025-10-13 04:58:26] 2025-10-13 08:57:54,458 | INFO     | executing command: cat /etc/os-release
[2025-10-13 04:58:26] 2025-10-13 08:57:54,471 | INFO     | cat /etc/os-release:
[2025-10-13 04:58:26] NAME="CentOS Linux"
[2025-10-13 04:58:26] VERSION="7 (Core)"
[2025-10-13 04:58:26] ID="centos"
[2025-10-13 04:58:26] ID_LIKE="rhel fedora"
[2025-10-13 04:58:26] VERSION_ID="7"
[2025-10-13 04:58:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 04:58:26] ANSI_COLOR="0;31"
[2025-10-13 04:58:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 04:58:26] HOME_URL="https://www.centos.org/"
[2025-10-13 04:58:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 04:58:26] 
[2025-10-13 04:58:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 04:58:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 04:58:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 04:58:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 04:58:26] 
[2025-10-13 04:58:26] 2025-10-13 08:57:54,472 | INFO     | ***************************************
[2025-10-13 04:58:26] 2025-10-13 08:57:54,974 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 04:58:26] 2025-10-13 08:57:54,987 | INFO     | sufficient remaining disk space (73986473984 B)
[2025-10-13 04:58:26] 2025-10-13 08:57:54,988 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 04:58:26] 2025-10-13 08:57:54,988 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 04:58:26] 2025-10-13 08:57:54,988 | INFO     | update_server=False
[2025-10-13 04:58:26] 2025-10-13 08:57:54,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 04:58:26] 2025-10-13 08:57:54,988 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:58:26] 2025-10-13 08:57:54,988 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 04:58:26] 2025-10-13 08:57:54,989 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 04:58:26] 2025-10-13 08:57:55,223 | INFO     | all payload control threads have been joined
[2025-10-13 04:58:26] 2025-10-13 08:57:55,343 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:58:26] 2025-10-13 08:57:55,343 | INFO     | aborting loop
[2025-10-13 04:58:26] 2025-10-13 08:57:55,720 | INFO     | all job control threads have been joined
[2025-10-13 04:58:26] 2025-10-13 08:57:55,826 | INFO     | all data control threads have been joined
[2025-10-13 04:58:26] 2025-10-13 08:57:55,989 | INFO     | [job] retrieve thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:55,994 | INFO     | [job] queue monitor thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:56,002 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:56,229 | INFO     | [payload] control thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:56,346 | INFO     | [job] job monitor thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:56,506 | INFO     | [payload] validate_post thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:56,611 | INFO     | [data] copytool_in thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:56,651 | INFO     | [payload] failed_post thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:56,726 | INFO     | [job] control thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:56,751 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:56,832 | INFO     | [data] control thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:56,922 | INFO     | [job] validate thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:56,995 | INFO     | [data] copytool_out thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:57,160 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:57,395 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:57:58,995 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 04:58:26] 2025-10-13 08:58:03,296 | INFO     | [monitor] cgroup control has ended
[2025-10-13 04:58:26] 2025-10-13 08:58:03,860 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139899575605056)>', '<ExcThread(monitor, started 139898937919232)>']
[2025-10-13 04:58:26] 2025-10-13 08:58:08,886 | INFO     | all workflow threads have been joined
[2025-10-13 04:58:26] 2025-10-13 08:58:08,886 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 04:58:26] 2025-10-13 08:58:08,886 | INFO     | traces error code: 0
[2025-10-13 04:58:26] 2025-10-13 08:58:08,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 04:58:26] 2025-10-13 08:58:25,815 | INFO     | PID=1857106 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 04:58:26] 2025-10-13 08:58:25,816 | INFO     | .. there are 4 such processes running
[2025-10-13 04:58:26] 2025-10-13 08:58:25,817 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 04:58:26] 2025-10-13 08:58:25,817 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 04:58:26] 2025-10-13 08:58:25,817 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 04:58:26] 2025-10-13 08:58:25,817 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 04:58:26] 2025-10-13 08:58:25,817 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 04:58:26] 2025-10-13 08:58:25,817 | INFO     | [monitor] control thread has ended
[2025-10-13 04:58:26] 2025-10-13 08:58:25,932 [wrapper] ==== pilot stdout END ====
[2025-10-13 04:58:26] 2025-10-13 08:58:25,934 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 04:58:26] 2025-10-13 08:58:25,937 [wrapper] pilotpid: 1857106
[2025-10-13 04:58:26] 2025-10-13 08:58:25,939 [wrapper] Pilot exit status: 0
[2025-10-13 04:58:26] 2025-10-13 08:58:25,948 [wrapper] pandaids: 6841068617
[2025-10-13 04:58:26] 2025-10-13 08:58:25,994 [wrapper] cleanup supervisor_pilot 2015743 1857107
[2025-10-13 04:58:26] 2025-10-13 08:58:25,997 [wrapper] Test setup, not cleaning
[2025-10-13 04:58:26] 2025-10-13 08:58:25,999 [wrapper] apfmon messages muted
[2025-10-13 04:58:26] 2025-10-13 08:58:26,002 [wrapper] ==== wrapper stdout END ====
[2025-10-13 04:58:26] 2025-10-13 08:58:26,004 [wrapper] ==== wrapper stderr END ====
[2025-10-13 04:58:26]  *** Error codes and diagnostics ***
[2025-10-13 04:58:26]     "exeErrorCode": 0,
[2025-10-13 04:58:26]     "exeErrorDiag": "",
[2025-10-13 04:58:26]     "pilotErrorCode": 0,
[2025-10-13 04:58:26]     "pilotErrorDiag": "",
[2025-10-13 04:58:26]  *** Listing of results directory ***
[2025-10-13 04:58:26] total 413384
[2025-10-13 04:58:26] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 20:02 pilot3.tar.gz
[2025-10-13 04:58:26] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 20:06 queuedata.json
[2025-10-13 04:58:26] -rwx------. 1 boincer umatlas     36292 Oct 12 20:08 runpilot2-wrapper.sh
[2025-10-13 04:58:26] -rw-r--r--. 1 boincer umatlas       100 Oct 13 03:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 04:58:26] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 03:33 run_atlas
[2025-10-13 04:58:26] -rw-r--r--. 1 boincer umatlas       105 Oct 13 03:33 job.xml
[2025-10-13 04:58:26] -rw-r--r--. 2 boincer umatlas 219311140 Oct 13 03:33 EVNT.46676267._001945.pool.root.1
[2025-10-13 04:58:26] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 03:33 start_atlas.sh
[2025-10-13 04:58:26] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 03:33 shared
[2025-10-13 04:58:26] -rw-r--r--. 2 boincer umatlas    569685 Oct 13 03:33 input.tar.gz
[2025-10-13 04:58:26] -rw-r--r--. 1 boincer umatlas         0 Oct 13 03:33 boinc_lockfile
[2025-10-13 04:58:26] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 03:33 pandaJob.out
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas    972849 Oct 13 03:33 agis_schedconf.cvmfs.json
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas   1560580 Oct 13 03:33 agis_ddmendpoints.agis.ALL.json
[2025-10-13 04:58:26] drwx------. 5 boincer umatlas      4096 Oct 13 03:33 pilot3
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas 197946034 Oct 13 04:57 HITS.46676269._092853.pool.root.1
[2025-10-13 04:58:26] -rw-r--r--. 1 boincer umatlas       529 Oct 13 04:57 boinc_task_state.xml
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas      1033 Oct 13 04:57 memory_monitor_summary.json
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas    335737 Oct 13 04:57 log.46676269._092853.job.log.tgz.1
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas      7810 Oct 13 04:57 heartbeat.json
[2025-10-13 04:58:26] -rw-r--r--. 1 boincer umatlas      6661 Oct 13 04:58 init_data.xml
[2025-10-13 04:58:26] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 04:58 boinc_mmap_file
[2025-10-13 04:58:26] -rw-r--r--. 1 boincer umatlas        27 Oct 13 04:58 wrapper_checkpoint.txt
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas        95 Oct 13 04:58 pilot_heartbeat.json
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas       892 Oct 13 04:58 pilotlog.txt
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas    742900 Oct 13 04:58 log.46676269._092853.job.log.1
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas       357 Oct 13 04:58 output.list
[2025-10-13 04:58:26] -rw-r--r--. 1 boincer umatlas       620 Oct 13 04:58 runtime_log
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas   1095680 Oct 13 04:58 result.tar.gz
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas       648 Oct 13 04:58 y4lKDmdILS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmk9lNDmTHzVTn.diag
[2025-10-13 04:58:26] -rw-r--r--. 1 boincer umatlas      8693 Oct 13 04:58 runtime_log.err
[2025-10-13 04:58:26] -rw-r--r--. 1 boincer umatlas     21908 Oct 13 04:58 stderr.txt
[2025-10-13 04:58:26] HITS file was successfully produced:
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas 197946034 Oct 13 04:57 shared/HITS.pool.root.1
[2025-10-13 04:58:26]  *** Contents of shared directory: ***
[2025-10-13 04:58:26] total 409132
[2025-10-13 04:58:26] -rw-r--r--. 2 boincer umatlas 219311140 Oct 13 03:33 ATLAS.root_0
[2025-10-13 04:58:26] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 03:33 start_atlas.sh
[2025-10-13 04:58:26] -rw-r--r--. 2 boincer umatlas    569685 Oct 13 03:33 input.tar.gz
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas 197946034 Oct 13 04:57 HITS.pool.root.1
[2025-10-13 04:58:26] -rw-------. 1 boincer umatlas   1095680 Oct 13 04:58 result.tar.gz
04:58:27 (1853406): run_atlas exited; CPU time 37297.695266
04:58:27 (1853406): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN