Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:31:33 (1756503): wrapper (7.7.26015): starting
04:31:33 (1756503): wrapper: running run_atlas (--nthreads 11)
[2025-10-13 04:31:33] Arguments: --nthreads 11
[2025-10-13 04:31:33] Threads: 11
[2025-10-13 04:31:33] Checking for CVMFS
[2025-10-13 04:31:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:31:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:31:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:31:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:31:33] 2.13.2.0 2216807 130445 422004 151654 3 57 36180698 40960001 1219 16776704 30 270090443 99.729 199506329 21781 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 04:31:33] CVMFS is ok
[2025-10-13 04:31:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:31:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:31:33] Further information can be found at the LHC@home message board.
[2025-10-13 04:31:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:31:33] Checking for apptainer binary...
[2025-10-13 04:31:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:31:33] Running /usr/bin/apptainer --version
[2025-10-13 04:31:33] apptainer version 1.4.3-1.el9
[2025-10-13 04:31:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:31:33] c7-11-11.aglt2.org
[2025-10-13 04:31:33] apptainer works
[2025-10-13 04:31:33] Set ATHENA_PROC_NUMBER=11
[2025-10-13 04:31:33] Set ATHENA_CORE_NUMBER=11
[2025-10-13 04:31:33] Starting ATLAS job with PandaID=6840970385
[2025-10-13 04:31:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:07:49]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:07:49]  protocol_id=None
[2025-10-13 05:07:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 05:07:49]  replicas=None
[2025-10-13 05:07:49]  scope=mc23_13p6TeV
[2025-10-13 05:07:49]  status=None
[2025-10-13 05:07:49]  status_code=0
[2025-10-13 05:07:49]  storage_token=
[2025-10-13 05:07:49]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6840970385/log.46676269._092722.job.log.tgz.1
[2025-10-13 05:07:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/cd/log.46676269._092722.job.log.tgz.1
[2025-10-13 05:07:49]  workdir=None
[2025-10-13 05:07:49] ]
[2025-10-13 05:07:49] 2025-10-13 09:07:02,994 | INFO     | transferring file log.46676269._092722.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6840970385/log.46676269._092722.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 05:07:49] 2025-10-13 09:07:02,994 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6840970385/log.46676269._092722.job.log.tgz.1 /tmp/boinchome/slots/3/log.46676269._092722.job
[2025-10-13 05:07:49] 2025-10-13 09:07:03,009 | INFO     | adding to output.list: log.46676269._092722.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/cd/log.46676269._092722.job.log.tg
[2025-10-13 05:07:49] 2025-10-13 09:07:03,009 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:07:49] 2025-10-13 09:07:03,009 | INFO     | summary of transferred files:
[2025-10-13 05:07:49] 2025-10-13 09:07:03,009 | INFO     |  -- lfn=log.46676269._092722.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:07:49] 2025-10-13 09:07:03,009 | INFO     | stage-out finished correctly
[2025-10-13 05:07:49] 2025-10-13 09:07:03,488 | INFO     | time since job start (2122s) is within the limit (172800.0s)
[2025-10-13 05:07:49] 2025-10-13 09:07:04,607 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:07:49] 2025-10-13 09:07:05,494 | INFO     | time since job start (2124s) is within the limit (172800.0s)
[2025-10-13 05:07:49] 2025-10-13 09:07:06,959 | INFO     | job 6840970385 has state=finished
[2025-10-13 05:07:49] 2025-10-13 09:07:06,959 | INFO     | preparing for final server update for job 6840970385 in state='finished'
[2025-10-13 05:07:49] 2025-10-13 09:07:06,960 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:07:49] 2025-10-13 09:07:06,960 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:07:49] 2025-10-13 09:07:06,960 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:07:49] 2025-10-13 09:07:06,960 | INFO     | job 6840970385 has finished - writing final server update
[2025-10-13 05:07:49] 2025-10-13 09:07:06,960 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:07:49] 2025-10-13 09:07:06,961 | INFO     | executing command: lscpu
[2025-10-13 05:07:49] 2025-10-13 09:07:07,010 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:07:49] 2025-10-13 09:07:07,499 | INFO     | time since job start (2126s) is within the limit (172800.0s)
[2025-10-13 05:07:49] 2025-10-13 09:07:07,887 | WARNING  | process 1769046 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 05:07:49] 2025-10-13 09:07:07,888 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6840970385/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:07:49] 2025-10-13 09:07:08,054 | INFO     | number of running child processes to parent process 1769046: 1
[2025-10-13 05:07:49] 2025-10-13 09:07:08,054 | INFO     | maximum number of monitored processes: 6
[2025-10-13 05:07:49] 2025-10-13 09:07:09,506 | INFO     | time since job start (2128s) is within the limit (172800.0s)
[2025-10-13 05:07:49] 2025-10-13 09:07:09,960 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 05:07:49] 2025-10-13 09:07:09,976 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3054.1893437499984
[2025-10-13 05:07:49] 2025-10-13 09:07:09,983 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6840970385/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:07:49] 2025-10-13 09:07:09,983 | INFO     | extracted standard info from prmon json
[2025-10-13 05:07:49] 2025-10-13 09:07:09,984 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:07:49] 2025-10-13 09:07:09,984 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:07:49] 2025-10-13 09:07:09,984 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:07:49] 2025-10-13 09:07:09,984 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:07:49] 2025-10-13 09:07:09,985 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:07:49] 2025-10-13 09:07:09,985 | INFO     | sum of square deviations: 6798267.0
[2025-10-13 05:07:49] 2025-10-13 09:07:09,985 | INFO     | sum of deviations: 92905135.0
[2025-10-13 05:07:49] 2025-10-13 09:07:09,985 | INFO     | mean x: 1760345452.5
[2025-10-13 05:07:49] 2025-10-13 09:07:09,985 | INFO     | mean y: 2541600.9285714286
[2025-10-13 05:07:49] 2025-10-13 09:07:09,985 | INFO     | -- intersect: -24054344059.95362
[2025-10-13 05:07:49] 2025-10-13 09:07:09,985 | INFO     | intersect: -24054344059.95362
[2025-10-13 05:07:49] 2025-10-13 09:07:09,985 | INFO     | chi2: 0.008533173687731719
[2025-10-13 05:07:49] 2025-10-13 09:07:09,985 | INFO     | -- intersect: -24054344059.95362
[2025-10-13 05:07:49] 2025-10-13 09:07:09,985 | INFO     | current memory leak: 13.67 B/s (using 28 data points, chi2=0.01)
[2025-10-13 05:07:49] 2025-10-13 09:07:09,985 | INFO     | could have reported an average CPU frequency of 3067 MHz (5 samples)
[2025-10-13 05:07:49] 2025-10-13 09:07:09,985 | INFO     | ..............................
[2025-10-13 05:07:49] 2025-10-13 09:07:09,986 | INFO     | . Timing measurements:
[2025-10-13 05:07:49] 2025-10-13 09:07:09,986 | INFO     | . get job = 0 s
[2025-10-13 05:07:49] 2025-10-13 09:07:09,986 | INFO     | . initial setup = 2 s
[2025-10-13 05:07:49] 2025-10-13 09:07:09,986 | INFO     | . payload setup = 4 s
[2025-10-13 05:07:49] 2025-10-13 09:07:09,986 | INFO     | . stage-in = 0 s
[2025-10-13 05:07:49] 2025-10-13 09:07:09,986 | INFO     | . payload execution = 2098 s
[2025-10-13 05:07:49] 2025-10-13 09:07:09,986 | INFO     | . stage-out = 0 s
[2025-10-13 05:07:49] 2025-10-13 09:07:09,986 | INFO     | . log creation = 0 s
[2025-10-13 05:07:49] 2025-10-13 09:07:09,986 | INFO     | ..............................
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | 
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | job summary report
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | --------------------------------------------------
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | PanDA job id: 6840970385
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | task id: 46676269
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | errors: (none)
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | pilot state: finished 
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | transexitcode: 0
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | exeerrorcode: 0
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | exeerrordiag: 
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | exitcode: 0
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | exitmsg: OK
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | cpuconsumptiontime: 20041 s
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | nevents: 400
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | neventsw: 0
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | pid: 1769046
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | pgrp: 1769046
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | corecount: 11
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | event service: False
[2025-10-13 05:07:49] 2025-10-13 09:07:10,040 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 2106: 2374268, 2107: 2383266, 2109: 2383322, 2114: 2383676}
[2025-10-13 05:07:49] 2025-10-13 09:07:10,041 | INFO     | --------------------------------------------------
[2025-10-13 05:07:49] 2025-10-13 09:07:10,041 | INFO     | 
[2025-10-13 05:07:49] 2025-10-13 09:07:10,041 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-13 05:07:49] 2025-10-13 09:07:10,055 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,055 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,055 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | job 6840970385 has completed (purged errors)
[2025-10-13 05:07:49] 2025-10-13 09:07:10,056 | INFO     | overall cleanup function is called
[2025-10-13 05:07:49] 2025-10-13 09:07:11,064 | INFO     | --- collectZombieJob: --- 10, [1769046]
[2025-10-13 05:07:49] 2025-10-13 09:07:11,064 | INFO     | zombie collector waiting for pid 1769046
[2025-10-13 05:07:49] 2025-10-13 09:07:11,064 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:07:49] 2025-10-13 09:07:11,064 | INFO     | collected zombie processes
[2025-10-13 05:07:49] 2025-10-13 09:07:11,064 | INFO     | will attempt to kill all subprocesses of pid=1769046
[2025-10-13 05:07:49] 2025-10-13 09:07:11,235 | INFO     | process IDs to be killed: [1769046] (in reverse order)
[2025-10-13 05:07:49] 2025-10-13 09:07:11,303 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:07:49] 2025-10-13 09:07:11,304 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:07:49] 2025-10-13 09:07:11,311 | INFO     | did not find any defunct processes belonging to 1769046
[2025-10-13 05:07:49] 2025-10-13 09:07:11,317 | INFO     | did not find any defunct processes belonging to 1769046
[2025-10-13 05:07:49] 2025-10-13 09:07:11,317 | INFO     | ready for new job
[2025-10-13 05:07:49] 2025-10-13 09:07:11,317 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:07:49] 2025-10-13 09:07:11,318 | INFO     | ***************************************
[2025-10-13 05:07:49] 2025-10-13 09:07:11,318 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:07:49] 2025-10-13 09:07:11,318 | INFO     | ***************************************
[2025-10-13 05:07:49] 2025-10-13 09:07:11,318 | INFO     | 
[2025-10-13 05:07:49] 2025-10-13 09:07:11,334 | INFO     | architecture information:
[2025-10-13 05:07:49] 2025-10-13 09:07:11,334 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:07:49] 2025-10-13 09:07:11,346 | INFO     | cat /etc/os-release:
[2025-10-13 05:07:49] NAME="CentOS Linux"
[2025-10-13 05:07:49] VERSION="7 (Core)"
[2025-10-13 05:07:49] ID="centos"
[2025-10-13 05:07:49] ID_LIKE="rhel fedora"
[2025-10-13 05:07:49] VERSION_ID="7"
[2025-10-13 05:07:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:07:49] ANSI_COLOR="0;31"
[2025-10-13 05:07:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:07:49] HOME_URL="https://www.centos.org/"
[2025-10-13 05:07:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:07:49] 
[2025-10-13 05:07:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:07:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:07:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:07:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:07:49] 
[2025-10-13 05:07:49] 2025-10-13 09:07:11,346 | INFO     | ***************************************
[2025-10-13 05:07:49] 2025-10-13 09:07:11,849 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-13 05:07:49] 2025-10-13 09:07:11,860 | INFO     | sufficient remaining disk space (83537952768 B)
[2025-10-13 05:07:49] 2025-10-13 09:07:11,860 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:07:49] 2025-10-13 09:07:11,860 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:07:49] 2025-10-13 09:07:11,860 | INFO     | update_server=False
[2025-10-13 05:07:49] 2025-10-13 09:07:11,860 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:07:49] 2025-10-13 09:07:11,861 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:07:49] 2025-10-13 09:07:11,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:07:49] 2025-10-13 09:07:11,861 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:07:49] 2025-10-13 09:07:11,861 | INFO     | aborting loop
[2025-10-13 05:07:49] 2025-10-13 09:07:12,530 | INFO     | all data control threads have been joined
[2025-10-13 05:07:49] 2025-10-13 09:07:12,866 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:12,866 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:12,867 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:12,995 | INFO     | all job control threads have been joined
[2025-10-13 05:07:49] 2025-10-13 09:07:13,195 | INFO     | all payload control threads have been joined
[2025-10-13 05:07:49] 2025-10-13 09:07:13,485 | INFO     | [job] validate thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:13,534 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:13,536 | INFO     | [data] control thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:13,774 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:13,825 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:13,866 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:13,908 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:14,001 | INFO     | [job] control thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:14,056 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:14,200 | INFO     | [payload] control thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:14,295 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:14,373 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:15,170 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:07:49] 2025-10-13 09:07:19,176 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:07:49] 2025-10-13 09:07:42,797 | INFO     | PID=1760624 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:07:49] 2025-10-13 09:07:42,797 | INFO     | .. there are 5 such processes running
[2025-10-13 05:07:49] 2025-10-13 09:07:42,797 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:07:49] 2025-10-13 09:07:42,797 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:07:49] 2025-10-13 09:07:42,797 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:07:49] 2025-10-13 09:07:43,864 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:07:49] 2025-10-13 09:07:44,360 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140020831954752)>', '<ExcThread(monitor, started 140020178458368)>']
[2025-10-13 05:07:49] 2025-10-13 09:07:44,807 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:07:49] 2025-10-13 09:07:44,808 | INFO     | [monitor] control thread has ended
[2025-10-13 05:07:49] 2025-10-13 09:07:49,385 | INFO     | all workflow threads have been joined
[2025-10-13 05:07:49] 2025-10-13 09:07:49,385 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:07:49] 2025-10-13 09:07:49,386 | INFO     | traces error code: 0
[2025-10-13 05:07:49] 2025-10-13 09:07:49,386 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:07:49] 2025-10-13 09:07:49,459 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:07:49] 2025-10-13 09:07:49,461 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:07:49] 2025-10-13 09:07:49,463 [wrapper] pilotpid: 1760624
[2025-10-13 05:07:49] 2025-10-13 09:07:49,465 [wrapper] Pilot exit status: 0
[2025-10-13 05:07:49] 2025-10-13 09:07:49,474 [wrapper] pandaids: 6840970385
[2025-10-13 05:07:49] 2025-10-13 09:07:49,523 [wrapper] cleanup supervisor_pilot 1840163 1760625
[2025-10-13 05:07:49] 2025-10-13 09:07:49,525 [wrapper] Test setup, not cleaning
[2025-10-13 05:07:49] 2025-10-13 09:07:49,527 [wrapper] apfmon messages muted
[2025-10-13 05:07:49] 2025-10-13 09:07:49,529 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:07:49] 2025-10-13 09:07:49,531 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:07:49]  *** Error codes and diagnostics ***
[2025-10-13 05:07:49]     "exeErrorCode": 0,
[2025-10-13 05:07:49]     "exeErrorDiag": "",
[2025-10-13 05:07:49]     "pilotErrorCode": 0,
[2025-10-13 05:07:49]     "pilotErrorDiag": "",
[2025-10-13 05:07:49]  *** Listing of results directory ***
[2025-10-13 05:07:49] total 407620
[2025-10-13 05:07:49] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 20:02 queuedata.json
[2025-10-13 05:07:49] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 20:02 pilot3.tar.gz
[2025-10-13 05:07:49] -rwx------. 1 boincer umatlas     36292 Oct 12 20:02 runpilot2-wrapper.sh
[2025-10-13 05:07:49] -rw-r--r--. 1 boincer umatlas       100 Oct 13 04:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:07:49] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 04:31 run_atlas
[2025-10-13 05:07:49] -rw-r--r--. 1 boincer umatlas       105 Oct 13 04:31 job.xml
[2025-10-13 05:07:49] -rw-r--r--. 2 boincer umatlas 219007497 Oct 13 04:31 EVNT.46676267._004678.pool.root.1
[2025-10-13 05:07:49] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 04:31 start_atlas.sh
[2025-10-13 05:07:49] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 04:31 shared
[2025-10-13 05:07:49] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 04:31 input.tar.gz
[2025-10-13 05:07:49] -rw-r--r--. 1 boincer umatlas         0 Oct 13 04:31 boinc_lockfile
[2025-10-13 05:07:49] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 04:31 pandaJob.out
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas    972857 Oct 13 04:31 agis_schedconf.cvmfs.json
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas   1560580 Oct 13 04:31 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:07:49] drwx------. 5 boincer umatlas      4096 Oct 13 04:31 pilot3
[2025-10-13 05:07:49] -rw-r--r--. 1 boincer umatlas      6900 Oct 13 05:01 init_data.xml
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas 193145011 Oct 13 05:06 HITS.46676269._092722.pool.root.1
[2025-10-13 05:07:49] -rw-r--r--. 1 boincer umatlas       529 Oct 13 05:06 boinc_task_state.xml
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas      1022 Oct 13 05:06 memory_monitor_summary.json
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas    326747 Oct 13 05:07 log.46676269._092722.job.log.tgz.1
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas        95 Oct 13 05:07 pilot_heartbeat.json
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas      7763 Oct 13 05:07 heartbeat.json
[2025-10-13 05:07:49] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 05:07 boinc_mmap_file
[2025-10-13 05:07:49] -rw-r--r--. 1 boincer umatlas        27 Oct 13 05:07 wrapper_checkpoint.txt
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas      4823 Oct 13 05:07 pilotlog.txt
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas    346203 Oct 13 05:07 log.46676269._092722.job.log.1
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas       357 Oct 13 05:07 output.list
[2025-10-13 05:07:49] -rw-r--r--. 1 boincer umatlas       620 Oct 13 05:07 runtime_log
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas    696320 Oct 13 05:07 result.tar.gz
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas       650 Oct 13 05:07 UO3LDm3BLS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmkKVMDmHKlKTn.diag
[2025-10-13 05:07:49] -rw-r--r--. 1 boincer umatlas      8705 Oct 13 05:07 runtime_log.err
[2025-10-13 05:07:49] -rw-r--r--. 1 boincer umatlas     21796 Oct 13 05:07 stderr.txt
[2025-10-13 05:07:49] HITS file was successfully produced:
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas 193145011 Oct 13 05:06 shared/HITS.pool.root.1
[2025-10-13 05:07:49]  *** Contents of shared directory: ***
[2025-10-13 05:07:49] total 403760
[2025-10-13 05:07:49] -rw-r--r--. 2 boincer umatlas 219007497 Oct 13 04:31 ATLAS.root_0
[2025-10-13 05:07:49] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 04:31 start_atlas.sh
[2025-10-13 05:07:49] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 04:31 input.tar.gz
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas 193145011 Oct 13 05:06 HITS.pool.root.1
[2025-10-13 05:07:49] -rw-------. 1 boincer umatlas    696320 Oct 13 05:07 result.tar.gz
05:07:51 (1756503): run_atlas exited; CPU time 20047.531013
05:07:51 (1756503): called boinc_finish(0)

</stderr_txt>
]]>

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