Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:42:33 (129888): wrapper (7.7.26015): starting
23:42:33 (129888): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 23:42:33] Arguments: --nthreads 6
[2025-10-13 23:42:33] Threads: 6
[2025-10-13 23:42:33] Checking for CVMFS
[2025-10-13 23:42:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 23:42:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 23:42:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 23:42:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 23:42:34] 2.12.7.0 249871 7445 94680 151664 0 57 14069649 20971521 929 130560 0 12668132 99.996 256729 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 23:42:34] CVMFS is ok
[2025-10-13 23:42:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 23:42:34] Checking for apptainer binary...
[2025-10-13 23:42:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 23:42:34] Running /usr/bin/apptainer --version
[2025-10-13 23:42:34] apptainer version 1.4.0-1.el9
[2025-10-13 23:42:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 23:42:34] testio005
[2025-10-13 23:42:34] apptainer works
[2025-10-13 23:42:34] Set ATHENA_PROC_NUMBER=6
[2025-10-13 23:42:34] Set ATHENA_CORE_NUMBER=6
[2025-10-13 23:42:34] Starting ATLAS job with PandaID=6841405507
[2025-10-13 23:42:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 01:17:02]  *** The last 200 lines of the pilot log: ***
[2025-10-14 01:17:02] 2025-10-13 16:15:11,009 | INFO     | time since job start (5544s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:13,014 | INFO     | time since job start (5546s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:15,020 | INFO     | time since job start (5548s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:17,024 | INFO     | time since job start (5550s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:19,029 | INFO     | time since job start (5552s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:21,035 | INFO     | time since job start (5554s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:23,040 | INFO     | time since job start (5556s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:24,138 | INFO     | PID=133683 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 01:17:02] 2025-10-13 16:15:24,139 | INFO     | .. there are 2 such processes running
[2025-10-14 01:17:02] 2025-10-13 16:15:25,139 | INFO     | time since job start (5558s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:27,144 | INFO     | time since job start (5560s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:29,150 | INFO     | time since job start (5562s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:31,155 | INFO     | time since job start (5564s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:33,161 | INFO     | time since job start (5566s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:35,166 | INFO     | time since job start (5568s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:37,172 | INFO     | time since job start (5570s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:39,177 | INFO     | time since job start (5572s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:41,183 | INFO     | time since job start (5574s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:43,188 | INFO     | time since job start (5576s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:45,194 | INFO     | time since job start (5578s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:45,194 | INFO     | 5585s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-14 01:17:02] 2025-10-13 16:15:46,295 | INFO     | PID=133683 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 01:17:02] 2025-10-13 16:15:46,295 | INFO     | .. there are 2 such processes running
[2025-10-14 01:17:02] 2025-10-13 16:15:47,295 | INFO     | time since job start (5580s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:49,300 | INFO     | time since job start (5582s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:51,306 | INFO     | time since job start (5584s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:53,311 | INFO     | time since job start (5586s) is within the limit (172800.0s)
[2025-10-14 01:17:02] 2025-10-13 16:15:53,805 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 01:17:02] 2025-10-13 16:15:53,812 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3318.9295625
[2025-10-14 01:17:02] 2025-10-13 16:15:53,815 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6841405507/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 01:17:02] 2025-10-13 16:15:53,816 | INFO     | extracted standard info from prmon json
[2025-10-14 01:17:02] 2025-10-13 16:15:53,816 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 01:17:02] 2025-10-13 16:15:53,816 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 01:17:02] 2025-10-13 16:15:53,816 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 01:17:02] 2025-10-13 16:15:53,817 | INFO     | sufficient remaining disk space (98054438912 B)
[2025-10-14 01:17:02] 2025-10-13 16:15:53,817 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 01:17:02] 2025-10-13 16:15:53,817 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-14 01:17:02] 2025-10-13 16:15:53,819 | INFO     | fitting pss+swap vs Time
[2025-10-14 01:17:02] 2025-10-13 16:15:53,820 | INFO     | sum of square deviations: 177275882.0
[2025-10-14 01:17:02] 2025-10-13 16:15:53,820 | INFO     | sum of deviations: -13274160651.0
[2025-10-14 01:17:02] 2025-10-13 16:15:53,820 | INFO     | mean x: 1760369396.0
[2025-10-14 01:17:02] 2025-10-13 16:15:53,820 | INFO     | mean y: 2544361.9638554216
[2025-10-14 01:17:02] 2025-10-13 16:15:53,821 | INFO     | -- intersect: 131816448791.48933
[2025-10-14 01:17:02] 2025-10-13 16:15:53,821 | INFO     | intersect: 131816448791.48933
[2025-10-14 01:17:02] 2025-10-13 16:15:53,821 | INFO     | chi2: 0.15120334927919013
[2025-10-14 01:17:02] 2025-10-13 16:15:53,821 | INFO     | -- intersect: 131816448791.48933
[2025-10-14 01:17:02] 2025-10-13 16:15:53,821 | INFO     | current memory leak: -74.88 B/s (using 83 data points, chi2=0.15)
[2025-10-14 01:17:02] 2025-10-13 16:15:53,822 | INFO     | could have reported an average CPU frequency of 3323 MHz (6 samples)
[2025-10-14 01:17:02] 2025-10-13 16:15:53,822 | INFO     | ..............................
[2025-10-14 01:17:02] 2025-10-13 16:15:53,822 | INFO     | . Timing measurements:
[2025-10-14 01:17:02] 2025-10-13 16:15:53,822 | INFO     | . get job = 0 s
[2025-10-14 01:17:02] 2025-10-13 16:15:53,822 | INFO     | . initial setup = 7 s
[2025-10-14 01:17:02] 2025-10-13 16:15:53,823 | INFO     | . payload setup = 4 s
[2025-10-14 01:17:02] 2025-10-13 16:15:53,823 | INFO     | . stage-in = 0 s
[2025-10-14 01:17:02] 2025-10-13 16:15:53,823 | INFO     | . payload execution = 5492 s
[2025-10-14 01:17:02] 2025-10-13 16:15:53,823 | INFO     | . stage-out = 0 s
[2025-10-14 01:17:02] 2025-10-13 16:15:53,823 | INFO     | . log creation = 0 s
[2025-10-14 01:17:02] 2025-10-13 16:15:53,823 | INFO     | ..............................
[2025-10-14 01:17:02] 2025-10-13 16:15:53,834 | INFO     | size of work directory /var/lib/boinc/slots/1/PanDA_Pilot-6841405507: 3272533 B (within 2537553920 B limit)
[2025-10-14 01:17:02] 2025-10-13 16:15:53,855 | INFO     | pfn file=/var/lib/boinc/slots/1/PanDA_Pilot-6841405507/HITS.46676269._095116.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-14 01:17:02] 2025-10-13 16:15:53,870 | INFO     | total size of present files: 0 B (workdir size: 3272533 B)
[2025-10-14 01:17:02] 2025-10-13 16:15:53,886 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/1/PanDA_Pilot-6841405507/HITS.46676269._095116.pool.root.1 since it does not exist
[2025-10-14 01:17:02] 2025-10-13 16:15:53,902 | INFO     | 
[2025-10-14 01:17:02] 2025-10-13 16:15:53,902 | INFO     | job summary report
[2025-10-14 01:17:02] 2025-10-13 16:15:53,902 | INFO     | --------------------------------------------------
[2025-10-14 01:17:02] 2025-10-13 16:15:53,902 | INFO     | PanDA job id: 6841405507
[2025-10-14 01:17:02] 2025-10-13 16:15:53,902 | INFO     | task id: 46676269
[2025-10-14 01:17:02] 2025-10-13 16:15:53,902 | INFO     | errors: (none)
[2025-10-14 01:17:02] 2025-10-13 16:15:53,903 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 01:17:02] 2025-10-13 16:15:53,903 | INFO     | pilot state: finished 
[2025-10-14 01:17:02] 2025-10-13 16:15:53,903 | INFO     | transexitcode: 0
[2025-10-14 01:17:02] 2025-10-13 16:15:53,903 | INFO     | exeerrorcode: 0
[2025-10-14 01:17:02] 2025-10-13 16:15:53,903 | INFO     | exeerrordiag: 
[2025-10-14 01:17:02] 2025-10-13 16:15:53,903 | INFO     | exitcode: 0
[2025-10-14 01:17:02] 2025-10-13 16:15:53,904 | INFO     | exitmsg: OK
[2025-10-14 01:17:02] 2025-10-13 16:15:53,904 | INFO     | cpuconsumptiontime: 30022 s
[2025-10-14 01:17:02] 2025-10-13 16:15:53,904 | INFO     | nevents: 400
[2025-10-14 01:17:02] 2025-10-13 16:15:53,904 | INFO     | neventsw: 0
[2025-10-14 01:17:02] 2025-10-13 16:15:53,904 | INFO     | pid: 140450
[2025-10-14 01:17:02] 2025-10-13 16:15:53,905 | INFO     | pgrp: 140450
[2025-10-14 01:17:02] 2025-10-13 16:15:53,905 | INFO     | corecount: 6
[2025-10-14 01:17:02] 2025-10-13 16:15:53,905 | INFO     | event service: False
[2025-10-14 01:17:02] 2025-10-13 16:15:53,905 | INFO     | sizes: {0: 2348636, 1: 2348835, 4: 2349097, 11: 2349125, 5497: 2375723, 5498: 2384721, 5499: 2384905, 5572: 2385127}
[2025-10-14 01:17:02] 2025-10-13 16:15:53,905 | INFO     | --------------------------------------------------
[2025-10-14 01:17:02] 2025-10-13 16:15:53,905 | INFO     | 
[2025-10-14 01:17:02] 2025-10-13 16:15:53,905 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-14 01:17:02] 2025-10-13 16:15:53,921 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,921 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,922 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,922 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,922 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,922 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,922 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,922 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,922 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,923 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,923 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,923 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,923 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,923 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,923 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,923 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,924 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,924 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 01:17:02] 2025-10-13 16:15:53,924 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,924 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 01:17:02] 2025-10-13 16:15:53,924 | INFO     | job 6841405507 has completed (purged errors)
[2025-10-14 01:17:02] 2025-10-13 16:15:53,924 | INFO     | overall cleanup function is called
[2025-10-14 01:17:02] 2025-10-13 16:15:54,024 | INFO     | number of running child processes to parent process 140450: 1
[2025-10-14 01:17:02] 2025-10-13 16:15:54,024 | INFO     | maximum number of monitored processes: 6
[2025-10-14 01:17:02] 2025-10-13 16:15:54,024 | INFO     | aborting job monitoring since job object (job id=6841405507) has expired
[2025-10-14 01:17:02] 2025-10-13 16:15:54,933 | INFO     | --- collectZombieJob: --- 10, [140450]
[2025-10-14 01:17:02] 2025-10-13 16:15:54,933 | INFO     | zombie collector waiting for pid 140450
[2025-10-14 01:17:02] 2025-10-13 16:15:54,933 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 01:17:02] 2025-10-13 16:15:54,933 | INFO     | collected zombie processes
[2025-10-14 01:17:02] 2025-10-13 16:15:54,933 | INFO     | will attempt to kill all subprocesses of pid=140450
[2025-10-14 01:17:02] 2025-10-13 16:15:55,019 | INFO     | process IDs to be killed: [140450] (in reverse order)
[2025-10-14 01:17:02] 2025-10-13 16:15:55,051 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 01:17:02] 2025-10-13 16:15:55,052 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 01:17:02] 2025-10-13 16:15:55,055 | INFO     | did not find any defunct processes belonging to 140450
[2025-10-14 01:17:02] 2025-10-13 16:15:55,059 | INFO     | did not find any defunct processes belonging to 140450
[2025-10-14 01:17:02] 2025-10-13 16:15:55,059 | INFO     | ready for new job
[2025-10-14 01:17:02] 2025-10-13 16:15:55,059 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 01:17:02] 2025-10-13 16:15:55,061 | INFO     | ***************************************
[2025-10-14 01:17:02] 2025-10-13 16:15:55,061 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 01:17:02] 2025-10-13 16:15:55,061 | INFO     | ***************************************
[2025-10-14 01:17:02] 2025-10-13 16:15:55,061 | INFO     | 
[2025-10-14 01:17:02] 2025-10-13 16:15:55,062 | INFO     | architecture information:
[2025-10-14 01:17:02] 2025-10-13 16:15:55,062 | INFO     | executing command: cat /etc/os-release
[2025-10-14 01:17:02] 2025-10-13 16:15:55,073 | INFO     | cat /etc/os-release:
[2025-10-14 01:17:02] NAME="CentOS Linux"
[2025-10-14 01:17:02] VERSION="7 (Core)"
[2025-10-14 01:17:02] ID="centos"
[2025-10-14 01:17:02] ID_LIKE="rhel fedora"
[2025-10-14 01:17:02] VERSION_ID="7"
[2025-10-14 01:17:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 01:17:02] ANSI_COLOR="0;31"
[2025-10-14 01:17:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 01:17:02] HOME_URL="https://www.centos.org/"
[2025-10-14 01:17:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 01:17:02] 
[2025-10-14 01:17:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 01:17:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 01:17:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 01:17:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 01:17:02] 
[2025-10-14 01:17:02] 2025-10-13 16:15:55,073 | INFO     | ***************************************
[2025-10-14 01:17:02] 2025-10-13 16:15:55,576 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-14 01:17:02] 2025-10-13 16:15:55,587 | INFO     | sufficient remaining disk space (98058633216 B)
[2025-10-14 01:17:02] 2025-10-13 16:15:55,587 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 01:17:02] 2025-10-13 16:15:55,588 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 01:17:02] 2025-10-13 16:15:55,588 | INFO     | update_server=False
[2025-10-14 01:17:02] 2025-10-13 16:15:55,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 01:17:02] 2025-10-13 16:15:55,588 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 01:17:02] 2025-10-13 16:15:55,588 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 01:17:02] 2025-10-13 16:15:55,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 01:17:02] 2025-10-13 16:15:55,588 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 01:17:02] 2025-10-13 16:15:55,589 | INFO     | aborting loop
[2025-10-14 01:17:02] 2025-10-13 16:15:55,593 | INFO     | all data control threads have been joined
[2025-10-14 01:17:02] 2025-10-13 16:15:56,272 | INFO     | all job control threads have been joined
[2025-10-14 01:17:02] 2025-10-13 16:15:56,593 | INFO     | [job] retrieve thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:56,594 | INFO     | [job] queue monitor thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:56,594 | INFO     | [job] job monitor thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:56,599 | INFO     | [data] control thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:56,660 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:56,665 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:57,016 | INFO     | [payload] validate_post thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:57,022 | INFO     | all payload control threads have been joined
[2025-10-14 01:17:02] 2025-10-13 16:15:57,182 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:57,188 | INFO     | [data] copytool_in thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:57,277 | INFO     | [job] control thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:57,594 | INFO     | [data] copytool_out thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:57,719 | INFO     | [payload] failed_post thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:57,860 | INFO     | [job] validate thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:58,025 | INFO     | [payload] control thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:58,049 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:15:59,594 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 01:17:02] 2025-10-13 16:16:26,482 | INFO     | PID=133683 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 01:17:02] 2025-10-13 16:16:26,482 | INFO     | .. there are 2 such processes running
[2025-10-14 01:17:02] 2025-10-13 16:16:26,482 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 01:17:02] 2025-10-13 16:16:26,482 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 01:17:02] 2025-10-13 16:16:26,482 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 01:17:02] 2025-10-13 16:16:55,252 | INFO     | [monitor] cgroup control has ended
[2025-10-14 01:17:02] 2025-10-13 16:16:56,977 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140416126043968)>', '<ExcThread(monitor, started 140415483238144)>']
[2025-10-14 01:17:02] 2025-10-13 16:16:57,634 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 01:17:02] 2025-10-13 16:16:57,634 | INFO     | [monitor] control thread has ended
[2025-10-14 01:17:02] 2025-10-13 16:17:01,988 | INFO     | all workflow threads have been joined
[2025-10-14 01:17:02] 2025-10-13 16:17:01,988 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 01:17:02] 2025-10-13 16:17:01,989 | INFO     | traces error code: 0
[2025-10-14 01:17:02] 2025-10-13 16:17:01,989 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 01:17:02] 2025-10-13 16:17:02,062 [wrapper] ==== pilot stdout END ====
[2025-10-14 01:17:02] 2025-10-13 16:17:02,065 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 01:17:02] 2025-10-13 16:17:02,067 [wrapper] pilotpid: 133683
[2025-10-14 01:17:02] 2025-10-13 16:17:02,069 [wrapper] Pilot exit status: 0
[2025-10-14 01:17:02] 2025-10-13 16:17:02,077 [wrapper] pandaids: 6841405507
[2025-10-14 01:17:02] 2025-10-13 16:17:02,101 [wrapper] cleanup supervisor_pilot  177449 133684
[2025-10-14 01:17:02] 2025-10-13 16:17:02,103 [wrapper] Test setup, not cleaning
[2025-10-14 01:17:02] 2025-10-13 16:17:02,105 [wrapper] apfmon messages muted
[2025-10-14 01:17:02] 2025-10-13 16:17:02,107 [wrapper] ==== wrapper stdout END ====
[2025-10-14 01:17:02] 2025-10-13 16:17:02,109 [wrapper] ==== wrapper stderr END ====
[2025-10-14 01:17:02]  *** Error codes and diagnostics ***
[2025-10-14 01:17:02]     "exeErrorCode": 0,
[2025-10-14 01:17:02]     "exeErrorDiag": "",
[2025-10-14 01:17:02]     "pilotErrorCode": 0,
[2025-10-14 01:17:02]     "pilotErrorDiag": "",
[2025-10-14 01:17:02]  *** Listing of results directory ***
[2025-10-14 01:17:02] total 413972
[2025-10-14 01:17:02] -rw-r--r--. 1 boinc boinc    557409 Oct 13 11:00 pilot3.tar.gz
[2025-10-14 01:17:02] -rw-r--r--. 1 boinc boinc      5112 Oct 13 11:33 queuedata.json
[2025-10-14 01:17:02] -rwx------. 1 boinc boinc     36292 Oct 13 11:33 runpilot2-wrapper.sh
[2025-10-14 01:17:02] -rw-r--r--. 1 boinc boinc       100 Oct 13 23:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 01:17:02] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 23:42 run_atlas
[2025-10-14 01:17:02] -rw-r--r--. 1 boinc boinc       105 Oct 13 23:42 job.xml
[2025-10-14 01:17:02] -rw-r--r--. 2 boinc boinc     15120 Oct 13 23:42 start_atlas.sh
[2025-10-14 01:17:02] drwxrwx--x. 2 boinc boinc        68 Oct 13 23:42 shared
[2025-10-14 01:17:02] -rw-r--r--. 2 boinc boinc    569688 Oct 13 23:42 input.tar.gz
[2025-10-14 01:17:02] -rw-r--r--. 1 boinc boinc      9362 Oct 13 23:42 init_data.xml
[2025-10-14 01:17:02] -rw-r--r--. 2 boinc boinc 218623308 Oct 13 23:42 EVNT.46676267._001154.pool.root.1
[2025-10-14 01:17:02] -rw-r--r--. 1 boinc boinc         0 Oct 13 23:42 boinc_lockfile
[2025-10-14 01:17:02] -rw-r--r--. 1 boinc boinc      2550 Oct 13 23:42 pandaJob.out
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc    972791 Oct 13 23:42 agis_schedconf.cvmfs.json
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc   1560580 Oct 13 23:42 agis_ddmendpoints.agis.ALL.json
[2025-10-14 01:17:02] drwx------. 5 boinc boinc      4096 Oct 13 23:42 pilot3
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc 199156756 Oct 14 01:14 HITS.46676269._095116.pool.root.1
[2025-10-14 01:17:02] -rw-r--r--. 1 boinc boinc       529 Oct 14 01:14 boinc_task_state.xml
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc      1016 Oct 14 01:14 memory_monitor_summary.json
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc    310948 Oct 14 01:14 log.46676269._095116.job.log.tgz.1
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc        95 Oct 14 01:15 pilot_heartbeat.json
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc      7751 Oct 14 01:15 heartbeat.json
[2025-10-14 01:17:02] -rw-r--r--. 1 boinc boinc      8192 Oct 14 01:17 boinc_mmap_file
[2025-10-14 01:17:02] -rw-r--r--. 1 boinc boinc        27 Oct 14 01:17 wrapper_checkpoint.txt
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc      4822 Oct 14 01:17 pilotlog.txt
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc    808158 Oct 14 01:17 log.46676269._095116.job.log.1
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc       357 Oct 14 01:17 output.list
[2025-10-14 01:17:02] -rw-r--r--. 1 boinc boinc       620 Oct 14 01:17 runtime_log
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc   1136640 Oct 14 01:17 result.tar.gz
[2025-10-14 01:17:02] -rw-r--r--. 1 boinc boinc      8661 Oct 14 01:17 runtime_log.err
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc       642 Oct 14 01:17 oIrMDmEYNS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm1YVMDmotllQn.diag
[2025-10-14 01:17:02] -rw-r--r--. 1 boinc boinc     22104 Oct 14 01:17 stderr.txt
[2025-10-14 01:17:02] HITS file was successfully produced:
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc 199156756 Oct 14 01:14 shared/HITS.pool.root.1
[2025-10-14 01:17:02]  *** Contents of shared directory: ***
[2025-10-14 01:17:02] total 409680
[2025-10-14 01:17:02] -rw-r--r--. 2 boinc boinc     15120 Oct 13 23:42 start_atlas.sh
[2025-10-14 01:17:02] -rw-r--r--. 2 boinc boinc    569688 Oct 13 23:42 input.tar.gz
[2025-10-14 01:17:02] -rw-r--r--. 2 boinc boinc 218623308 Oct 13 23:42 ATLAS.root_0
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc 199156756 Oct 14 01:14 HITS.pool.root.1
[2025-10-14 01:17:02] -rw-------. 1 boinc boinc   1136640 Oct 14 01:17 result.tar.gz
01:17:03 (129888): run_atlas exited; CPU time 30083.410412
01:17:03 (129888): called boinc_finish(0)

</stderr_txt>
]]>

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