Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
05:27:29 (628364): wrapper (7.7.26015): starting
05:27:29 (628364): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 05:27:29] Arguments: --nthreads 4
[2025-10-13 05:27:29] Threads: 4
[2025-10-13 05:27:29] Checking for CVMFS
[2025-10-13 05:27:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:27:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:27:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:27:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:27:30] 2.12.7.0 5521 551 60000 151660 2 188 3837687 4096000 917 130560 0 873972 99.994 21420 501 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 05:27:30] CVMFS is ok
[2025-10-13 05:27:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:27:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:27:30] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 05:27:30] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 05:27:30] Further information can be found at the LHC@home message board.
[2025-10-13 05:27:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:27:30] Checking for apptainer binary...
[2025-10-13 05:27:30] apptainer is not installed, using version from CVMFS
[2025-10-13 05:27:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:27:30] X570UD
[2025-10-13 05:27:30] apptainer works
[2025-10-13 05:27:30] Set ATHENA_PROC_NUMBER=4
[2025-10-13 05:27:30] Set ATHENA_CORE_NUMBER=4
[2025-10-13 05:27:30] Starting ATLAS job with PandaID=6840970176
[2025-10-13 05:27:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc3/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:45:58]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:45:58]  status_code=0
[2025-10-13 06:45:58]  storage_token=
[2025-10-13 06:45:58]  surl=/var/lib/boinc3/slots/0/PanDA_Pilot-6840970176/log.46676269._092596.job.log.tgz.1
[2025-10-13 06:45:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/e5/log.46676269._092596.job.log.tgz.1
[2025-10-13 06:45:58]  workdir=None
[2025-10-13 06:45:58] ]
[2025-10-13 06:45:58] 2025-10-13 12:45:19,411 | INFO     | transferring file log.46676269._092596.job.log.tgz.1 from /var/lib/boinc3/slots/0/PanDA_Pilot-6840970176/log.46676269._092596.job.log.tgz.1 to /var/lib/boinc3/slot
[2025-10-13 06:45:58] 2025-10-13 12:45:19,411 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc3/slots/0/PanDA_Pilot-6840970176/log.46676269._092596.job.log.tgz.1 /var/lib/boinc3/slots/0/log.46676269._092596.j
[2025-10-13 06:45:58] 2025-10-13 12:45:19,419 | INFO     | adding to output.list: log.46676269._092596.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/e5/log.46676269._092596.job.log.tg
[2025-10-13 06:45:58] 2025-10-13 12:45:19,420 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 06:45:58] 2025-10-13 12:45:19,420 | INFO     | summary of transferred files:
[2025-10-13 06:45:58] 2025-10-13 12:45:19,420 | INFO     |  -- lfn=log.46676269._092596.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 06:45:58] 2025-10-13 12:45:19,420 | INFO     | stage-out finished correctly
[2025-10-13 06:45:58] 2025-10-13 12:45:20,044 | INFO     | PID=632273 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 06:45:58] 2025-10-13 12:45:20,044 | INFO     | .. there are 2 such processes running
[2025-10-13 06:45:58] 2025-10-13 12:45:21,045 | INFO     | time since job start (4658s) is within the limit (172800.0s)
[2025-10-13 06:45:58] 2025-10-13 12:45:21,304 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 06:45:58] 2025-10-13 12:45:22,597 | WARNING  | process 639145 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 06:45:58] 2025-10-13 12:45:22,597 | INFO     | using path: /var/lib/boinc3/slots/0/PanDA_Pilot-6840970176/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:45:58] 2025-10-13 12:45:22,658 | INFO     | number of running child processes to parent process 639145: 1
[2025-10-13 06:45:58] 2025-10-13 12:45:22,658 | INFO     | maximum number of monitored processes: 6
[2025-10-13 06:45:58] 2025-10-13 12:45:23,050 | INFO     | time since job start (4660s) is within the limit (172800.0s)
[2025-10-13 06:45:58] 2025-10-13 12:45:23,789 | INFO     | job 6840970176 has state=finished
[2025-10-13 06:45:58] 2025-10-13 12:45:23,789 | INFO     | preparing for final server update for job 6840970176 in state='finished'
[2025-10-13 06:45:58] 2025-10-13 12:45:23,789 | INFO     | this job has now completed (state=finished)
[2025-10-13 06:45:58] 2025-10-13 12:45:23,789 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 06:45:58] 2025-10-13 12:45:23,789 | INFO     | log transfer has been attempted: DONE
[2025-10-13 06:45:58] 2025-10-13 12:45:23,789 | INFO     | job 6840970176 has finished - writing final server update
[2025-10-13 06:45:58] 2025-10-13 12:45:23,789 | INFO     | total number of processed events: 400 (read)
[2025-10-13 06:45:58] 2025-10-13 12:45:23,790 | INFO     | executing command: lscpu
[2025-10-13 06:45:58] 2025-10-13 12:45:23,806 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 06:45:58] 2025-10-13 12:45:25,056 | INFO     | time since job start (4662s) is within the limit (172800.0s)
[2025-10-13 06:45:58] 2025-10-13 12:45:25,160 | INFO     | monitor loop #356: job 0:6840970176 is in state 'finished'
[2025-10-13 06:45:58] 2025-10-13 12:45:25,160 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:45:58] 2025-10-13 12:45:25,451 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 06:45:58] 2025-10-13 12:45:25,454 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3604.2966249999995
[2025-10-13 06:45:58] 2025-10-13 12:45:25,457 | INFO     | using path: /var/lib/boinc3/slots/0/PanDA_Pilot-6840970176/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:45:58] 2025-10-13 12:45:25,457 | INFO     | extracted standard info from prmon json
[2025-10-13 06:45:58] 2025-10-13 12:45:25,457 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 06:45:58] 2025-10-13 12:45:25,457 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 06:45:58] 2025-10-13 12:45:25,457 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:45:58] 2025-10-13 12:45:25,457 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:45:58] 2025-10-13 12:45:25,458 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:45:58] 2025-10-13 12:45:25,458 | INFO     | sum of square deviations: 101843770.0
[2025-10-13 06:45:58] 2025-10-13 12:45:25,458 | INFO     | sum of deviations: -6497515711.000001
[2025-10-13 06:45:58] 2025-10-13 12:45:25,458 | INFO     | mean x: 1760357266.0
[2025-10-13 06:45:58] 2025-10-13 12:45:25,458 | INFO     | mean y: 2456821.144927536
[2025-10-13 06:45:58] 2025-10-13 12:45:25,458 | INFO     | -- intersect: 112311231258.77629
[2025-10-13 06:45:58] 2025-10-13 12:45:25,458 | INFO     | intersect: 112311231258.77629
[2025-10-13 06:45:58] 2025-10-13 12:45:25,458 | INFO     | chi2: 0.039439228580937784
[2025-10-13 06:45:58] 2025-10-13 12:45:25,458 | INFO     | -- intersect: 112311231258.77629
[2025-10-13 06:45:58] 2025-10-13 12:45:25,458 | INFO     | current memory leak: -63.80 B/s (using 69 data points, chi2=0.04)
[2025-10-13 06:45:58] 2025-10-13 12:45:25,459 | INFO     | could have reported an average CPU frequency of 3954 MHz (6 samples)
[2025-10-13 06:45:58] 2025-10-13 12:45:25,459 | INFO     | ..............................
[2025-10-13 06:45:58] 2025-10-13 12:45:25,459 | INFO     | . Timing measurements:
[2025-10-13 06:45:58] 2025-10-13 12:45:25,459 | INFO     | . get job = 0 s
[2025-10-13 06:45:58] 2025-10-13 12:45:25,459 | INFO     | . initial setup = 4 s
[2025-10-13 06:45:58] 2025-10-13 12:45:25,459 | INFO     | . payload setup = 5 s
[2025-10-13 06:45:58] 2025-10-13 12:45:25,459 | INFO     | . stage-in = 0 s
[2025-10-13 06:45:58] 2025-10-13 12:45:25,459 | INFO     | . payload execution = 4631 s
[2025-10-13 06:45:58] 2025-10-13 12:45:25,459 | INFO     | . stage-out = 0 s
[2025-10-13 06:45:58] 2025-10-13 12:45:25,459 | INFO     | . log creation = 0 s
[2025-10-13 06:45:58] 2025-10-13 12:45:25,459 | INFO     | ..............................
[2025-10-13 06:45:58] 2025-10-13 12:45:25,714 | INFO     | 
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | job summary report
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | --------------------------------------------------
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | PanDA job id: 6840970176
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | task id: 46676269
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | errors: (none)
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | pilot state: finished 
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | transexitcode: 0
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | exeerrorcode: 0
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | exeerrordiag: 
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | exitcode: 0
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | exitmsg: OK
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | cpuconsumptiontime: 17642 s
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | nevents: 400
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | neventsw: 0
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | pid: 639145
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | pgrp: 639145
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | corecount: 4
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | event service: False
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | sizes: {0: 2348858, 4: 2349120, 11: 2349148, 4640: 2375287, 4642: 2384287, 4644: 2384343, 4648: 2384665}
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | --------------------------------------------------
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | 
[2025-10-13 06:45:58] 2025-10-13 12:45:25,715 | INFO     | executing command: ls -lF /var/lib/boinc3/slots/0
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,727 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:45:58] 2025-10-13 12:45:25,728 | INFO     | job 6840970176 has completed (purged errors)
[2025-10-13 06:45:58] 2025-10-13 12:45:25,728 | INFO     | overall cleanup function is called
[2025-10-13 06:45:58] 2025-10-13 12:45:26,734 | INFO     | --- collectZombieJob: --- 10, [639145]
[2025-10-13 06:45:58] 2025-10-13 12:45:26,734 | INFO     | zombie collector waiting for pid 639145
[2025-10-13 06:45:58] 2025-10-13 12:45:26,734 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:45:58] 2025-10-13 12:45:26,735 | INFO     | collected zombie processes
[2025-10-13 06:45:58] 2025-10-13 12:45:26,735 | INFO     | will attempt to kill all subprocesses of pid=639145
[2025-10-13 06:45:58] 2025-10-13 12:45:26,803 | INFO     | process IDs to be killed: [639145] (in reverse order)
[2025-10-13 06:45:58] 2025-10-13 12:45:26,831 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:45:58] 2025-10-13 12:45:26,832 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:45:58] 2025-10-13 12:45:26,833 | INFO     | did not find any defunct processes belonging to 639145
[2025-10-13 06:45:58] 2025-10-13 12:45:26,835 | INFO     | did not find any defunct processes belonging to 639145
[2025-10-13 06:45:58] 2025-10-13 12:45:26,835 | INFO     | ready for new job
[2025-10-13 06:45:58] 2025-10-13 12:45:26,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:45:58] 2025-10-13 12:45:26,836 | INFO     | ***************************************
[2025-10-13 06:45:58] 2025-10-13 12:45:26,836 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:45:58] 2025-10-13 12:45:26,836 | INFO     | ***************************************
[2025-10-13 06:45:58] 2025-10-13 12:45:26,836 | INFO     | 
[2025-10-13 06:45:58] 2025-10-13 12:45:26,837 | INFO     | architecture information:
[2025-10-13 06:45:58] 2025-10-13 12:45:26,837 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:45:58] 2025-10-13 12:45:26,843 | INFO     | cat /etc/os-release:
[2025-10-13 06:45:58] NAME="CentOS Linux"
[2025-10-13 06:45:58] VERSION="7 (Core)"
[2025-10-13 06:45:58] ID="centos"
[2025-10-13 06:45:58] ID_LIKE="rhel fedora"
[2025-10-13 06:45:58] VERSION_ID="7"
[2025-10-13 06:45:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:45:58] ANSI_COLOR="0;31"
[2025-10-13 06:45:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:45:58] HOME_URL="https://www.centos.org/"
[2025-10-13 06:45:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:45:58] 
[2025-10-13 06:45:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:45:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:45:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:45:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:45:58] 
[2025-10-13 06:45:58] 2025-10-13 12:45:26,843 | INFO     | ***************************************
[2025-10-13 06:45:58] 2025-10-13 12:45:27,346 | INFO     | executing command: df -mP /var/lib/boinc3/slots/0
[2025-10-13 06:45:58] 2025-10-13 12:45:27,353 | INFO     | sufficient remaining disk space (260897243136 B)
[2025-10-13 06:45:58] 2025-10-13 12:45:27,353 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:45:58] 2025-10-13 12:45:27,354 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:45:58] 2025-10-13 12:45:27,354 | INFO     | update_server=False
[2025-10-13 06:45:58] 2025-10-13 12:45:27,354 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:45:58] 2025-10-13 12:45:27,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:45:58] 2025-10-13 12:45:27,354 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:45:58] 2025-10-13 12:45:27,458 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:45:58] 2025-10-13 12:45:27,463 | INFO     | all data control threads have been joined
[2025-10-13 06:45:58] 2025-10-13 12:45:27,663 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 06:45:58] 2025-10-13 12:45:27,663 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 06:45:58] 2025-10-13 12:45:27,663 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:45:58] 2025-10-13 12:45:27,664 | INFO     | will abort loop
[2025-10-13 06:45:58] 2025-10-13 12:45:28,359 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:28,359 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:28,463 | INFO     | [data] control thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:28,566 | INFO     | all payload control threads have been joined
[2025-10-13 06:45:58] 2025-10-13 12:45:28,650 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:28,669 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:28,787 | INFO     | all job control threads have been joined
[2025-10-13 06:45:58] 2025-10-13 12:45:29,066 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:29,131 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:29,201 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:29,463 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:29,571 | INFO     | [payload] control thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:29,666 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:29,741 | INFO     | [job] validate thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:29,792 | INFO     | [job] control thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:29,830 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:29,961 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:31,358 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:45:58] 2025-10-13 12:45:49,599 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:45:58] 2025-10-13 12:45:50,604 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138416792360768)>', '<ExcThread(monitor, started 138416276608768)>']
[2025-10-13 06:45:58] 2025-10-13 12:45:55,628 | INFO     | all workflow threads have been joined
[2025-10-13 06:45:58] 2025-10-13 12:45:55,628 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:45:58] 2025-10-13 12:45:55,629 | INFO     | traces error code: 0
[2025-10-13 06:45:58] 2025-10-13 12:45:55,629 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:45:58] 2025-10-13 12:45:58,206 | INFO     | PID=632273 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 06:45:58] 2025-10-13 12:45:58,206 | INFO     | .. there are 2 such processes running
[2025-10-13 06:45:58] 2025-10-13 12:45:58,206 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:45:58] 2025-10-13 12:45:58,206 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:45:58] 2025-10-13 12:45:58,206 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:45:58] 2025-10-13 12:45:58,206 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:45:58] 2025-10-13 12:45:58,206 | INFO     | [monitor] control thread has ended
[2025-10-13 06:45:58] 2025-10-13 12:45:58,251 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:45:58] 2025-10-13 12:45:58,252 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:45:58] 2025-10-13 12:45:58,253 [wrapper] pilotpid: 632273
[2025-10-13 06:45:58] 2025-10-13 12:45:58,255 [wrapper] Pilot exit status: 0
[2025-10-13 06:45:58] 2025-10-13 12:45:58,259 [wrapper] pandaids: 6840970176
[2025-10-13 06:45:58] 2025-10-13 12:45:58,276 [wrapper] cleanup supervisor_pilot  716552 632274
[2025-10-13 06:45:58] 2025-10-13 12:45:58,278 [wrapper] Test setup, not cleaning
[2025-10-13 06:45:58] 2025-10-13 12:45:58,279 [wrapper] apfmon messages muted
[2025-10-13 06:45:58] 2025-10-13 12:45:58,280 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:45:58] 2025-10-13 12:45:58,281 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:45:58]  *** Error codes and diagnostics ***
[2025-10-13 06:45:58]     "exeErrorCode": 0,
[2025-10-13 06:45:58]     "exeErrorDiag": "",
[2025-10-13 06:45:58]     "pilotErrorCode": 0,
[2025-10-13 06:45:58]     "pilotErrorDiag": "",
[2025-10-13 06:45:58]  *** Listing of results directory ***
[2025-10-13 06:45:58] total 416028
[2025-10-13 06:45:58] -rw-r--r-- 1 boinc boinc    557409 Oct 12 17:51 pilot3.tar.gz
[2025-10-13 06:45:58] -rw-r--r-- 1 boinc boinc      5112 Oct 12 17:57 queuedata.json
[2025-10-13 06:45:58] -rwx------ 1 boinc boinc     36292 Oct 12 17:58 runpilot2-wrapper.sh
[2025-10-13 06:45:58] -rw-rw-r-- 1 boinc boinc       100 Oct 13 05:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:45:58] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 05:27 run_atlas
[2025-10-13 06:45:58] -rw-rw-r-- 1 boinc boinc       105 Oct 13 05:27 job.xml
[2025-10-13 06:45:58] drwxrwx--x 2 boinc boinc      4096 Oct 13 05:27 shared
[2025-10-13 06:45:58] -rw-r--r-- 2 boinc boinc    569681 Oct 13 05:27 input.tar.gz
[2025-10-13 06:45:58] -rw-rw-r-- 1 boinc boinc      9735 Oct 13 05:27 init_data.xml
[2025-10-13 06:45:58] -rw-r--r-- 2 boinc boinc 220686994 Oct 13 05:27 EVNT.46676267._004673.pool.root.1
[2025-10-13 06:45:58] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:27 start_atlas.sh
[2025-10-13 06:45:58] -rw-rw-r-- 1 boinc boinc         0 Oct 13 05:27 boinc_lockfile
[2025-10-13 06:45:58] -rw-rw-r-- 1 boinc boinc      2550 Oct 13 05:27 pandaJob.out
[2025-10-13 06:45:58] -rw------- 1 boinc boinc    972497 Oct 13 05:27 agis_schedconf.cvmfs.json
[2025-10-13 06:45:58] -rw------- 1 boinc boinc   1560580 Oct 13 05:27 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:45:58] drwx------ 5 boinc boinc      4096 Oct 13 05:27 pilot3
[2025-10-13 06:45:58] -rw------- 1 boinc boinc 199515232 Oct 13 06:44 HITS.46676269._092596.pool.root.1
[2025-10-13 06:45:58] -rw-rw-r-- 1 boinc boinc       529 Oct 13 06:45 boinc_task_state.xml
[2025-10-13 06:45:58] -rw------- 1 boinc boinc      1018 Oct 13 06:45 memory_monitor_summary.json
[2025-10-13 06:45:58] -rw------- 1 boinc boinc        95 Oct 13 06:45 pilot_heartbeat.json
[2025-10-13 06:45:58] -rw------- 1 boinc boinc    256374 Oct 13 06:45 log.46676269._092596.job.log.tgz.1
[2025-10-13 06:45:58] -rw------- 1 boinc boinc      7732 Oct 13 06:45 heartbeat.json
[2025-10-13 06:45:58] -rw-rw-r-- 1 boinc boinc      8192 Oct 13 06:45 boinc_mmap_file
[2025-10-13 06:45:58] -rw-rw-r-- 1 boinc boinc        27 Oct 13 06:45 wrapper_checkpoint.txt
[2025-10-13 06:45:58] -rw------- 1 boinc boinc       821 Oct 13 06:45 pilotlog.txt
[2025-10-13 06:45:58] -rw------- 1 boinc boinc    699519 Oct 13 06:45 log.46676269._092596.job.log.1
[2025-10-13 06:45:58] -rw------- 1 boinc boinc       357 Oct 13 06:45 output.list
[2025-10-13 06:45:58] -rw-rw-r-- 1 boinc boinc       620 Oct 13 06:45 runtime_log
[2025-10-13 06:45:58] -rw------- 1 boinc boinc    972800 Oct 13 06:45 result.tar.gz
[2025-10-13 06:45:58] -rw------- 1 boinc boinc       651 Oct 13 06:45 yGRMDmq8KS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm56lNDmUZRsGo.diag
[2025-10-13 06:45:58] -rw-rw-r-- 1 boinc boinc      8699 Oct 13 06:45 runtime_log.err
[2025-10-13 06:45:58] -rw-rw-r-- 1 boinc boinc     22351 Oct 13 06:45 stderr.txt
[2025-10-13 06:45:58] HITS file was successfully produced:
[2025-10-13 06:45:58] -rw------- 1 boinc boinc 199515232 Oct 13 06:44 shared/HITS.pool.root.1
[2025-10-13 06:45:58]  *** Contents of shared directory: ***
[2025-10-13 06:45:58] total 411892
[2025-10-13 06:45:58] -rw-r--r-- 2 boinc boinc    569681 Oct 13 05:27 input.tar.gz
[2025-10-13 06:45:58] -rw-r--r-- 2 boinc boinc 220686994 Oct 13 05:27 ATLAS.root_0
[2025-10-13 06:45:58] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:27 start_atlas.sh
[2025-10-13 06:45:58] -rw------- 1 boinc boinc 199515232 Oct 13 06:44 HITS.pool.root.1
[2025-10-13 06:45:58] -rw------- 1 boinc boinc    972800 Oct 13 06:45 result.tar.gz
06:46:00 (628364): run_atlas exited; CPU time 17668.504664
06:46:00 (628364): called boinc_finish(0)

</stderr_txt>
]]>

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